Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|016230
Gene name
Locationscaffold_10:358444..358891
Strand+
Gene length (bp)447
Transcript length (bp)327
Coding sequence length (bp)327
Protein length (aa) 109

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01185 Hydrophobin Fungal hydrophobin 2.3E-12 31 106

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O13300|HYP3_AGABI Hydrophobin-3 OS=Agaricus bisporus GN=abh3 PE=3 SV=1 1 108 3.0E-12
sp|P04158|SC1_SCHCO Fruiting body protein SC1 OS=Schizophyllum commune GN=SC1 PE=2 SV=2 4 108 7.0E-09
sp|P49072|HYP1_AGABI Hydrophobin-1 OS=Agaricus bisporus GN=hypA PE=2 SV=1 1 108 2.0E-06
sp|P16933|SC3_SCHCO Fruiting body protein SC3 OS=Schizophyllum commune GN=SC3 PE=1 SV=2 30 108 3.0E-06

GO

GO Term Description Terminal node
GO:0005199 structural constituent of cell wall Yes
GO:0009277 fungal-type cell wall Yes
GO:0005575 cellular_component No
GO:0003674 molecular_function No
GO:0005618 cell wall No
GO:0030312 external encapsulating structure No
GO:0005198 structural molecule activity No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 22 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|016230
MYSKFALSVVSAFALITAVAASPTGDIDSTCDVGTFYCCHGVQDAHTSTVTKIALLLHIDLGNVTGPVGLSCRDD
IDSSSCTDTQPLCCTGENFLEGIIVAGCSPISL*
Coding >AgabiH97|016230
ATGTACTCCAAATTCGCTCTCTCCGTCGTTTCCGCTTTCGCTCTTATCACTGCTGTCGCAGCTTCACCTACTGGT
GACATTGATTCCACATGCGATGTTGGCACATTCTACTGCTGTCATGGCGTCCAAGATGCCCACACCTCGACCGTC
ACTAAAATCGCTTTGTTGCTCCACATTGACCTTGGGAATGTTACTGGTCCAGTCGGTCTCTCCTGCCGTGACGAT
ATCGATAGTAGCAGCTGCACTGATACTCAGCCTCTTTGCTGCACTGGTGAAAACTTCTTGGAAGGCATCATCGTT
GCTGGCTGCTCCCCCATCAGCCTCTAG
Transcript >AgabiH97|016230
ATGTACTCCAAATTCGCTCTCTCCGTCGTTTCCGCTTTCGCTCTTATCACTGCTGTCGCAGCTTCACCTACTGGT
GACATTGATTCCACATGCGATGTTGGCACATTCTACTGCTGTCATGGCGTCCAAGATGCCCACACCTCGACCGTC
ACTAAAATCGCTTTGTTGCTCCACATTGACCTTGGGAATGTTACTGGTCCAGTCGGTCTCTCCTGCCGTGACGAT
ATCGATAGTAGCAGCTGCACTGATACTCAGCCTCTTTGCTGCACTGGTGAAAACTTCTTGGAAGGCATCATCGTT
GCTGGCTGCTCCCCCATCAGCCTCTAG
Gene >AgabiH97|016230
ATGTACTCCAAATTCGCTCTCTCCGTCGTTTCCGCTTTCGCTCTTATCACTGCTGTCGCAGCTTCACCTACTGGT
GACATTGATTCCACATGCGATGTTGGCACATTCTACTGCTGTTCGTGTTCAATCGCGCCTTTTTCATTTTCAAAC
CTCACACGTTTATTTTTGAAGGTCATGGCGTCCAAGATGCCCACACCTCGACCGTCACTAAAATCGCTTTGTTGC
TCCACATTGACCTTGGGAATGTTACTGGTCCAGTCGGTCTCTCCTGCCGTGACGATATCGATAGTAGCAGCTGCA
CTGATACTCAGCCTCTTTGCTGCACTGGTGAAAACTTCTGTGAGTTTCTTGTCATAGACATGGTAGTGTTTTAAT
GAGAATACTGATATATGCGTGTTATCAGTGGAAGGCATCATCGTTGCTGGCTGCTCCCCCATCAGCCTCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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