Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|016270
Gene name
Locationscaffold_10:363982..364444
Strand+
Gene length (bp)462
Transcript length (bp)348
Coding sequence length (bp)348
Protein length (aa) 116

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01185 Hydrophobin Fungal hydrophobin 8.0E-18 39 111

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|O13300|HYP3_AGABI Hydrophobin-3 OS=Agaricus bisporus GN=abh3 PE=3 SV=1 1 115 9.0E-23
sp|P04158|SC1_SCHCO Fruiting body protein SC1 OS=Schizophyllum commune GN=SC1 PE=2 SV=2 13 115 3.0E-16
sp|P16933|SC3_SCHCO Fruiting body protein SC3 OS=Schizophyllum commune GN=SC3 PE=1 SV=2 1 113 6.0E-15
sp|O74300|SC6_SCHCO Hydrophobin-6 OS=Schizophyllum commune GN=SC6 PE=3 SV=1 27 115 1.0E-14
sp|P49073|HYP2_AGABI Hydrophobin-2 OS=Agaricus bisporus GN=hypC PE=3 SV=2 1 115 9.0E-14
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Swissprot ID Swissprot Description Start End E-value
sp|O13300|HYP3_AGABI Hydrophobin-3 OS=Agaricus bisporus GN=abh3 PE=3 SV=1 1 115 9.0E-23
sp|P04158|SC1_SCHCO Fruiting body protein SC1 OS=Schizophyllum commune GN=SC1 PE=2 SV=2 13 115 3.0E-16
sp|P16933|SC3_SCHCO Fruiting body protein SC3 OS=Schizophyllum commune GN=SC3 PE=1 SV=2 1 113 6.0E-15
sp|O74300|SC6_SCHCO Hydrophobin-6 OS=Schizophyllum commune GN=SC6 PE=3 SV=1 27 115 1.0E-14
sp|P49073|HYP2_AGABI Hydrophobin-2 OS=Agaricus bisporus GN=hypC PE=3 SV=2 1 115 9.0E-14
sp|P49072|HYP1_AGABI Hydrophobin-1 OS=Agaricus bisporus GN=hypA PE=2 SV=1 25 115 2.0E-12
sp|O43122|HYP4_AGABI Hydrophobin-B OS=Agaricus bisporus GN=hypB PE=3 SV=1 34 115 2.0E-11
sp|P52749|HYP2_PISTI Hydrophobin-2 (Fragment) OS=Pisolithus tinctorius GN=HYD-2 PE=2 SV=1 34 114 8.0E-11
sp|P52748|HYP1_PISTI Hydrophobin-1 OS=Pisolithus tinctorius GN=HYD-1 PE=2 SV=1 16 114 5.0E-07
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GO

GO Term Description Terminal node
GO:0005199 structural constituent of cell wall Yes
GO:0009277 fungal-type cell wall Yes
GO:0005575 cellular_component No
GO:0003674 molecular_function No
GO:0005618 cell wall No
GO:0030312 external encapsulating structure No
GO:0005198 structural molecule activity No
GO:0110165 cellular anatomical entity No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.0795 0.0465 0.9429 0.0477 0.1052 0.0034 0.0456 0.1519 0.0813 0.0093

SignalP

SignalP signal predicted Location Score
Yes 1 - 20 0.99981

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 6433.00 2892.52 9973.49
Initials Initials knots 548.67 321.16 776.18
Pileal_Stipeal_center Stage I stipe center 443.95 218.54 669.35
Pileal_Stipeal_shell Stage I stipe shell 10.30 2.83 17.78
DIF_stipe_center Stage II stipe center 13.77 3.98 23.56
DIF_stipe_shell Stage II stipe shell 9.06 2.35 15.76
DIF_stipe_skin Stage II stipe skin 90.59 43.33 137.86
DIF_cap_skin Stage II cap skin 5.11 0.67 9.55
DIF_cap_tissue Stage II cap tissue 7.95 1.77 14.14
DIF_gill_tissue Stage II gill tissue 8.31 2.07 14.54
YFB_stipe_center Young fruiting body stipe center 4.77 0.71 8.83
YFB_stipe_shell Young fruiting body stipe shell 6.59 1.13 12.05
YFB_stipe_skin Young fruiting body stipe skin 134.79 69.27 200.31
YFB_cap_skin Young fruiting body cap skin 2.92 0.02 5.82
YFB_cap_tissue Young fruiting body cap tissue 3.71 0.23 7.19
YFB_gill_tissue Young fruiting body gill tissue 1.64 0.00 3.61
YFB_veil Young fruiting body veil 3.45 0.03 6.87

