Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|016350
Gene name
Locationscaffold_10:394375..394824
Strand+
Gene length (bp)449
Transcript length (bp)330
Coding sequence length (bp)330
Protein length (aa) 110

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01185 Hydrophobin Fungal hydrophobin 1.9E-09 31 105

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O13300|HYP3_AGABI Hydrophobin-3 OS=Agaricus bisporus GN=abh3 PE=3 SV=1 1 109 1.0E-06
sp|O74300|SC6_SCHCO Hydrophobin-6 OS=Schizophyllum commune GN=SC6 PE=3 SV=1 22 103 3.0E-06
sp|P04158|SC1_SCHCO Fruiting body protein SC1 OS=Schizophyllum commune GN=SC1 PE=2 SV=2 30 106 4.0E-06

GO

GO Term Description Terminal node
GO:0005199 structural constituent of cell wall Yes
GO:0009277 fungal-type cell wall Yes
GO:0005575 cellular_component No
GO:0003674 molecular_function No
GO:0005618 cell wall No
GO:0030312 external encapsulating structure No
GO:0005198 structural molecule activity No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|016350
MYSRLALFVLSACALGVVAADEPTTPPFIKCDIGEVYCCESIQGANSLVAHNLPSLLGLAAGASTGPVGVNCSDE
VRDILNCATQIACCTGPSFRRDLTTGCSPIDANV*
Coding >AgabiH97|016350
ATGTACTCCAGACTCGCTCTATTCGTCCTCTCCGCTTGTGCTCTCGGTGTTGTCGCAGCCGATGAGCCTACTACC
CCCCCATTTATTAAATGCGACATTGGCGAAGTCTACTGCTGTGAATCCATACAAGGTGCCAACTCCTTGGTTGCT
CATAATCTCCCTAGCTTGCTCGGCCTTGCCGCTGGAGCTTCAACTGGTCCGGTCGGTGTCAACTGTTCGGATGAG
GTTCGCGATATTCTTAACTGTGCCACGCAAATCGCTTGCTGCACCGGCCCCAGCTTCAGGCGCGACCTCACCACT
GGCTGCTCCCCCATCGACGCCAACGTCTAG
Transcript >AgabiH97|016350
ATGTACTCCAGACTCGCTCTATTCGTCCTCTCCGCTTGTGCTCTCGGTGTTGTCGCAGCCGATGAGCCTACTACC
CCCCCATTTATTAAATGCGACATTGGCGAAGTCTACTGCTGTGAATCCATACAAGGTGCCAACTCCTTGGTTGCT
CATAATCTCCCTAGCTTGCTCGGCCTTGCCGCTGGAGCTTCAACTGGTCCGGTCGGTGTCAACTGTTCGGATGAG
GTTCGCGATATTCTTAACTGTGCCACGCAAATCGCTTGCTGCACCGGCCCCAGCTTCAGGCGCGACCTCACCACT
GGCTGCTCCCCCATCGACGCCAACGTCTAG
Gene >AgabiH97|016350
ATGTACTCCAGACTCGCTCTATTCGTCCTCTCCGCTTGTGCTCTCGGTGTTGTCGCAGCCGATGAGCCTACTACC
CCCCCATTTATTAAATGCGACATTGGCGAAGTCTACTGCTGTTAGTCATTTATGGTAGCTCATTAACCCCCAAAA
TCTGACAATTCTTGTTTTTCAGGTGAATCCATACAAGGTGCCAACTCCTTGGTTGCTCATAATCTCCCTAGCTTG
CTCGGCCTTGCCGCTGGAGCTTCAACTGGTCCGGTCGGTGTCAACTGTTCGGATGAGGTTCGCGATATTCTTAAC
TGTGCCACGCAAATCGCTTGCTGCACCGGCCCCAGCTTCAGTAAGTTGCTTGGTCACCGGCAATGCGTGATCGAT
CCTACTAATAGTTTGCCATGTTATCAGGGCGCGACCTCACCACTGGCTGCTCCCCCATCGACGCCAACGTCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail