© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|015360 |
| Gene name | |
| Location | scaffold_10:130677..131515 |
| Strand | + |
| Gene length (bp) | 838 |
| Transcript length (bp) | 663 |
| Coding sequence length (bp) | 663 |
| Protein length (aa) | 221 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.0755 | 0.0355 | 0.9583 | 0.0719 | 0.0492 | 0.0091 | 0.1751 | 0.0678 | 0.1183 | 0.002 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 21 | 0.999732 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 4 | 26 | 22 |
| 2 | 130 | 152 | 22 |
| 3 | 157 | 179 | 22 |
| 4 | 192 | 214 | 22 |
| Orthofinder run ID | 1 |
| Orthogroup | 5573 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|015360 MRSFAAIATIATAAFAAVASALPALPGATNGVTDAVIPKEAAVPAYSVHHEHSVVQIIVDLTAKVQPLCDELTAS ISGDVEVSAAVDISLDILGEIKGFIATAKADIQAAIDVNADLLVLNGETLAVKAVAEIVATLVIAVTTVLGLVVR VCASANVAVLVKLVADIGIELAGIISLVVRICADLVIVVKPLITVVANVIINLDLKALIQVLVLQGGSHY* |
| Coding | >AgabiH97|015360 ATGCGCTCTTTCGCCGCCATCGCCACCATCGCCACTGCTGCCTTCGCGGCTGTTGCTTCTGCTCTCCCCGCCCTT CCGGGTGCTACGAACGGAGTGACTGATGCAGTCATTCCTAAAGAGGCTGCAGTCCCAGCGTACTCTGTACATCAC GAGCACTCTGTCGTTCAGATCATTGTTGATCTAACTGCCAAGGTTCAGCCCCTCTGCGACGAGCTGACCGCATCC ATCTCTGGCGATGTTGAGGTTTCTGCCGCTGTTGATATTTCTCTTGATATCCTTGGAGAGATCAAAGGGTTCATT GCTACTGCTAAGGCCGATATTCAGGCCGCTATTGACGTGAATGCTGACCTCCTCGTTCTCAATGGAGAGACTCTC GCTGTCAAGGCTGTCGCTGAAATTGTTGCTACCCTCGTTATTGCTGTCACTACTGTCCTCGGTCTCGTCGTTAGA GTTTGCGCTTCGGCCAACGTTGCTGTCCTTGTCAAGCTTGTTGCTGACATTGGTATCGAACTTGCCGGTATCATC TCTCTCGTCGTTCGGATCTGCGCCGACTTGGTCATTGTCGTCAAGCCTCTCATCACCGTTGTTGCTAACGTCATC ATCAACCTCGATTTGAAGGCTCTTATCCAAGTCTTGGTTCTCCAGGGCGGTTCTCACTACTAG |
| Transcript | >AgabiH97|015360 ATGCGCTCTTTCGCCGCCATCGCCACCATCGCCACTGCTGCCTTCGCGGCTGTTGCTTCTGCTCTCCCCGCCCTT CCGGGTGCTACGAACGGAGTGACTGATGCAGTCATTCCTAAAGAGGCTGCAGTCCCAGCGTACTCTGTACATCAC GAGCACTCTGTCGTTCAGATCATTGTTGATCTAACTGCCAAGGTTCAGCCCCTCTGCGACGAGCTGACCGCATCC ATCTCTGGCGATGTTGAGGTTTCTGCCGCTGTTGATATTTCTCTTGATATCCTTGGAGAGATCAAAGGGTTCATT GCTACTGCTAAGGCCGATATTCAGGCCGCTATTGACGTGAATGCTGACCTCCTCGTTCTCAATGGAGAGACTCTC GCTGTCAAGGCTGTCGCTGAAATTGTTGCTACCCTCGTTATTGCTGTCACTACTGTCCTCGGTCTCGTCGTTAGA GTTTGCGCTTCGGCCAACGTTGCTGTCCTTGTCAAGCTTGTTGCTGACATTGGTATCGAACTTGCCGGTATCATC TCTCTCGTCGTTCGGATCTGCGCCGACTTGGTCATTGTCGTCAAGCCTCTCATCACCGTTGTTGCTAACGTCATC ATCAACCTCGATTTGAAGGCTCTTATCCAAGTCTTGGTTCTCCAGGGCGGTTCTCACTACTAG |
| Gene | >AgabiH97|015360 ATGCGCTCTTTCGCCGCCATCGCCACCATCGCCACTGCTGCCTTCGCGGCTGTTGCTTCTGCTCTCCCCGCCCTT CCGGGTGCTACGAACGGAGTGACTGATGCAGTCATTCCTAAAGTAAGACCATTTTAATATCTTTGGATGTTCGTC GTACTGACTTTGCATCATAGGAGGCTGCAGTCCCAGCGTACTCTGTACATCACGAGCACTCTGTCGTTCAGATCA TTGTTGATCTAACTGCCAAGGTTCAGCCCCTCTGCGACGAGCTGAGTAAGTTTTGTACTAGTCATGATCATGATC GGCGTTCACAGCTGATTTTGTTCCGCCTATCTTTGCAGCCGCATCCATCTCTGGCGATGTTGAGGTTTCTGCCGC TGTTGATATTTCTCTTGATATCCTTGGAGAGATCAAAGGGTTCATTGCTACTGCTAAGGCCGATATTCAGGCCGC TATTGACGTGAATGCTGACCTCCTCGTTCTCAATGGAGAGACTCTCGCTGTCAAGGCTGTCGCTGAAATTGTTGC TACCCTCGTTATTGTACGTTTTCCTTTCCTACGCTCATTTTGGGTTTGTCTCATCCACTTTCTATAGGCTGTCAC TACTGTCCTCGGTCTCGTCGTTAGAGTTTGCGCTTCGGCCAACGTTGCTGTCCTTGTCAAGCTTGTTGCTGACAT TGGTATCGAACTTGCCGGTATCATCTCTCTCGTCGTTCGGATCTGCGCCGACTTGGTCATTGTCGTCAAGCCTCT CATCACCGTTGTTGCTAACGTCATCATCAACCTCGATTTGAAGGCTCTTATCCAAGTCTTGGTTCTCCAGGGCGG TTCTCACTACTAG |