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.000613 yes
Casing YFB_stipe_center 0.000613 yes
Casing YFB_stipe_shell 0.000613 yes
Casing YFB_stipe_skin 0.000613 yes
Casing YFB_cap_skin 0.000613 yes
Casing YFB_cap_tissue 0.000613 yes
Casing YFB_gill_tissue 0.003365 yes
Casing YFB_veil 0.000613 yes
Casing Initials 0.000613 yes
Casing Pileal_Stipeal_center 0.000613 yes
Casing Pileal_Stipeal_shell 0.000613 yes
Casing DIF_stipe_center 0.000613 yes
Casing DIF_stipe_shell 0.000613 yes
Casing DIF_stipe_skin 0.000613 yes
Casing DIF_cap_skin 0.000613 yes
Casing DIF_cap_tissue 0.000613 yes
DIF_gill_tissue YFB_stipe_center 0.400834 no
DIF_gill_tissue YFB_stipe_shell 0.781981 no
DIF_gill_tissue YFB_stipe_skin 0.000613 yes
DIF_gill_tissue YFB_cap_skin 0.110551 no
DIF_gill_tissue YFB_cap_tissue 0.203521 no
DIF_gill_tissue YFB_gill_tissue 0.054776 no
DIF_gill_tissue YFB_veil 0.174239 no
YFB_stipe_center YFB_stipe_shell 0.693722 no
YFB_stipe_center YFB_stipe_skin 0.000613 yes
YFB_stipe_center YFB_cap_skin 0.572707 no
YFB_stipe_center YFB_cap_tissue 0.807659 no
YFB_stipe_center YFB_gill_tissue 0.203521 no
YFB_stipe_center YFB_veil 0.735833 no
YFB_stipe_shell YFB_stipe_skin 0.000613 yes
YFB_stipe_shell YFB_cap_skin 0.239956 no
YFB_stipe_shell YFB_cap_tissue 0.427563 no
YFB_stipe_shell YFB_gill_tissue 0.088442 no
YFB_stipe_shell YFB_veil 0.367818 no
YFB_stipe_skin YFB_cap_skin 0.000613 yes
YFB_stipe_skin YFB_cap_tissue 0.000613 yes
YFB_stipe_skin YFB_gill_tissue 0.003365 yes
YFB_stipe_skin YFB_veil 0.000613 yes
YFB_cap_skin YFB_cap_tissue 0.834707 no
YFB_cap_skin YFB_gill_tissue 0.585032 no
YFB_cap_skin YFB_veil 0.894108 no
YFB_cap_tissue YFB_gill_tissue 0.362560 no
YFB_cap_tissue YFB_veil 0.955580 no
YFB_gill_tissue YFB_veil 0.442957 no
Initials DIF_gill_tissue 0.000613 yes
Initials YFB_stipe_center 0.000613 yes
Initials YFB_stipe_shell 0.000613 yes
Initials YFB_stipe_skin 0.000613 yes
Initials YFB_cap_skin 0.000613 yes
Initials YFB_cap_tissue 0.000613 yes
Initials YFB_gill_tissue 0.003365 yes
Initials YFB_veil 0.000613 yes
Initials Pileal_Stipeal_center 0.623731 no
Initials Pileal_Stipeal_shell 0.000613 yes
Initials DIF_stipe_center 0.000613 yes
Initials DIF_stipe_shell 0.000613 yes
Initials DIF_stipe_skin 0.000613 yes
Initials DIF_cap_skin 0.000613 yes
Initials DIF_cap_tissue 0.000613 yes
Pileal_Stipeal_center DIF_gill_tissue 0.000613 yes
Pileal_Stipeal_center YFB_stipe_center 0.000613 yes
Pileal_Stipeal_center YFB_stipe_shell 0.000613 yes
Pileal_Stipeal_center YFB_stipe_skin 0.000613 yes
Pileal_Stipeal_center YFB_cap_skin 0.000613 yes
Pileal_Stipeal_center YFB_cap_tissue 0.000613 yes
Pileal_Stipeal_center YFB_gill_tissue 0.003365 yes
Pileal_Stipeal_center YFB_veil 0.000613 yes
Pileal_Stipeal_center Pileal_Stipeal_shell 0.000613 yes
Pileal_Stipeal_center DIF_stipe_center 0.000613 yes
Pileal_Stipeal_center DIF_stipe_shell 0.000613 yes
Pileal_Stipeal_center DIF_stipe_skin 0.000613 yes
Pileal_Stipeal_center DIF_cap_skin 0.000613 yes
Pileal_Stipeal_center DIF_cap_tissue 0.000613 yes
Pileal_Stipeal_shell DIF_gill_tissue 0.792344 no
Pileal_Stipeal_shell YFB_stipe_center 0.193249 no
Pileal_Stipeal_shell YFB_stipe_shell 0.510283 no
Pileal_Stipeal_shell YFB_stipe_skin 0.000613 yes
Pileal_Stipeal_shell YFB_cap_skin 0.056170 no
Pileal_Stipeal_shell YFB_cap_tissue 0.091998 no
Pileal_Stipeal_shell YFB_gill_tissue 0.036455 yes
Pileal_Stipeal_shell YFB_veil 0.092675 no
Pileal_Stipeal_shell DIF_stipe_center 0.696294 no
Pileal_Stipeal_shell DIF_stipe_shell 0.892837 no
Pileal_Stipeal_shell DIF_stipe_skin 0.000613 yes
Pileal_Stipeal_shell DIF_cap_skin 0.281054 no
Pileal_Stipeal_shell DIF_cap_tissue 0.754224 no
DIF_stipe_center DIF_gill_tissue 0.398838 no
DIF_stipe_center YFB_stipe_center 0.053965 no
DIF_stipe_center YFB_stipe_shell 0.181569 no
DIF_stipe_center YFB_stipe_skin 0.000613 yes
DIF_stipe_center YFB_cap_skin 0.021583 yes
DIF_stipe_center YFB_cap_tissue 0.025205 yes
DIF_stipe_center YFB_gill_tissue 0.020523 yes
DIF_stipe_center YFB_veil 0.035309 yes
DIF_stipe_center DIF_stipe_shell 0.520960 no
DIF_stipe_center DIF_stipe_skin 0.000613 yes
DIF_stipe_center DIF_cap_skin 0.093666 no
DIF_stipe_center DIF_cap_tissue 0.364332 no
DIF_stipe_shell DIF_gill_tissue 0.929979 no
DIF_stipe_shell YFB_stipe_center 0.320464 no
DIF_stipe_shell YFB_stipe_shell 0.677752 no
DIF_stipe_shell YFB_stipe_skin 0.000613 yes
DIF_stipe_shell YFB_cap_skin 0.088950 no
DIF_stipe_shell YFB_cap_tissue 0.155040 no
DIF_stipe_shell YFB_gill_tissue 0.046745 yes
DIF_stipe_shell YFB_veil 0.132420 no
DIF_stipe_shell DIF_stipe_skin 0.000613 yes
DIF_stipe_shell DIF_cap_skin 0.419555 no
DIF_stipe_shell DIF_cap_tissue 0.893812 no
DIF_stipe_skin DIF_gill_tissue 0.000613 yes
DIF_stipe_skin YFB_stipe_center 0.000613 yes
DIF_stipe_skin YFB_stipe_shell 0.000613 yes
DIF_stipe_skin YFB_stipe_skin 0.316421 no
DIF_stipe_skin YFB_cap_skin 0.000613 yes
DIF_stipe_skin YFB_cap_tissue 0.000613 yes
DIF_stipe_skin YFB_gill_tissue 0.003365 yes
DIF_stipe_skin YFB_veil 0.000613 yes
DIF_stipe_skin DIF_cap_skin 0.000613 yes
DIF_stipe_skin DIF_cap_tissue 0.000613 yes
DIF_cap_skin DIF_gill_tissue 0.501663 no
DIF_cap_skin YFB_stipe_center 0.953843 no
DIF_cap_skin YFB_stipe_shell 0.781036 no
DIF_cap_skin YFB_stipe_skin 0.000613 yes
DIF_cap_skin YFB_cap_skin 0.516489 no
DIF_cap_skin YFB_cap_tissue 0.743110 no
DIF_cap_skin YFB_gill_tissue 0.178069 no
DIF_cap_skin YFB_veil 0.676057 no
DIF_cap_skin DIF_cap_tissue 0.569594 no
DIF_cap_tissue DIF_gill_tissue 0.966776 no
DIF_cap_tissue YFB_stipe_center 0.465386 no
DIF_cap_tissue YFB_stipe_shell 0.836974 no
DIF_cap_tissue YFB_stipe_skin 0.000613 yes
DIF_cap_tissue YFB_cap_skin 0.137455 no
DIF_cap_tissue YFB_cap_tissue 0.250684 no
DIF_cap_tissue YFB_gill_tissue 0.063183 no
DIF_cap_tissue YFB_veil 0.214707 no

Orthologs

Orthofinder run ID1
Orthogroup2
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|016220
Agaricus bisporus var bisporus H39 AgabiH39|458800
Agaricus bisporus var bisporus H39 AgabiH39|371400
Agaricus bisporus var bisporus H39 AgabiH39|371300
Agaricus bisporus var bisporus H39 AgabiH39|371200
Agaricus bisporus var bisporus H39 AgabiH39|370700
Agaricus bisporus var bisporus H39 AgabiH39|370000
Agaricus bisporus var bisporus H39 AgabiH39|089730
Agaricus bisporus var bisporus H39 AgabiH39|371000
Agaricus bisporus var bisporus H39 AgabiH39|089270
Agaricus bisporus var bisporus H39 AgabiH39|054400
Agaricus bisporus var bisporus H39 AgabiH39|054390
Agaricus bisporus var bisporus H39 AgabiH39|029340
Agaricus bisporus var bisporus H39 AgabiH39|024730
Agaricus bisporus var bisporus H39 AgabiH39|016340
Agaricus bisporus var bisporus H39 AgabiH39|016270
Agaricus bisporus var bisporus H39 AgabiH39|089660
Agaricus bisporus var bisporus H97 AgabiH97|089610
Agaricus bisporus var bisporus H97 AgabiH97|089730
Agaricus bisporus var bisporus H97 AgabiH97|089720
Agaricus bisporus var bisporus H97 AgabiH97|089680
Agaricus bisporus var bisporus H97 AgabiH97|089670
Agaricus bisporus var bisporus H97 AgabiH97|089660
Agaricus bisporus var bisporus H97 AgabiH97|089650
Agaricus bisporus var bisporus H97 AgabiH97|089540
Agaricus bisporus var bisporus H97 AgabiH97|016220
Agaricus bisporus var bisporus H97 AgabiH97|054400
Agaricus bisporus var bisporus H97 AgabiH97|054390
Agaricus bisporus var bisporus H97 AgabiH97|029340
Agaricus bisporus var bisporus H97 AgabiH97|024730
Agaricus bisporus var bisporus H97 AgabiH97|016340
Agaricus bisporus var bisporus H97 AgabiH97|016270 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|115060
Agaricus bisporus var bisporus H97 AgabiH97|089270
Rhodonia placenta FPRL280 RhoplFPRL280|73_20

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|016270
MYSKLALFVLSAFALGVVAADEPAAAPAPPAPVTNNSQCNVGTLHCCNSAQDVKSSAVQTLAHSLGVDLGGVNGL
VGLTCNVLGGSSCSAQPVCCTGNSFGGVIVVGCSPINVSL*
Coding >AgabiH97|016270
ATGTACTCCAAGCTCGCTCTCTTCGTCCTCTCCGCATTTGCTCTCGGTGTCGTCGCAGCCGATGAGCCTGCTGCT
GCCCCCGCTCCTCCCGCACCTGTTACCAACAACTCCCAATGCAATGTTGGCACACTCCACTGCTGTAATTCCGCC
CAAGATGTCAAGTCCTCGGCCGTTCAAACACTCGCTCACTCGCTCGGTGTTGACCTCGGAGGCGTTAATGGTCTA
GTCGGTCTCACCTGTAACGTCCTCGGCGGCAGCAGCTGTTCCGCTCAACCCGTTTGCTGCACCGGCAACAGCTTC
GGTGGCGTCATCGTCGTTGGCTGCTCCCCCATCAACGTCAGCCTCTAG
Transcript >AgabiH97|016270
ATGTACTCCAAGCTCGCTCTCTTCGTCCTCTCCGCATTTGCTCTCGGTGTCGTCGCAGCCGATGAGCCTGCTGCT
GCCCCCGCTCCTCCCGCACCTGTTACCAACAACTCCCAATGCAATGTTGGCACACTCCACTGCTGTAATTCCGCC
CAAGATGTCAAGTCCTCGGCCGTTCAAACACTCGCTCACTCGCTCGGTGTTGACCTCGGAGGCGTTAATGGTCTA
GTCGGTCTCACCTGTAACGTCCTCGGCGGCAGCAGCTGTTCCGCTCAACCCGTTTGCTGCACCGGCAACAGCTTC
GGTGGCGTCATCGTCGTTGGCTGCTCCCCCATCAACGTCAGCCTCTAG
Gene >AgabiH97|016270
ATGTACTCCAAGCTCGCTCTCTTCGTCCTCTCCGCATTTGCTCTCGGTGTCGTCGCAGCCGATGAGCCTGCTGCT
GCCCCCGCTCCTCCCGCACCTGTTACCAACAACTCCCAATGCAATGTTGGCACACTCCACTGCTGTTAGTCATTT
ATCGCATCTTGTAAATTGCTAGGAAATCTGACAATAGTTACTATTTGAAGGTAATTCCGCCCAAGATGTCAAGTC
CTCGGCCGTTCAAACACTCGCTCACTCGCTCGGTGTTGACCTCGGAGGCGTTAATGGTCTAGTCGGTCTCACCTG
TAACGTCCTCGGCGGCAGCAGCTGTTCCGCTCAACCCGTTTGCTGCACCGGCAACAGCTTCGGTGAGTTTCTTGG
TAGTGCATGATTGAATATGCTAATAGACTTGTGTTATCAGGTGGCGTCATCGTCGTTGGCTGCTCCCCCATCAAC
GTCAGCCTCTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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