Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	AgabiH97|014580
Gene name
Location	scaffold_1:3480003..3481342
Strand	-
Gene length (bp)	1339
Transcript length (bp)	741
Coding sequence length (bp)	741
Protein length (aa)	247

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01328	Peroxidase_2	Peroxidase, family 2	7.4E-23	153	214

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp|B9W4V6|APO1_AGRAE	Aromatic peroxygenase OS=Agrocybe aegerita GN=APO1 PE=1 SV=1	100	241	2.0E-41
sp|B9W4V8|APO1_COPRA	Aromatic peroxygenase (Fragments) OS=Coprinellus radians GN=APO PE=1 SV=2	135	242	7.0E-30

GO

GO Term	Description	Terminal node
GO:0004601	peroxidase activity	Yes
GO:0003674	molecular_function	No
GO:0016491	oxidoreductase activity	No
GO:0016209	antioxidant activity	No
GO:0003824	catalytic activity	No
GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 21	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Casing	Casing mycelium	19.62	9.43	29.80
Initials	Initials knots	25.14	12.53	37.75
Pileal_Stipeal_center	Stage I stipe center	28.99	12.96	45.01
Pileal_Stipeal_shell	Stage I stipe shell	2.88	0.81	4.95
DIF_stipe_center	Stage II stipe center	2.16	0.56	3.76
DIF_stipe_shell	Stage II stipe shell	2.06	0.54	3.58
DIF_stipe_skin	Stage II stipe skin	27.80	12.55	43.06
DIF_cap_skin	Stage II cap skin	1.38	0.24	2.51
DIF_cap_tissue	Stage II cap tissue	1.95	0.50	3.41
DIF_gill_tissue	Stage II gill tissue	1.71	0.40	3.02
YFB_stipe_center	Young fruiting body stipe center	9.46	3.10	15.82
YFB_stipe_shell	Young fruiting body stipe shell	3.59	1.04	6.13
YFB_stipe_skin	Young fruiting body stipe skin	8.89	2.97	14.81
YFB_cap_skin	Young fruiting body cap skin	1.84	0.38	3.29
YFB_cap_tissue	Young fruiting body cap tissue	1.63	0.36	2.89
YFB_gill_tissue	Young fruiting body gill tissue	2.69	0.81	4.58
YFB_veil	Young fruiting body veil	1.85	0.40	3.30

Differential expression

Label1	Label2	Q-value	Significant difference
Casing	DIF_gill_tissue	0.000613	yes
Casing	YFB_stipe_center	0.084360	no
Casing	YFB_stipe_shell	0.000613	yes
Casing	YFB_stipe_skin	0.060299	no
Casing	YFB_cap_skin	0.000613	yes
Casing	YFB_cap_tissue	0.000613	yes
Casing	YFB_gill_tissue	0.000613	yes
Casing	YFB_veil	0.000613	yes
Casing	Initials	0.606067	no
Casing	Pileal_Stipeal_center	0.378147	no
Casing	Pileal_Stipeal_shell	0.000613	yes
Casing	DIF_stipe_center	0.000613	yes
Casing	DIF_stipe_shell	0.000613	yes
Casing	DIF_stipe_skin	0.440936	no
Casing	DIF_cap_skin	0.000613	yes
Casing	DIF_cap_tissue	0.000613	yes
DIF_gill_tissue	YFB_stipe_center	0.000613	yes
DIF_gill_tissue	YFB_stipe_shell	0.175153	no
DIF_gill_tissue	YFB_stipe_skin	0.000613	yes
DIF_gill_tissue	YFB_cap_skin	0.944996	no
DIF_gill_tissue	YFB_cap_tissue	0.960889	no
DIF_gill_tissue	YFB_gill_tissue	0.458308	no
DIF_gill_tissue	YFB_veil	0.938213	no
YFB_stipe_center	YFB_stipe_shell	0.042475	yes
YFB_stipe_center	YFB_stipe_skin	0.944518	no
YFB_stipe_center	YFB_cap_skin	0.001625	yes
YFB_stipe_center	YFB_cap_tissue	0.000613	yes
YFB_stipe_center	YFB_gill_tissue	0.005302	yes
YFB_stipe_center	YFB_veil	0.001140	yes
YFB_stipe_shell	YFB_stipe_skin	0.057747	no
YFB_stipe_shell	YFB_cap_skin	0.254748	no
YFB_stipe_shell	YFB_cap_tissue	0.143342	no
YFB_stipe_shell	YFB_gill_tissue	0.680979	no
YFB_stipe_shell	YFB_veil	0.254541	no
YFB_stipe_skin	YFB_cap_skin	0.002525	yes
YFB_stipe_skin	YFB_cap_tissue	0.000613	yes
YFB_stipe_skin	YFB_gill_tissue	0.006387	yes
YFB_stipe_skin	YFB_veil	0.002525	yes
YFB_cap_skin	YFB_cap_tissue	0.901305	no
YFB_cap_skin	YFB_gill_tissue	0.573368	no
YFB_cap_skin	YFB_veil	0.992693	no
YFB_cap_tissue	YFB_gill_tissue	0.393588	no
YFB_cap_tissue	YFB_veil	0.894796	no
YFB_gill_tissue	YFB_veil	0.583503	no
Initials	DIF_gill_tissue	0.000613	yes
Initials	YFB_stipe_center	0.016104	yes
Initials	YFB_stipe_shell	0.000613	yes
Initials	YFB_stipe_skin	0.010412	yes
Initials	YFB_cap_skin	0.000613	yes
Initials	YFB_cap_tissue	0.000613	yes
Initials	YFB_gill_tissue	0.000613	yes
Initials	YFB_veil	0.000613	yes
Initials	Pileal_Stipeal_center	0.815508	no
Initials	Pileal_Stipeal_shell	0.000613	yes
Initials	DIF_stipe_center	0.000613	yes
Initials	DIF_stipe_shell	0.000613	yes
Initials	DIF_stipe_skin	0.878078	no
Initials	DIF_cap_skin	0.000613	yes
Initials	DIF_cap_tissue	0.000613	yes
Pileal_Stipeal_center	DIF_gill_tissue	0.000613	yes
Pileal_Stipeal_center	YFB_stipe_center	0.005671	yes
Pileal_Stipeal_center	YFB_stipe_shell	0.000613	yes
Pileal_Stipeal_center	YFB_stipe_skin	0.005302	yes
Pileal_Stipeal_center	YFB_cap_skin	0.000613	yes
Pileal_Stipeal_center	YFB_cap_tissue	0.000613	yes
Pileal_Stipeal_center	YFB_gill_tissue	0.000613	yes
Pileal_Stipeal_center	YFB_veil	0.000613	yes
Pileal_Stipeal_center	Pileal_Stipeal_shell	0.000613	yes
Pileal_Stipeal_center	DIF_stipe_center	0.000613	yes
Pileal_Stipeal_center	DIF_stipe_shell	0.000613	yes
Pileal_Stipeal_center	DIF_stipe_skin	0.955881	no
Pileal_Stipeal_center	DIF_cap_skin	0.000613	yes
Pileal_Stipeal_center	DIF_cap_tissue	0.000613	yes
Pileal_Stipeal_shell	DIF_gill_tissue	0.394341	no
Pileal_Stipeal_shell	YFB_stipe_center	0.010728	yes
Pileal_Stipeal_shell	YFB_stipe_shell	0.785110	no
Pileal_Stipeal_shell	YFB_stipe_skin	0.015242	yes
Pileal_Stipeal_shell	YFB_cap_skin	0.506875	no
Pileal_Stipeal_shell	YFB_cap_tissue	0.343364	no
Pileal_Stipeal_shell	YFB_gill_tissue	0.943766	no
Pileal_Stipeal_shell	YFB_veil	0.511775	no
Pileal_Stipeal_shell	DIF_stipe_center	0.705361	no
Pileal_Stipeal_shell	DIF_stipe_shell	0.638725	no
Pileal_Stipeal_shell	DIF_stipe_skin	0.000613	yes
