Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|014010
Gene name
Location	scaffold_1:3333313..3334293
Strand	-
Gene length (bp)	980
Transcript length (bp)	873
Coding sequence length (bp)	873
Protein length (aa)	291

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF12697	Abhydrolase_6	Alpha/beta hydrolase family	8.4E-12	36	279
PF12146	Hydrolase_4	Serine aminopeptidase, S33	2.1E-07	35	145
PF00561	Abhydrolase_1	alpha/beta hydrolase fold	8.4E-08	34	137

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P9WGS3\|EPHD_MYCTU	Probable oxidoreductase EphD OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=ephD PE=1 SV=1	10	104	1.0E-06
sp\|P9WGS2\|EPHD_MYCTO	Probable oxidoreductase EphD OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=ephD PE=3 SV=1	10	104	1.0E-06
sp\|P66778\|EPHD_MYCBO	Probable oxidoreductase EphD OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=ephD PE=3 SV=1	10	104	1.0E-06
sp\|P22862\|ESTE_PSEFL	Arylesterase OS=Pseudomonas fluorescens PE=1 SV=4	10	286	6.0E-06

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 49	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|014010 MTKDLEVNTSRFVKSADGTEIYADAAGNRSPSTPVLVLVHGGFLCKDAFNPIFDDPKWTSNLFLVRYDARGHGRS GKPATEEAWESKRFSEDFEAVCREFEVKEAYVLGWSVGAAVLADITAYTTPVKMLGFINVAGLIYVNPSVNSRVG SRQSREWGPPFLFPPSEDALQESCAYFLRICSEELSPELFRILLEGMLMQSRGIAKRVCSRKQNPEKMLQEARDG RIPLLAISGLKDQALITEKLKGELEDLGWKRMTYRYLQDADHMPWVSCAEEFREIVLAWIKELTP*
Coding	>AgabiH97\|014010 ATGACCAAAGACTTGGAAGTAAATACCTCTCGCTTCGTAAAATCAGCCGATGGCACGGAAATCTATGCTGACGCG GCAGGAAATCGCTCGCCAAGCACCCCAGTCCTCGTTTTGGTCCATGGTGGTTTCTTGTGCAAAGACGCATTCAAT CCTATCTTCGACGATCCTAAATGGACCTCTAATCTATTCTTAGTGCGGTACGATGCCCGTGGACACGGTAGAAGC GGCAAACCGGCCACTGAGGAAGCCTGGGAATCCAAACGGTTTTCGGAAGATTTTGAAGCTGTTTGTAGAGAATTC GAAGTGAAAGAAGCATATGTCTTGGGATGGAGTGTCGGCGCCGCAGTGCTCGCTGATATCACGGCCTACACCACT CCAGTTAAAATGCTTGGCTTCATTAATGTCGCAGGACTTATATACGTGAATCCCTCGGTCAATTCACGCGTAGGT AGTCGACAGTCACGTGAATGGGGACCCCCATTCTTGTTCCCTCCTTCCGAAGATGCCCTCCAAGAATCTTGTGCT TATTTCCTTCGAATATGCTCCGAAGAACTCTCCCCAGAGCTCTTTCGCATTTTATTGGAAGGAATGCTCATGCAG TCGCGCGGAATAGCGAAGCGGGTTTGTTCAAGAAAACAGAATCCTGAGAAGATGTTGCAGGAGGCGCGAGACGGG AGAATTCCACTCCTGGCCATCAGCGGCTTAAAAGACCAAGCATTGATTACTGAGAAGTTGAAAGGAGAGTTGGAA GACTTGGGATGGAAAAGGATGACCTATCGGTATTTACAAGACGCGGACCACATGCCTTGGGTGTCTTGTGCAGAA GAGTTTAGAGAAATTGTGTTGGCGTGGATAAAGGAGTTAACACCATAA
