Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|014310
Gene name
Locationscaffold_1:3400324..3400994
Strand-
Gene length (bp)670
Transcript length (bp)501
Coding sequence length (bp)501
Protein length (aa) 167

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.1257 0.0791 0.918 0.096 0.0634 0.009 0.2315 0.2452 0.1114 0.0043

SignalP

SignalP signal predicted Location Score
Yes 1 - 19 0.998748

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup8404
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|014300
Agaricus bisporus var bisporus H39 AgabiH39|014310
Agaricus bisporus var bisporus H97 AgabiH97|014300
Agaricus bisporus var bisporus H97 AgabiH97|014310 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|014310
MKVPHSILLLSLFTLRALSATITLYRIAEPTPTTATDLDPSMRFEGLSYTISPAGVGEDGRTTYIEVDRVSTEIV
ATLPTTTVTLSAPPPRTITITFEEDASGLLWQYSTRATLTSESTIVDRWDTQSCNFQGTTAGTCVGIAHFPSLEG
NFTFTNSDGKLEGSGS*
Coding >AgabiH97|014310
ATGAAGGTCCCTCATAGTATTTTGTTATTGTCATTATTCACCCTCAGAGCCTTATCCGCCACTATCACACTTTAC
CGAATAGCGGAGCCGACGCCTACTACTGCTACAGATTTGGATCCCAGCATGAGATTCGAGGGACTTTCATATACG
ATCTCACCAGCTGGAGTCGGAGAGGACGGAAGGACAACATACATTGAAGTAGACAGGGTTTCGACCGAGATTGTT
GCTACACTCCCTACGACAACAGTGACACTTTCCGCTCCTCCGCCAAGGACAATAACGATCACCTTCGAGGAGGAC
GCTTCGGGCTTATTATGGCAGTATTCGACTAGAGCCACGCTGACCTCTGAATCTACCATCGTTGATCGCTGGGAT
ACACAATCATGCAATTTTCAAGGAACTACAGCTGGCACCTGTGTGGGGATTGCACACTTTCCATCTCTTGAAGGC
AATTTTACTTTCACAAATTCCGACGGAAAACTCGAGGGCTCTGGCTCTTAG
Transcript >AgabiH97|014310
ATGAAGGTCCCTCATAGTATTTTGTTATTGTCATTATTCACCCTCAGAGCCTTATCCGCCACTATCACACTTTAC
CGAATAGCGGAGCCGACGCCTACTACTGCTACAGATTTGGATCCCAGCATGAGATTCGAGGGACTTTCATATACG
ATCTCACCAGCTGGAGTCGGAGAGGACGGAAGGACAACATACATTGAAGTAGACAGGGTTTCGACCGAGATTGTT
GCTACACTCCCTACGACAACAGTGACACTTTCCGCTCCTCCGCCAAGGACAATAACGATCACCTTCGAGGAGGAC
GCTTCGGGCTTATTATGGCAGTATTCGACTAGAGCCACGCTGACCTCTGAATCTACCATCGTTGATCGCTGGGAT
ACACAATCATGCAATTTTCAAGGAACTACAGCTGGCACCTGTGTGGGGATTGCACACTTTCCATCTCTTGAAGGC
AATTTTACTTTCACAAATTCCGACGGAAAACTCGAGGGCTCTGGCTCTTAG
Gene >AgabiH97|014310
ATGAAGGTCCCTCATAGTATTTTGTTATTGTCATTATTCACCCTCAGTAAGCTTTTCTTGCAGAGTTAGTAATGG
ACTTTTCCTCACTGCTTAAAAGGAGCCTTATCCGCCACTATCACACTTTACCGAATAGCGGAGCCGACGCCTACT
ACTGCTACAGATTTGGATCCCAGCATGAGATTCGAGGGACTTTCATATACGATCTCACCAGCTGGAGTCGGAGAG
GACGGAAGGACAACATACATTGAAGTAGACAGGGTTTCGACCGAGATTGTTGCTACACTCCCTACGACAACAGTG
ACACTTTCCGCTCCTCCGCCAAGGACAATAACGAGTGAGCCCTTACTATGCTGTGTCTTTGATGTGCGGATAACT
TGATGCACTCATTATTGGTTAAAGTCACCTTCGAGGAGGACGCTTCGGGCTTATTATGGCAGTATTCGACTAGAG
CCACGCTGACCTCTGAATCTACCATCGTTGATCGCTGGGATACACAATCATGCAATTTTCAAGGAACTACAGCTG
GCACCTGTGTGGGGATTGCACACTTTCCATCTCTTGAAGGCAATTTTACTTTCACAAATTCCGGTACATTGATAC
CCATTTACACTCTGACTGAAACTTCAAGCATTCCTGTCCAGACGGAAAACTCGAGGGCTCTGGCTCTTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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