Pileal_Stipeal_shell	DIF_cap_skin	0.222255	no
Pileal_Stipeal_shell	DIF_cap_tissue	0.561775	no
DIF_stipe_center	DIF_gill_tissue	0.773111	no
DIF_stipe_center	YFB_stipe_center	0.002525	yes
DIF_stipe_center	YFB_stipe_shell	0.406687	no
DIF_stipe_center	YFB_stipe_skin	0.003365	yes
DIF_stipe_center	YFB_cap_skin	0.862497	no
DIF_stipe_center	YFB_cap_tissue	0.715000	no
DIF_stipe_center	YFB_gill_tissue	0.778073	no
DIF_stipe_center	YFB_veil	0.869842	no
DIF_stipe_center	DIF_stipe_shell	0.963430	no
DIF_stipe_center	DIF_stipe_skin	0.000613	yes
DIF_stipe_center	DIF_cap_skin	0.524212	no
DIF_stipe_center	DIF_cap_tissue	0.919278	no
DIF_stipe_shell	DIF_gill_tissue	0.825935	no
DIF_stipe_shell	YFB_stipe_center	0.000613	yes
DIF_stipe_shell	YFB_stipe_shell	0.348798	no
DIF_stipe_shell	YFB_stipe_skin	0.000613	yes
DIF_stipe_shell	YFB_cap_skin	0.908196	no
DIF_stipe_shell	YFB_cap_tissue	0.773898	no
DIF_stipe_shell	YFB_gill_tissue	0.711051	no
DIF_stipe_shell	YFB_veil	0.913456	no
DIF_stipe_shell	DIF_stipe_skin	0.000613	yes
DIF_stipe_shell	DIF_cap_skin	0.585544	no
DIF_stipe_shell	DIF_cap_tissue	0.959177	no
DIF_stipe_skin	DIF_gill_tissue	0.000613	yes
DIF_stipe_skin	YFB_stipe_center	0.006742	yes
DIF_stipe_skin	YFB_stipe_shell	0.000613	yes
DIF_stipe_skin	YFB_stipe_skin	0.005302	yes
DIF_stipe_skin	YFB_cap_skin	0.000613	yes
DIF_stipe_skin	YFB_cap_tissue	0.000613	yes
DIF_stipe_skin	YFB_gill_tissue	0.000613	yes
DIF_stipe_skin	YFB_veil	0.000613	yes
DIF_stipe_skin	DIF_cap_skin	0.000613	yes
DIF_stipe_skin	DIF_cap_tissue	0.000613	yes
DIF_cap_skin	DIF_gill_tissue	0.812925	no
DIF_cap_skin	YFB_stipe_center	0.001625	yes
DIF_cap_skin	YFB_stipe_shell	0.091161	no
DIF_cap_skin	YFB_stipe_skin	0.002084	yes
DIF_cap_skin	YFB_cap_skin	0.734338	no
DIF_cap_skin	YFB_cap_tissue	0.865077	no
DIF_cap_skin	YFB_gill_tissue	0.256858	no
DIF_cap_skin	YFB_veil	0.729803	no
DIF_cap_skin	DIF_cap_tissue	0.649307	no
DIF_cap_tissue	DIF_gill_tissue	0.883295	no
DIF_cap_tissue	YFB_stipe_center	0.000613	yes
DIF_cap_tissue	YFB_stipe_shell	0.283459	no
DIF_cap_tissue	YFB_stipe_skin	0.000613	yes
DIF_cap_tissue	YFB_cap_skin	0.954946	no
DIF_cap_tissue	YFB_cap_tissue	0.832182	no
DIF_cap_tissue	YFB_gill_tissue	0.638083	no
DIF_cap_tissue	YFB_veil	0.958045	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|014580 MLFRLYHYPLLGSIDPYCSSESKMAVDNSKPTRARLRLIRKYMPCQSITEVIKWPRGCYHLTLQKPSAGYVRCWP IRIHELCFRKPLQSPIAIKACQARAAPVTAFPAHVSLAGLSREELDMAMSGFGPYSTPPPPPGPLEFGGTKLVND AEHPFMDPKDTDIRGPCPALNTLANHGYINRNGIDTPSNIVRAAMEGFNMHNNLAKFTCYSAFVVNGNMVTDLLS IGEKSAKTGPDPPQPAIYDSS*
Coding	>AgabiH97|014580 ATGCTGTTCCGATTATATCATTATCCACTCCTTGGCAGTATAGATCCGTATTGCTCGTCTGAATCAAAGATGGCT GTCGACAATTCCAAACCTACGAGAGCCCGGTTGCGACTTATACGAAAGTACATGCCATGCCAATCAATCACCGAA GTGATTAAGTGGCCCAGAGGATGTTACCACCTCACCCTGCAGAAACCGAGTGCGGGGTACGTACGATGTTGGCCC ATTAGGATACACGAACTTTGTTTCCGCAAACCACTCCAAAGCCCAATAGCTATAAAAGCATGCCAGGCAAGAGCT GCTCCCGTTACCGCATTCCCAGCTCATGTTTCTTTGGCTGGTTTGTCGAGGGAGGAGTTGGACATGGCCATGAGT GGCTTTGGCCCGTATTCAACTCCGCCGCCTCCCCCTGGCCCACTCGAATTTGGTGGTACTAAACTCGTCAACGAC GCCGAGCATCCTTTCATGGACCCAAAGGATACTGACATCCGTGGACCATGCCCCGCTTTGAATACACTCGCCAAC CATGGTTACATCAACCGTAATGGTATTGACACTCCGTCAAACATCGTCCGTGCCGCCATGGAAGGCTTCAACATG CACAACAACTTGGCCAAGTTCACCTGCTATTCCGCCTTCGTTGTGAATGGCAACATGGTCACCGACTTGCTCAGC ATCGGCGAGAAGTCTGCGAAGACCGGTCCCGACCCACCTCAACCAGCTATTTATGACTCGAGCTGA
Transcript	>AgabiH97|014580 ATGCTGTTCCGATTATATCATTATCCACTCCTTGGCAGTATAGATCCGTATTGCTCGTCTGAATCAAAGATGGCT GTCGACAATTCCAAACCTACGAGAGCCCGGTTGCGACTTATACGAAAGTACATGCCATGCCAATCAATCACCGAA GTGATTAAGTGGCCCAGAGGATGTTACCACCTCACCCTGCAGAAACCGAGTGCGGGGTACGTACGATGTTGGCCC ATTAGGATACACGAACTTTGTTTCCGCAAACCACTCCAAAGCCCAATAGCTATAAAAGCATGCCAGGCAAGAGCT GCTCCCGTTACCGCATTCCCAGCTCATGTTTCTTTGGCTGGTTTGTCGAGGGAGGAGTTGGACATGGCCATGAGT GGCTTTGGCCCGTATTCAACTCCGCCGCCTCCCCCTGGCCCACTCGAATTTGGTGGTACTAAACTCGTCAACGAC GCCGAGCATCCTTTCATGGACCCAAAGGATACTGACATCCGTGGACCATGCCCCGCTTTGAATACACTCGCCAAC CATGGTTACATCAACCGTAATGGTATTGACACTCCGTCAAACATCGTCCGTGCCGCCATGGAAGGCTTCAACATG CACAACAACTTGGCCAAGTTCACCTGCTATTCCGCCTTCGTTGTGAATGGCAACATGGTCACCGACTTGCTCAGC ATCGGCGAGAAGTCTGCGAAGACCGGTCCCGACCCACCTCAACCAGCTATTTATGACTCGAGCTGA
Gene	>AgabiH97|014580 ATGCTGTTCCGATTATATCAGTAAGTCCATATGTTTGTTGATAACAGCGCTTCCGCTGAGTTATCGAAAGTTATC CACTCCTTGGCAGTATAGATCCGTATTGCTCGTCTGAATCAAAGATGGCTGTCGTACGTGATATACAAGTCCCAG GTAAAGCCACATTCTGACGATGAGTATATTCTTGGCACTGCAGGACAATTCCAGTGAGTTCGAATGCATGAAAAT ATCTCGGTGCCGAATGCACCAACCTGCTCGCTCGCGCACGGAACAGCAGCATATAGACGATATATCTCATAAAAA ATGCAGACAGAACCTACGAGTCAGTACGCTGATAATGTCCAATGGAAGTCAACTTGAATGGTCTACGGTAGGAGC CCGGTTGCGACTTATACGAAAGTACATGCCATGCCAATCAATCACCGAAGTGATTAAGTGGCCCAGAGGATGTTA CCACCTCACCCTGCAGAAACCGAGTGCGGGGTACGGTATGTGGCGCTGTACTTGATGTCTCATCTCATTCTCCCC GGGCAGTACGATGTTGGCCCATTAGGATACACGAACTTTGTTTCCGCAAACCACTCCAAAGCCCAATAGCTATAA AAGCATGCCAGGCAAGAGGTAAGAAACATCAGTCTGCTGTTCAGTCATGGTTGGCTTCATCTCCTTCGTCACTCT TGCTATTGCTTTAGCTGCTCCCGTTACCGCATTCCCAGCTCATGTTTCTTTGGCTGGTTTGTCGAGGGAGGAGTT GGACATGGCCATGAGTGGCTTTGGCCCGTATTCAACTCCGCCGCCTCCCCCTGGCCCACTCGAATTTGGTGGTAC TAAACTCGTCAACGACGCCGAGCATCCTTTCATGGACCCAAAGGATACTGACATCCGTGGACCATGCCCCGCTTT GAATACACTCGCCAACCATGGTGTATGTATTTTTCGAGCCAATCTGAGTCAAAAATCTAATTTGACCGTCATTCA CAGTACATCAACCGTAATGGTATTGACACTCCGTCAAACATCGTCCGTGCCGCCATGGAAGGTCTGTCTTTTTCG GCCTTTTCTTTCTTATTTAATAGCTGAGTTTGTGCAGGCTTCAACATGCACAACAACTTGGCCAAGTTCACCTGC TATTCCGCCTTCGTTGTGAATGGCAACATGGTCACCGACTTGCTCAGCATCGGCGAGAAGTCTGCGAAGACCGGT CCCGACCCACCTCAACCAGCTATTGTAGGTGGGTTGAACACCCACAATGTTTTCGAAGGTGATAGCAGTATGACT CGAGGTCAGTTTCATTTATGGCGACAACCGTCTAGAGCAACACACTCACTCTGTCTCCAGCTGA