Transcript	>AgabiH97\|014010 ATGACCAAAGACTTGGAAGTAAATACCTCTCGCTTCGTAAAATCAGCCGATGGCACGGAAATCTATGCTGACGCG GCAGGAAATCGCTCGCCAAGCACCCCAGTCCTCGTTTTGGTCCATGGTGGTTTCTTGTGCAAAGACGCATTCAAT CCTATCTTCGACGATCCTAAATGGACCTCTAATCTATTCTTAGTGCGGTACGATGCCCGTGGACACGGTAGAAGC GGCAAACCGGCCACTGAGGAAGCCTGGGAATCCAAACGGTTTTCGGAAGATTTTGAAGCTGTTTGTAGAGAATTC GAAGTGAAAGAAGCATATGTCTTGGGATGGAGTGTCGGCGCCGCAGTGCTCGCTGATATCACGGCCTACACCACT CCAGTTAAAATGCTTGGCTTCATTAATGTCGCAGGACTTATATACGTGAATCCCTCGGTCAATTCACGCGTAGGT AGTCGACAGTCACGTGAATGGGGACCCCCATTCTTGTTCCCTCCTTCCGAAGATGCCCTCCAAGAATCTTGTGCT TATTTCCTTCGAATATGCTCCGAAGAACTCTCCCCAGAGCTCTTTCGCATTTTATTGGAAGGAATGCTCATGCAG TCGCGCGGAATAGCGAAGCGGGTTTGTTCAAGAAAACAGAATCCTGAGAAGATGTTGCAGGAGGCGCGAGACGGG AGAATTCCACTCCTGGCCATCAGCGGCTTAAAAGACCAAGCATTGATTACTGAGAAGTTGAAAGGAGAGTTGGAA GACTTGGGATGGAAAAGGATGACCTATCGGTATTTACAAGACGCGGACCACATGCCTTGGGTGTCTTGTGCAGAA GAGTTTAGAGAAATTGTGTTGGCGTGGATAAAGGAGTTAACACCATAA
Gene	>AgabiH97\|014010 ATGACCAAAGACTTGGAAGTAAATACCTCTCGCTTCGTAAAATCAGCCGATGGCACGGAAATCTATGCTGACGCG GCAGGAAATCGCTCGCCAAGCACCCCAGTCCTCGTTTTGGTCCATGGTGGTTTCTTGTGCAAAGACGCATTCAAT CCTATCTTCGACGATCCTAAATGGACCTCTAATCTATTCTTAGTAAGCCAAGTTGGCAGCTTTGTGAACTTGACC GAAACTCATGATAGTGACAGGTGCGGTACGATGCCCGTGGACACGGTAGAAGCGGCAAACCGGCCACTGAGGAAG CCTGGGAATCCAAACGGTTTTCGGAAGATTTTGAAGCTGTTTGTAGAGAATTCGAAGTGAAAGAAGCATATGTCT TGGGATGGAGTGTCGGCGGTGCGCCATTTTCTTTACTCGATACCACTAGACGCGGCTCTGATGACTTTTCAGCCG CAGTGCTCGCTGATATCACGGCCTACACCACTCCAGTTAAAATGCTTGGCTTCATTAATGTCGCAGGACTTATAT ACGTGAATCCCTCGGTCAATTCACGCGTAGGTAGTCGACAGTCACGTGAATGGGGACCCCCATTCTTGTTCCCTC CTTCCGAAGATGCCCTCCAAGAATCTTGTGCTTATTTCCTTCGAATATGCTCCGAAGAACTCTCCCCAGAGCTCT TTCGCATTTTATTGGAAGGAATGCTCATGCAGTCGCGCGGAATAGCGAAGCGGGTTTGTTCAAGAAAACAGAATC CTGAGAAGATGTTGCAGGAGGCGCGAGACGGGAGAATTCCACTCCTGGCCATCAGCGGCTTAAAAGACCAAGCAT TGATTACTGAGAAGTTGAAAGGAGAGTTGGAAGACTTGGGATGGAAAAGGATGACCTATCGGTATTTACAAGACG CGGACCACATGCCTTGGGTGTCTTGTGCAGAAGAGTTTAGAGAAATTGTGTTGGCGTGGATAAAGGAGTTAACAC CATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail