Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|016860
Gene name
Locationscaffold_10:521871..522622
Strand+
Gene length (bp)751
Transcript length (bp)543
Coding sequence length (bp)543
Protein length (aa) 181

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10342 Kre9_KNH Kre9/KNH-like N-terminal Ig-like domain 1.7E-05 27 120

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|016860
MVALSALALALSAASLAAAQSTFQITNPSADHWWVAESSNVLTWDCKNNPHTTFGVFIANADQTLFAGDLAIIPQ
QPNADCSKEITHNQVNQPPGSGYIIKFANAVNSSEVFAQSDQFEIRPLGSAFPTTSSPAGNSPSNTADNTAAGAS
STDTPNGAASLKTLGVGFTAAAAGALAYLM*
Coding >AgabiH97|016860
ATGGTCGCCCTCTCCGCCCTCGCCCTTGCTCTCTCTGCCGCCAGCCTTGCCGCTGCCCAGTCCACCTTCCAGATC
ACCAATCCCTCCGCGGACCACTGGTGGGTTGCTGAATCGTCGAATGTTCTTACTTGGGACTGCAAGAACAACCCA
CATACCACCTTTGGTGTTTTCATTGCCAACGCAGACCAAACATTGTTTGCAGGAGACCTCGCTATTATCCCTCAA
CAGCCTAATGCCGATTGCTCCAAGGAAATCACTCACAACCAAGTCAACCAACCTCCCGGCAGTGGCTACATAATC
AAGTTCGCCAACGCTGTCAACAGCTCAGAGGTCTTTGCTCAATCTGACCAGTTCGAGATCAGACCTCTCGGTTCT
GCGTTCCCCACTACCTCGTCACCAGCAGGTAATAGCCCATCCAATACCGCAGACAACACAGCCGCCGGTGCTTCA
TCCACTGACACACCCAACGGCGCCGCCTCTCTCAAAACTCTCGGTGTCGGTTTCACCGCTGCCGCAGCTGGTGCC
TTGGCGTATCTCATGTGA
Transcript >AgabiH97|016860
ATGGTCGCCCTCTCCGCCCTCGCCCTTGCTCTCTCTGCCGCCAGCCTTGCCGCTGCCCAGTCCACCTTCCAGATC
ACCAATCCCTCCGCGGACCACTGGTGGGTTGCTGAATCGTCGAATGTTCTTACTTGGGACTGCAAGAACAACCCA
CATACCACCTTTGGTGTTTTCATTGCCAACGCAGACCAAACATTGTTTGCAGGAGACCTCGCTATTATCCCTCAA
CAGCCTAATGCCGATTGCTCCAAGGAAATCACTCACAACCAAGTCAACCAACCTCCCGGCAGTGGCTACATAATC
AAGTTCGCCAACGCTGTCAACAGCTCAGAGGTCTTTGCTCAATCTGACCAGTTCGAGATCAGACCTCTCGGTTCT
GCGTTCCCCACTACCTCGTCACCAGCAGGTAATAGCCCATCCAATACCGCAGACAACACAGCCGCCGGTGCTTCA
TCCACTGACACACCCAACGGCGCCGCCTCTCTCAAAACTCTCGGTGTCGGTTTCACCGCTGCCGCAGCTGGTGCC
TTGGCGTATCTCATGTGA
Gene >AgabiH97|016860
ATGGTCGCCCTCTCCGCCCTCGCCCTTGCTCTCTCTGCCGCCAGCCTTGCCGCTGCCCAGTCCACCTTCCAGATC
ACCAATCCCTCCGCGGACCACTGGTGGGGTGAGCTGTCGTCTTTTCTTCCTAGCTACAAACACAACTGACAGAAA
CTAGTTGCTGAATCGTCGAATGTTCTTACTTGGGACTGCAAGAACAACCCACATACCACCTTTGGTGTTTTGTAC
GTGTCTGGCTCCCCACTTCACTGGCCTGTTCTCACGCCTCTCTCTCGTCTAGCATTGCCAACGCAGTATGGCTAC
TCGTTAGCATAAAATAAAATAATTATACTCATCCATTTCACAGGACCAAACATTGTTTGCAGGAGACCTCGCTAT
TATCCCTCAACAGCCTAATGCCGATTGCTCCAAGGAAATCACTCACAACCAAGTCAACCAACCTCCCGGCAGTGG
CTACATAATCAAGTTCGCCAACGCTGTCAACAGCTCAGAGGTACGTTTTTCCCGCTCTTCGCTCCAACCCGTGCT
GATCCTTTCAAAGGTCTTTGCTCAATCTGACCAGTTCGAGATCAGACCTCTCGGTTCTGCGTTCCCCACTACCTC
GTCACCAGCAGGTAATAGCCCATCCAATACCGCAGACAACACAGCCGCCGGTGCTTCATCCACTGACACACCCAA
CGGCGCCGCCTCTCTCAAAACTCTCGGTGTCGGTTTCACCGCTGCCGCAGCTGGTGCCTTGGCGTATCTCATGTG
A

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail