Protein ID | AgabiH97|015390 |
Gene name | |
Location | scaffold_10:136709..137634 |
Strand | - |
Gene length (bp) | 925 |
Transcript length (bp) | 708 |
Coding sequence length (bp) | 708 |
Protein length (aa) | 236 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF05724 | TPMT | Thiopurine S-methyltransferase (TPMT) | 2.6E-32 | 32 | 208 |
PF13649 | Methyltransf_25 | Methyltransferase domain | 7.0E-11 | 79 | 172 |
PF13847 | Methyltransf_31 | Methyltransferase domain | 9.1E-09 | 78 | 176 |
PF08241 | Methyltransf_11 | Methyltransferase domain | 1.5E-07 | 77 | 175 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q6AWU6|HOL3_ARATH | Probable thiol methyltransferase 2 OS=Arabidopsis thaliana GN=HOL3 PE=1 SV=1 | 24 | 234 | 1.0E-40 |
sp|Q93V78|TMT1_BRAOL | Thiocyanate methyltransferase 1 OS=Brassica oleracea GN=TMT1 PE=1 SV=1 | 19 | 232 | 2.0E-35 |
sp|Q93XC4|TMT2_BRAOL | Probable thiocyanate methyltransferase 2 OS=Brassica oleracea GN=TMT2 PE=2 SV=1 | 20 | 232 | 2.0E-35 |
sp|O80562|HOL2_ARATH | Probable thiol methyltransferase 1 OS=Arabidopsis thaliana GN=HOL2 PE=1 SV=1 | 35 | 232 | 4.0E-32 |
sp|Q0WP12|HOL1_ARATH | Thiocyanate methyltransferase 1 OS=Arabidopsis thaliana GN=HOL1 PE=1 SV=1 | 19 | 225 | 3.0E-30 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q6AWU6|HOL3_ARATH | Probable thiol methyltransferase 2 OS=Arabidopsis thaliana GN=HOL3 PE=1 SV=1 | 24 | 234 | 1.0E-40 |
sp|Q93V78|TMT1_BRAOL | Thiocyanate methyltransferase 1 OS=Brassica oleracea GN=TMT1 PE=1 SV=1 | 19 | 232 | 2.0E-35 |
sp|Q93XC4|TMT2_BRAOL | Probable thiocyanate methyltransferase 2 OS=Brassica oleracea GN=TMT2 PE=2 SV=1 | 20 | 232 | 2.0E-35 |
sp|O80562|HOL2_ARATH | Probable thiol methyltransferase 1 OS=Arabidopsis thaliana GN=HOL2 PE=1 SV=1 | 35 | 232 | 4.0E-32 |
sp|Q0WP12|HOL1_ARATH | Thiocyanate methyltransferase 1 OS=Arabidopsis thaliana GN=HOL1 PE=1 SV=1 | 19 | 225 | 3.0E-30 |
sp|A1S2Z7|TPMT_SHEAM | Thiopurine S-methyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=tpm PE=3 SV=1 | 31 | 210 | 3.0E-11 |
sp|A5F1V4|TPMT_VIBC3 | Thiopurine S-methyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) GN=tpm PE=3 SV=1 | 31 | 193 | 4.0E-11 |
sp|Q0HR25|TPMT_SHESR | Thiopurine S-methyltransferase OS=Shewanella sp. (strain MR-7) GN=tpm PE=3 SV=1 | 31 | 207 | 6.0E-11 |
sp|C3LLS2|TPMT_VIBCM | Thiopurine S-methyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=tpm PE=3 SV=1 | 31 | 193 | 6.0E-11 |
sp|Q9KSN0|TPMT_VIBCH | Thiopurine S-methyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=tpm PE=3 SV=1 | 31 | 193 | 6.0E-11 |
sp|Q0HMQ6|TPMT_SHESM | Thiopurine S-methyltransferase OS=Shewanella sp. (strain MR-4) GN=tpm PE=3 SV=1 | 31 | 207 | 8.0E-11 |
sp|C3K732|TPMT_PSEFS | Thiopurine S-methyltransferase OS=Pseudomonas fluorescens (strain SBW25) GN=tpm PE=3 SV=1 | 31 | 193 | 5.0E-10 |
sp|A0KSQ0|TPMT_SHESA | Thiopurine S-methyltransferase OS=Shewanella sp. (strain ANA-3) GN=tpm PE=3 SV=1 | 31 | 207 | 4.0E-09 |
sp|B5FEQ9|TPMT_VIBFM | Thiopurine S-methyltransferase OS=Vibrio fischeri (strain MJ11) GN=tpm PE=3 SV=1 | 31 | 193 | 4.0E-09 |
sp|B7VPF3|TPMT_VIBTL | Thiopurine S-methyltransferase OS=Vibrio tasmaniensis (strain LGP32) GN=tpm PE=3 SV=1 | 32 | 193 | 4.0E-09 |
sp|Q5WSX9|TPMT_LEGPL | Thiopurine S-methyltransferase OS=Legionella pneumophila (strain Lens) GN=tpm PE=3 SV=1 | 35 | 215 | 5.0E-09 |
sp|Q87Q54|TPMT_VIBPA | Thiopurine S-methyltransferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=tpm PE=3 SV=1 | 69 | 193 | 6.0E-09 |
sp|Q3K932|TPMT_PSEPF | Thiopurine S-methyltransferase OS=Pseudomonas fluorescens (strain Pf0-1) GN=tpm PE=3 SV=1 | 31 | 193 | 7.0E-09 |
sp|Q5E4N9|TPMT_VIBF1 | Thiopurine S-methyltransferase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=tpm PE=3 SV=1 | 31 | 207 | 7.0E-09 |
sp|Q5X154|TPMT_LEGPA | Thiopurine S-methyltransferase OS=Legionella pneumophila (strain Paris) GN=tpm PE=3 SV=1 | 35 | 215 | 7.0E-09 |
sp|B6ENK8|TPMT_ALISL | Thiopurine S-methyltransferase OS=Aliivibrio salmonicida (strain LFI1238) GN=tpm PE=3 SV=1 | 35 | 193 | 2.0E-08 |
sp|Q5ZRP5|TPMT_LEGPH | Thiopurine S-methyltransferase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=tpm PE=3 SV=1 | 35 | 196 | 2.0E-08 |
sp|Q17QQ2|TPMT_BOVIN | Thiopurine S-methyltransferase OS=Bos taurus GN=TPMT PE=2 SV=1 | 35 | 193 | 3.0E-08 |
sp|B8ECC0|TPMT_SHEB2 | Thiopurine S-methyltransferase OS=Shewanella baltica (strain OS223) GN=tpm PE=3 SV=1 | 31 | 207 | 5.0E-08 |
sp|Q12RU3|TPMT_SHEDO | Thiopurine S-methyltransferase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=tpm PE=3 SV=1 | 31 | 207 | 6.0E-08 |
sp|A7MVH9|TPMT_VIBCB | Thiopurine S-methyltransferase OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=tpm PE=3 SV=1 | 69 | 200 | 6.0E-08 |
sp|Q6LRI5|TPMT_PHOPR | Thiopurine S-methyltransferase OS=Photobacterium profundum GN=tpm PE=3 SV=1 | 35 | 193 | 8.0E-08 |
sp|A3D007|TPMT_SHEB5 | Thiopurine S-methyltransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=tpm PE=3 SV=1 | 31 | 207 | 9.0E-08 |
sp|A6WSW9|TPMT_SHEB8 | Thiopurine S-methyltransferase OS=Shewanella baltica (strain OS185) GN=tpm PE=3 SV=1 | 31 | 207 | 1.0E-07 |
sp|B1KHT1|TPMT_SHEWM | Thiopurine S-methyltransferase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=tpm PE=3 SV=1 | 31 | 193 | 2.0E-07 |
sp|A5II06|TPMT_LEGPC | Thiopurine S-methyltransferase OS=Legionella pneumophila (strain Corby) GN=tpm PE=3 SV=1 | 35 | 215 | 2.0E-07 |
sp|Q8EJ86|TPMT_SHEON | Thiopurine S-methyltransferase OS=Shewanella oneidensis (strain MR-1) GN=tpm PE=3 SV=1 | 73 | 207 | 3.0E-07 |
sp|A1KG37|Y605_MYCBP | Uncharacterized protein BCG_0605c OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=BCG_0605c PE=1 SV=1 | 45 | 179 | 4.0E-07 |
sp|P9WKL4|Y560_MYCTO | Uncharacterized protein MT0586 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT0586 PE=3 SV=1 | 45 | 179 | 4.0E-07 |
sp|P9WKL5|Y560_MYCTU | Uncharacterized protein Rv0560c OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv0560c PE=1 SV=1 | 45 | 179 | 4.0E-07 |
sp|A5TZU0|Y567_MYCTA | Uncharacterized protein MRA_0567 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=MRA_0567 PE=1 SV=1 | 45 | 179 | 4.0E-07 |
sp|A9L3X6|TPMT_SHEB9 | Thiopurine S-methyltransferase OS=Shewanella baltica (strain OS195) GN=tpm PE=3 SV=1 | 31 | 207 | 4.0E-07 |
sp|Q4K8U2|TPMT_PSEF5 | Thiopurine S-methyltransferase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=tpm PE=3 SV=1 | 35 | 222 | 4.0E-07 |
sp|Q3BCQ8|TPMT_RABIT | Thiopurine S-methyltransferase OS=Oryctolagus cuniculus GN=TPMT PE=2 SV=1 | 39 | 193 | 4.0E-07 |
sp|Q9Z0T0|TPMT_RAT | Thiopurine S-methyltransferase OS=Rattus norvegicus GN=Tpmt PE=2 SV=1 | 35 | 193 | 5.0E-07 |
sp|Q504A5|TPMT_DANRE | Probable thiopurine S-methyltransferase OS=Danio rerio GN=tpmt PE=2 SV=1 | 29 | 193 | 5.0E-07 |
sp|A3QI29|TPMT_SHELP | Thiopurine S-methyltransferase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=tpm PE=3 SV=1 | 31 | 207 | 8.0E-07 |
sp|A4XVB5|TPMT_PSEMY | Thiopurine S-methyltransferase OS=Pseudomonas mendocina (strain ymp) GN=tpm PE=3 SV=1 | 67 | 193 | 2.0E-06 |
sp|A0Q3W9|TPMT_FRATN | Thiopurine S-methyltransferase OS=Francisella tularensis subsp. novicida (strain U112) GN=tpm PE=3 SV=1 | 35 | 235 | 2.0E-06 |
sp|Q7MK46|TPMT_VIBVY | Thiopurine S-methyltransferase OS=Vibrio vulnificus (strain YJ016) GN=tpm PE=3 SV=1 | 35 | 196 | 5.0E-06 |
sp|Q8DA33|TPMT_VIBVU | Thiopurine S-methyltransferase OS=Vibrio vulnificus (strain CMCP6) GN=tpm PE=3 SV=1 | 35 | 196 | 5.0E-06 |
sp|Q60AQ2|TPMT_METCA | Thiopurine S-methyltransferase OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=tpm PE=3 SV=1 | 31 | 193 | 5.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0008168 | methyltransferase activity | Yes |
GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | Yes |
GO:0003674 | molecular_function | No |
GO:0016741 | transferase activity, transferring one-carbon groups | No |
GO:0016740 | transferase activity | No |
GO:0003824 | catalytic activity | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 23 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
Casing | Casing mycelium | 36.36 | 18.66 | 54.07 |
Initials | Initials knots | 76.01 | 43.56 | 108.47 |
Pileal_Stipeal_center | Stage I stipe center | 70.15 | 39.65 | 100.66 |
Pileal_Stipeal_shell | Stage I stipe shell | 113.85 | 67.15 | 160.54 |
DIF_stipe_center | Stage II stipe center | 45.43 | 24.06 | 66.80 |
DIF_stipe_shell | Stage II stipe shell | 85.70 | 47.72 | 123.68 |
DIF_stipe_skin | Stage II stipe skin | 72.68 | 40.74 | 104.62 |
DIF_cap_skin | Stage II cap skin | 144.86 | 86.05 | 203.68 |
DIF_cap_tissue | Stage II cap tissue | 111.14 | 64.53 | 157.74 |
DIF_gill_tissue | Stage II gill tissue | 79.50 | 45.05 | 113.96 |
YFB_stipe_center | Young fruiting body stipe center | 55.71 | 30.88 | 80.53 |
YFB_stipe_shell | Young fruiting body stipe shell | 70.58 | 40.24 | 100.93 |
YFB_stipe_skin | Young fruiting body stipe skin | 46.85 | 25.43 | 68.26 |
YFB_cap_skin | Young fruiting body cap skin | 209.59 | 125.82 | 293.36 |
YFB_cap_tissue | Young fruiting body cap tissue | 134.80 | 79.81 | 189.80 |
YFB_gill_tissue | Young fruiting body gill tissue | 236.75 | 129.29 | 344.21 |
YFB_veil | Young fruiting body veil | 118.09 | 68.87 | 167.31 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
Casing | DIF_gill_tissue | 0.007439 | yes |
Casing | YFB_stipe_center | 0.219634 | no |
Casing | YFB_stipe_shell | 0.026955 | yes |
Casing | YFB_stipe_skin | 0.547977 | no |
Casing | YFB_cap_skin | 0.000613 | yes |
Casing | YFB_cap_tissue | 0.000613 | yes |
Casing | YFB_gill_tissue | 0.000613 | yes |
Casing | YFB_veil | 0.000613 | yes |
Casing | Initials | 0.011350 | yes |
Casing | Pileal_Stipeal_center | 0.031557 | yes |
Casing | Pileal_Stipeal_shell | 0.000613 | yes |
Casing | DIF_stipe_center | 0.622867 | no |
Casing | DIF_stipe_shell | 0.003765 | yes |
Casing | DIF_stipe_skin | 0.018896 | yes |
Casing | DIF_cap_skin | 0.000613 | yes |
Casing | DIF_cap_tissue | 0.000613 | yes |
DIF_gill_tissue | YFB_stipe_center | 0.297777 | no |
DIF_gill_tissue | YFB_stipe_shell | 0.802005 | no |
DIF_gill_tissue | YFB_stipe_skin | 0.087927 | no |
DIF_gill_tissue | YFB_cap_skin | 0.000613 | yes |
DIF_gill_tissue | YFB_cap_tissue | 0.065649 | no |
DIF_gill_tissue | YFB_gill_tissue | 0.000613 | yes |
DIF_gill_tissue | YFB_veil | 0.203756 | no |
YFB_stipe_center | YFB_stipe_shell | 0.542444 | no |
YFB_stipe_center | YFB_stipe_skin | 0.704331 | no |
YFB_stipe_center | YFB_cap_skin | 0.000613 | yes |
YFB_stipe_center | YFB_cap_tissue | 0.000613 | yes |
YFB_stipe_center | YFB_gill_tissue | 0.000613 | yes |
YFB_stipe_center | YFB_veil | 0.006032 | yes |
YFB_stipe_shell | YFB_stipe_skin | 0.211006 | no |
YFB_stipe_shell | YFB_cap_skin | 0.000613 | yes |
YFB_stipe_shell | YFB_cap_tissue | 0.014374 | yes |
YFB_stipe_shell | YFB_gill_tissue | 0.000613 | yes |
YFB_stipe_shell | YFB_veil | 0.071968 | no |
YFB_stipe_skin | YFB_cap_skin | 0.000613 | yes |
YFB_stipe_skin | YFB_cap_tissue | 0.000613 | yes |
YFB_stipe_skin | YFB_gill_tissue | 0.000613 | yes |
YFB_stipe_skin | YFB_veil | 0.000613 | yes |
YFB_cap_skin | YFB_cap_tissue | 0.111638 | no |
YFB_cap_skin | YFB_gill_tissue | 0.793288 | no |
YFB_cap_skin | YFB_veil | 0.033674 | yes |
YFB_cap_tissue | YFB_gill_tissue | 0.045487 | yes |
YFB_cap_tissue | YFB_veil | 0.763862 | no |
YFB_gill_tissue | YFB_veil | 0.012880 | yes |
Initials | DIF_gill_tissue | 0.937173 | no |
Initials | YFB_stipe_center | 0.381882 | no |
Initials | YFB_stipe_shell | 0.888941 | no |
Initials | YFB_stipe_skin | 0.120521 | no |
Initials | YFB_cap_skin | 0.000613 | yes |
Initials | YFB_cap_tissue | 0.038495 | yes |
Initials | YFB_gill_tissue | 0.000613 | yes |
Initials | YFB_veil | 0.142929 | no |
Initials | Pileal_Stipeal_center | 0.881180 | no |
Initials | Pileal_Stipeal_shell | 0.181451 | no |
Initials | DIF_stipe_center | 0.101215 | no |
Initials | DIF_stipe_shell | 0.809416 | no |
Initials | DIF_stipe_skin | 0.938024 | no |
Initials | DIF_cap_skin | 0.016386 | yes |
Initials | DIF_cap_tissue | 0.218974 | no |
Pileal_Stipeal_center | DIF_gill_tissue | 0.795320 | no |
Pileal_Stipeal_center | YFB_stipe_center | 0.572540 | no |
Pileal_Stipeal_center | YFB_stipe_shell | 0.991164 | no |
Pileal_Stipeal_center | YFB_stipe_skin | 0.230769 | no |
Pileal_Stipeal_center | YFB_cap_skin | 0.000613 | yes |
Pileal_Stipeal_center | YFB_cap_tissue | 0.018344 | yes |
Pileal_Stipeal_center | YFB_gill_tissue | 0.000613 | yes |
Pileal_Stipeal_center | YFB_veil | 0.081583 | no |
Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.100086 | no |
Pileal_Stipeal_center | DIF_stipe_center | 0.197235 | no |
Pileal_Stipeal_center | DIF_stipe_shell | 0.639885 | no |
Pileal_Stipeal_center | DIF_stipe_skin | 0.951299 | no |
Pileal_Stipeal_center | DIF_cap_skin | 0.007092 | yes |
Pileal_Stipeal_center | DIF_cap_tissue | 0.127636 | no |
Pileal_Stipeal_shell | DIF_gill_tissue | 0.260498 | no |
Pileal_Stipeal_shell | YFB_stipe_center | 0.009773 | yes |
Pileal_Stipeal_shell | YFB_stipe_shell | 0.095644 | no |
Pileal_Stipeal_shell | YFB_stipe_skin | 0.000613 | yes |
Pileal_Stipeal_shell | YFB_cap_skin | 0.017783 | yes |
Pileal_Stipeal_shell | YFB_cap_tissue | 0.674181 | no |
Pileal_Stipeal_shell | YFB_gill_tissue | 0.007439 | yes |
Pileal_Stipeal_shell | YFB_veil | 0.947829 | no |
Pileal_Stipeal_shell | DIF_stipe_center | 0.000613 | yes |
Pileal_Stipeal_shell | DIF_stipe_shell | 0.421378 | no |
Pileal_Stipeal_shell | DIF_stipe_skin | 0.122909 | no |
Pileal_Stipeal_shell | DIF_cap_skin | 0.491424 | no |
Pileal_Stipeal_shell | DIF_cap_tissue | 0.965689 | no |
DIF_stipe_center | DIF_gill_tissue | 0.067334 | no |
DIF_stipe_center | YFB_stipe_center | 0.648493 | no |
DIF_stipe_center | YFB_stipe_shell | 0.170490 | no |
DIF_stipe_center | YFB_stipe_skin | 0.962244 | no |
DIF_stipe_center | YFB_cap_skin | 0.000613 | yes |
DIF_stipe_center | YFB_cap_tissue | 0.000613 | yes |
DIF_stipe_center | YFB_gill_tissue | 0.000613 | yes |
DIF_stipe_center | YFB_veil | 0.000613 | yes |
DIF_stipe_center | DIF_stipe_shell | 0.035309 | yes |
DIF_stipe_center | DIF_stipe_skin | 0.134864 | no |
DIF_stipe_center | DIF_cap_skin | 0.000613 | yes |
DIF_stipe_center | DIF_cap_tissue | 0.002084 | yes |
DIF_stipe_shell | DIF_gill_tissue | 0.889150 | no |
DIF_stipe_shell | YFB_stipe_center | 0.191804 | no |
DIF_stipe_shell | YFB_stipe_shell | 0.644396 | no |
DIF_stipe_shell | YFB_stipe_skin | 0.046952 | yes |
DIF_stipe_shell | YFB_cap_skin | 0.000613 | yes |
DIF_stipe_shell | YFB_cap_tissue | 0.136312 | no |
DIF_stipe_shell | YFB_gill_tissue | 0.000613 | yes |
DIF_stipe_shell | YFB_veil | 0.352257 | no |
DIF_stipe_shell | DIF_stipe_skin | 0.714926 | no |
DIF_stipe_shell | DIF_cap_skin | 0.074661 | no |
DIF_stipe_shell | DIF_cap_tissue | 0.482560 | no |
DIF_stipe_skin | DIF_gill_tissue | 0.861481 | no |
DIF_stipe_skin | YFB_stipe_center | 0.484215 | no |
DIF_stipe_skin | YFB_stipe_shell | 0.958528 | no |
DIF_stipe_skin | YFB_stipe_skin | 0.176804 | no |
DIF_stipe_skin | YFB_cap_skin | 0.000613 | yes |
DIF_stipe_skin | YFB_cap_tissue | 0.024444 | yes |
DIF_stipe_skin | YFB_gill_tissue | 0.000613 | yes |
DIF_stipe_skin | YFB_veil | 0.100566 | no |
DIF_stipe_skin | DIF_cap_skin | 0.011659 | yes |
DIF_stipe_skin | DIF_cap_tissue | 0.160642 | no |
DIF_cap_skin | DIF_gill_tissue | 0.031088 | yes |
DIF_cap_skin | YFB_stipe_center | 0.000613 | yes |
DIF_cap_skin | YFB_stipe_shell | 0.005671 | yes |
DIF_cap_skin | YFB_stipe_skin | 0.000613 | yes |
DIF_cap_skin | YFB_cap_skin | 0.218427 | no |
DIF_cap_skin | YFB_cap_tissue | 0.883277 | no |
DIF_cap_skin | YFB_gill_tissue | 0.097447 | no |
DIF_cap_skin | YFB_veil | 0.592573 | no |
DIF_cap_skin | DIF_cap_tissue | 0.441291 | no |
DIF_cap_tissue | DIF_gill_tissue | 0.315328 | no |
DIF_cap_tissue | YFB_stipe_center | 0.014956 | yes |
DIF_cap_tissue | YFB_stipe_shell | 0.131844 | no |
DIF_cap_tissue | YFB_stipe_skin | 0.002084 | yes |
DIF_cap_tissue | YFB_cap_skin | 0.016386 | yes |
DIF_cap_tissue | YFB_cap_tissue | 0.617463 | no |
DIF_cap_tissue | YFB_gill_tissue | 0.005671 | yes |
DIF_cap_tissue | YFB_veil | 0.908196 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >AgabiH97|015390 MSGTGPISQPFNFRTDSEPAKAVRKLVDVYEPSTWNKAWQASVTPWDAGEFQPPLKEVIETNIDGIQWPNQTGKA LVPGCGTGYDAVYLASTLGVHAIGLDSSEIAVDKASASVNDRPLTKGKATFELADFFKYSSNEGFDLVYDYTFFV AIPPSRRNEWGAKMAELIKPGGYLITLIFPIDPKSDVGPPFYVRPEHYDEPLSSNFEKVIERIPETSRESHKGRE RVAVWRRKAE* |
Coding | >AgabiH97|015390 ATGAGTGGAACTGGTCCTATAAGTCAACCCTTCAACTTCAGAACCGACTCTGAGCCAGCAAAGGCGGTGCGAAAG CTCGTCGACGTATACGAACCGAGTACCTGGAACAAGGCATGGCAAGCGAGCGTAACACCTTGGGATGCGGGAGAA TTCCAACCGCCACTTAAAGAAGTCATCGAAACTAATATTGACGGGATACAATGGCCGAATCAAACAGGCAAAGCC CTTGTTCCAGGATGTGGTACCGGATATGATGCTGTCTATCTCGCGTCTACCCTTGGAGTCCATGCCATAGGCCTT GATTCGTCAGAGATTGCCGTTGATAAGGCTAGCGCTTCCGTGAACGATAGGCCCCTTACCAAGGGAAAAGCAACA TTCGAGCTAGCCGATTTTTTCAAATACTCATCCAATGAAGGTTTTGATCTTGTTTACGATTATACGTTTTTCGTT GCTATACCGCCTTCCCGTCGAAATGAGTGGGGAGCAAAGATGGCGGAACTAATCAAACCTGGAGGATACCTCATA ACGCTGATCTTCCCAATTGATCCCAAGTCTGATGTGGGACCACCCTTCTATGTCCGTCCAGAGCATTATGACGAG CCGCTTTCTTCCAACTTCGAGAAAGTCATTGAAAGAATTCCGGAAACCTCTCGGGAAAGTCACAAAGGACGTGAG AGAGTGGCAGTTTGGAGAAGGAAAGCCGAGTAA |
Transcript | >AgabiH97|015390 ATGAGTGGAACTGGTCCTATAAGTCAACCCTTCAACTTCAGAACCGACTCTGAGCCAGCAAAGGCGGTGCGAAAG CTCGTCGACGTATACGAACCGAGTACCTGGAACAAGGCATGGCAAGCGAGCGTAACACCTTGGGATGCGGGAGAA TTCCAACCGCCACTTAAAGAAGTCATCGAAACTAATATTGACGGGATACAATGGCCGAATCAAACAGGCAAAGCC CTTGTTCCAGGATGTGGTACCGGATATGATGCTGTCTATCTCGCGTCTACCCTTGGAGTCCATGCCATAGGCCTT GATTCGTCAGAGATTGCCGTTGATAAGGCTAGCGCTTCCGTGAACGATAGGCCCCTTACCAAGGGAAAAGCAACA TTCGAGCTAGCCGATTTTTTCAAATACTCATCCAATGAAGGTTTTGATCTTGTTTACGATTATACGTTTTTCGTT GCTATACCGCCTTCCCGTCGAAATGAGTGGGGAGCAAAGATGGCGGAACTAATCAAACCTGGAGGATACCTCATA ACGCTGATCTTCCCAATTGATCCCAAGTCTGATGTGGGACCACCCTTCTATGTCCGTCCAGAGCATTATGACGAG CCGCTTTCTTCCAACTTCGAGAAAGTCATTGAAAGAATTCCGGAAACCTCTCGGGAAAGTCACAAAGGACGTGAG AGAGTGGCAGTTTGGAGAAGGAAAGCCGAGTAA |
Gene | >AgabiH97|015390 ATGAGTGGAACTGGTCCTATAAGTCAACCCTTCAACTTCAGAACCGACTCTGAGCCAGCAAAGGCGGTGCGAAAG CTCGTCGACGTATACGAACCGAGTACCTGGAACAAGGCATGGCAAGTACTCCAACGTTCGAGTTCCATATCAGAT TAAACAATTCCAAAAGGGAGGCGAGCGTAACACCTTGGGATGCGGGAGAATTCCAACCGCCACTTAAAGAAGTCA TCGAAACTAATATTGACGGGATACAATGGCCGAATCAAACAGGCAAAGCCCTTGTTCCAGGATGTGGTACCGTAA GTCGCTTTAAACACTAGTCGGCGTTGCCGTGAATAACTTTTGCACAAGGGATATGATGCTGTCTATCTCGCGTCT ACCCTTGGAGTCCATGCCATAGGCCTTGATTCGTCAGAGATTGCCGTTGATAAGGCTAGCGCGTGCGTCTCGTTT CTGAACTTCTTCCCGCAAAAATCAATGATTCTGTTGTGGATAATCACAGTTCCGTGAACGATAGGCCCCTTACCA AGGGAAAAGCAACATTCGAGCTAGCCGATTTTTTCAAATACTCATCCAATGAAGGTTTTGATCTTGTTTACGATT ATACGTGAGGAATCTATTTCCACCATGAACTTGAAGTCAAAACAACTATTTTGCTAGGTTTTTCGTTGCTATACC GCCTTCCCGTCGAAATGAGTGGGGAGCAAAGATGGCGGAACTAATCAAACCTGGAGGATACCTCATAACGCTGAT CTTCCCAATTGATCCCAAGTCTGATGTGGGACCACCCTTCTATGTCCGTCCAGAGCATTATGACGAGCCGCTTTC TTCCAACTTCGAGAAAGTCATTGAAAGAATTCCGGAAACCTCTCGGGAAAGTCACAAAGGACGTGAGAGAGTGGC AGTTTGGAGAAGGAAAGCCGAGTAA |