© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|017240 |
| Gene name | |
| Location | scaffold_10:605031..606100 |
| Strand | - |
| Gene length (bp) | 1069 |
| Transcript length (bp) | 903 |
| Coding sequence length (bp) | 903 |
| Protein length (aa) | 301 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09451 | ATG27 | Autophagy-related protein 27 | 9.4E-20 | 19 | 244 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 227 | 249 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 20.64 | 9.73 | 31.54 |
| Initials | Initials knots | 31.12 | 16.76 | 45.47 |
| Pileal_Stipeal_center | Stage I stipe center | 9.69 | 4.43 | 14.94 |
| Pileal_Stipeal_shell | Stage I stipe shell | 8.03 | 3.56 | 12.51 |
| DIF_stipe_center | Stage II stipe center | 8.07 | 3.58 | 12.57 |
| DIF_stipe_shell | Stage II stipe shell | 9.67 | 4.39 | 14.94 |
| DIF_stipe_skin | Stage II stipe skin | 10.87 | 5.08 | 16.66 |
| DIF_cap_skin | Stage II cap skin | 4.94 | 1.99 | 7.89 |
| DIF_cap_tissue | Stage II cap tissue | 6.76 | 2.92 | 10.60 |
| DIF_gill_tissue | Stage II gill tissue | 7.11 | 3.04 | 11.17 |
| YFB_stipe_center | Young fruiting body stipe center | 9.20 | 4.17 | 14.23 |
| YFB_stipe_shell | Young fruiting body stipe shell | 10.36 | 4.79 | 15.92 |
| YFB_stipe_skin | Young fruiting body stipe skin | 11.78 | 5.55 | 18.02 |
| YFB_cap_skin | Young fruiting body cap skin | 6.83 | 2.93 | 10.72 |
| YFB_cap_tissue | Young fruiting body cap tissue | 8.15 | 3.65 | 12.65 |
| YFB_gill_tissue | Young fruiting body gill tissue | 8.17 | 3.63 | 12.71 |
| YFB_veil | Young fruiting body veil | 8.16 | 3.66 | 12.65 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.002084 | yes |
| Casing | YFB_stipe_center | 0.016386 | yes |
| Casing | YFB_stipe_shell | 0.059712 | no |
| Casing | YFB_stipe_skin | 0.134423 | no |
| Casing | YFB_cap_skin | 0.004160 | yes |
| Casing | YFB_cap_tissue | 0.005671 | yes |
| Casing | YFB_gill_tissue | 0.006032 | yes |
| Casing | YFB_veil | 0.004928 | yes |
| Casing | Initials | 0.282109 | no |
| Casing | Pileal_Stipeal_center | 0.034142 | yes |
| Casing | Pileal_Stipeal_shell | 0.008791 | yes |
| Casing | DIF_stipe_center | 0.005671 | yes |
| Casing | DIF_stipe_shell | 0.028918 | yes |
| Casing | DIF_stipe_skin | 0.076626 | no |
| Casing | DIF_cap_skin | 0.000613 | yes |
| Casing | DIF_cap_tissue | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_center | 0.630458 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.424073 | no |
| DIF_gill_tissue | YFB_stipe_skin | 0.219193 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.959683 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.839038 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.831718 | no |
| DIF_gill_tissue | YFB_veil | 0.836647 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.858736 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.626328 | no |
| YFB_stipe_center | YFB_cap_skin | 0.562185 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.854907 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.855156 | no |
| YFB_stipe_center | YFB_veil | 0.856061 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.837938 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.355789 | no |
| YFB_stipe_shell | YFB_cap_tissue | 0.650675 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.652200 | no |
| YFB_stipe_shell | YFB_veil | 0.654205 | no |
| YFB_stipe_skin | YFB_cap_skin | 0.169195 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.395048 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.399060 | no |
| YFB_stipe_skin | YFB_veil | 0.399688 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.771379 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.765740 | no |
| YFB_cap_skin | YFB_veil | 0.770908 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.997921 | no |
| YFB_cap_tissue | YFB_veil | 0.997956 | no |
| YFB_gill_tissue | YFB_veil | 0.997675 | no |
| Initials | DIF_gill_tissue | 0.000613 | yes |
| Initials | YFB_stipe_center | 0.000613 | yes |
| Initials | YFB_stipe_shell | 0.000613 | yes |
| Initials | YFB_stipe_skin | 0.002525 | yes |
| Initials | YFB_cap_skin | 0.000613 | yes |
| Initials | YFB_cap_tissue | 0.000613 | yes |
| Initials | YFB_gill_tissue | 0.000613 | yes |
| Initials | YFB_veil | 0.000613 | yes |
| Initials | Pileal_Stipeal_center | 0.000613 | yes |
| Initials | Pileal_Stipeal_shell | 0.000613 | yes |
| Initials | DIF_stipe_center | 0.000613 | yes |
| Initials | DIF_stipe_shell | 0.000613 | yes |
| Initials | DIF_stipe_skin | 0.001140 | yes |
| Initials | DIF_cap_skin | 0.000613 | yes |
| Initials | DIF_cap_tissue | 0.000613 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.544115 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.943631 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.925725 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.721760 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.472666 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.771008 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.771411 | no |
| Pileal_Stipeal_center | YFB_veil | 0.773149 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.754255 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.755394 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.998270 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.855358 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.096785 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.449718 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.859199 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.834057 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.636136 | no |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.384415 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.802005 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.985183 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.982965 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.984431 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.994501 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.755464 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.530958 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.286315 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.779718 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.846689 | no |
| DIF_stipe_center | YFB_stipe_center | 0.836406 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.635478 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.380708 | no |
| DIF_stipe_center | YFB_cap_skin | 0.784726 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.989110 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.986937 | no |
| DIF_stipe_center | YFB_veil | 0.988436 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.754661 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.528926 | no |
| DIF_stipe_center | DIF_cap_skin | 0.265645 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.762913 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.549668 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.946926 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.924139 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.720198 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.475092 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.777162 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.777215 | no |
| DIF_stipe_shell | YFB_veil | 0.778468 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.854603 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.096624 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.453226 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.329583 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.771646 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.948135 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.903255 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.263990 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.547977 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.549137 | no |
| DIF_stipe_skin | YFB_veil | 0.550196 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.038278 | yes |
| DIF_stipe_skin | DIF_cap_tissue | 0.246933 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.476718 | no |
| DIF_cap_skin | YFB_stipe_center | 0.119615 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.058732 | no |
| DIF_cap_skin | YFB_stipe_skin | 0.019987 | yes |
| DIF_cap_skin | YFB_cap_skin | 0.539308 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.248439 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.242880 | no |
| DIF_cap_skin | YFB_veil | 0.248129 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.552071 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.948233 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.534954 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.341051 | no |
| DIF_cap_tissue | YFB_stipe_skin | 0.161697 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.988700 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.754590 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.748765 | no |
| DIF_cap_tissue | YFB_veil | 0.754370 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|017240 MAVGCSLDFSYSFSNTSHLLSYDLCPLFSQHPSLRHEISEDTLPTRTNYVYEIALGKGIQKDGTLPEDLQCPHDS LVCMRAINTRPNHPSEPPRILQVIPVATRHTKPKFRIAKTTTGTDIQEPHLQLTVQGSEYMGMKQKAVFHIYCDE KLHEASTSGQLDHLYQWKGSHVFSWRSEHGCPKITTHDSKDDSDKTPDSHEEEENETTPPANVHEDEDSIIKTPS QTLIWFISLTASILLAIAFRFVFLKRYKHHILQLIHKLPISRRRHRSGEYDFLLEDIASEESTVYSPGFRKYDAV * |
| Coding | >AgabiH97|017240 ATGGCTGTGGGATGTTCTCTCGACTTCAGCTACTCATTTTCCAACACATCTCATCTTCTTTCCTATGACTTGTGC CCACTGTTTTCGCAGCATCCATCGTTGAGACACGAAATCAGTGAAGATACGCTACCGACGCGCACAAATTATGTT TATGAAATAGCTTTGGGGAAGGGTATCCAGAAGGATGGTACCTTACCTGAGGACTTGCAGTGCCCCCATGATTCG CTAGTATGTATGCGAGCCATTAACACTCGACCAAATCATCCTTCGGAGCCGCCAAGAATTCTTCAGGTCATCCCT GTCGCAACCCGTCACACCAAACCAAAGTTTCGTATCGCAAAGACAACTACGGGAACAGATATACAAGAGCCTCAT CTCCAACTCACCGTTCAAGGATCAGAATATATGGGTATGAAGCAAAAAGCTGTATTTCACATTTACTGTGATGAG AAATTACATGAAGCGTCAACTTCAGGGCAGCTCGATCATTTGTACCAATGGAAGGGATCTCATGTTTTCAGCTGG AGATCTGAACATGGTTGCCCAAAAATCACTACTCACGACAGCAAGGACGACTCCGACAAGACGCCAGACAGCCAT GAAGAAGAGGAGAACGAAACCACCCCGCCGGCCAATGTGCATGAAGATGAAGACTCAATCATAAAAACACCATCA CAAACACTCATATGGTTTATCTCATTAACGGCTAGCATTCTTCTCGCCATCGCATTCCGATTTGTCTTTCTCAAA CGATACAAGCATCATATCCTTCAATTGATCCACAAACTCCCTATATCTAGACGTCGTCATCGATCCGGTGAATAC GACTTTCTACTAGAAGATATCGCATCGGAGGAATCCACCGTTTATTCGCCCGGATTTAGAAAATACGACGCAGTA TGA |
| Transcript | >AgabiH97|017240 ATGGCTGTGGGATGTTCTCTCGACTTCAGCTACTCATTTTCCAACACATCTCATCTTCTTTCCTATGACTTGTGC CCACTGTTTTCGCAGCATCCATCGTTGAGACACGAAATCAGTGAAGATACGCTACCGACGCGCACAAATTATGTT TATGAAATAGCTTTGGGGAAGGGTATCCAGAAGGATGGTACCTTACCTGAGGACTTGCAGTGCCCCCATGATTCG CTAGTATGTATGCGAGCCATTAACACTCGACCAAATCATCCTTCGGAGCCGCCAAGAATTCTTCAGGTCATCCCT GTCGCAACCCGTCACACCAAACCAAAGTTTCGTATCGCAAAGACAACTACGGGAACAGATATACAAGAGCCTCAT CTCCAACTCACCGTTCAAGGATCAGAATATATGGGTATGAAGCAAAAAGCTGTATTTCACATTTACTGTGATGAG AAATTACATGAAGCGTCAACTTCAGGGCAGCTCGATCATTTGTACCAATGGAAGGGATCTCATGTTTTCAGCTGG AGATCTGAACATGGTTGCCCAAAAATCACTACTCACGACAGCAAGGACGACTCCGACAAGACGCCAGACAGCCAT GAAGAAGAGGAGAACGAAACCACCCCGCCGGCCAATGTGCATGAAGATGAAGACTCAATCATAAAAACACCATCA CAAACACTCATATGGTTTATCTCATTAACGGCTAGCATTCTTCTCGCCATCGCATTCCGATTTGTCTTTCTCAAA CGATACAAGCATCATATCCTTCAATTGATCCACAAACTCCCTATATCTAGACGTCGTCATCGATCCGGTGAATAC GACTTTCTACTAGAAGATATCGCATCGGAGGAATCCACCGTTTATTCGCCCGGATTTAGAAAATACGACGCAGTA TGA |
| Gene | >AgabiH97|017240 ATGGCTGTGGGATGTTCTCTCGACTTCAGCTACTCATTTTCCAACACATCTCATCTTCTTTCCTATGACTTGTGC CCACTGTTTTCGCAGCATCCATCGTTGAGACACGAAATCAGTGAAGATACGCTACCGACGCGCACAAATTATGTT TATGAAATAGCTTTGGGGAAGGGTATCCAGAAGGATGGTACCTTACCTGAGGACTTGCAGGTTCGTTTGCCTCAC TTACTGTTACGAATCAGATACTCACAATGTTTGATCAAGTGCCCCCATGATTCGCTAGTATGTATGCGAGCCATT AACACTCGACCAAATCATCCTTCGGAGCCGCCAAGAATTCTTCAGGTCATCCCTGTCGCAACCCGTCACACCAAA CCAAAGTTTCGTATCGCAAAGACAACTACGGGAACAGATATACAAGAGCCTCATCTCCAACTCACCGTTCAAGGA TCAGAATATATGGGTATGAAGCAAAAAGCTGTATTTCACATTTACTGTGATGAGGTGAGACGGCACGTATCCATA ATTTTGATATCAGTTAATTACATATCTCTAGAAATTACATGAAGCGTCAACTTCAGGGCAGCTCGATCATTTGTA CCAATGGAAGGGATCTCATGTTTTCAGCTGGAGATCTGAACATGGTTGCCCAAAAATCACTACTCACGACAGCAA GGACGACTCCGACAAGACGCCAGACAGCCATGAAGAAGAGGAGAACGAAACCACCCCGCCGGCCAATGTGCATGA AGATGAAGACTCAATCATAAAAACACCATCACAAACACTCATATGGTTTATCTCATTAACGGCTAGCATTCTGTT CGTTTTATCTTTCACTATCTCAAAACCGCATCATACCAATCTCAAAACTTTTGACAGTCTCGCCATCGCATTCCG ATTTGTCTTTCTCAAACGATACAAGCATCATATCCTTCAATTGATCCACAAACTCCCTATATCTAGACGTCGTCA TCGATCCGGTGAATACGACTTTCTACTAGAAGATATCGCATCGGAGGAATCCACCGTTTATTCGCCCGGATTTAG AAAATACGACGCAGTATGA |