Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|013700
Gene name
Location	scaffold_1:3255902..3257180
Strand	-
Gene length (bp)	1278
Transcript length (bp)	1218
Coding sequence length (bp)	1218
Protein length (aa)	406

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01755	Glyco_transf_25	Glycosyltransferase family 25 (LPS biosynthesis protein)	4.4E-12	73	338

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 43	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	20	37	17

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|013700 MVLTLFPRLKLTGRARRISLPTVVLFLLGFLLWMANFPNLDAHFPRPFFNATEAGISSTVVSDSDATALEVAQNI YMLSLPARFDRRARMEILRKALGLQWTYVDALPGTNELTQRIWEWVMRVRDGKPIILNPNDNSHDRPSLGQVRFS WPDHIDQLAVSLSPIDFWAHTVWSTPILVHNPAPYRPTGCAMDDYRILNFSVELPEHLILTRARIACWYSHVSVL HKIANNKHQDLDSTYIILEDDIDMEKDISQRLASLWKSLPSDWDMVFLGHCWSNEETHPPLPNVYSQASNEGKNS SFAKPVRTIHHLHPSFKPKCTHAYAISKGGARRLLLHLRYPPFAYSRAIDQAIAWLIEQGRIKSYTVIPSLVIQT KTDLSDIAPGNGNDWGAQLEDGVLGGRLSV*
Coding	>AgabiH97\|013700 ATGGTTCTTACTTTATTTCCTCGCTTAAAGCTCACAGGAAGGGCCCGCCGTATCTCTCTACCCACTGTCGTCCTA TTTTTATTGGGATTTCTCCTCTGGATGGCCAATTTCCCGAATCTTGATGCTCATTTCCCACGTCCGTTCTTTAAT GCGACAGAAGCTGGGATATCATCCACTGTCGTTTCCGACAGTGACGCTACAGCATTGGAAGTGGCTCAGAACATT TACATGCTATCTCTCCCCGCAAGGTTTGACAGACGTGCTCGAATGGAGATCTTACGAAAGGCGTTGGGCTTGCAG TGGACATACGTGGACGCACTTCCAGGCACAAATGAACTAACGCAAAGAATCTGGGAATGGGTCATGCGAGTGCGC GATGGGAAGCCGATCATACTTAACCCCAATGATAACTCACACGACCGTCCATCCTTGGGGCAAGTTCGATTTTCC TGGCCGGACCACATCGACCAATTAGCGGTATCCTTATCACCTATCGATTTCTGGGCCCATACTGTATGGTCAACT CCTATATTAGTTCATAACCCCGCACCTTATCGACCAACCGGATGTGCAATGGATGACTATCGTATCCTCAACTTC AGTGTTGAATTGCCTGAACATTTGATCCTCACTCGCGCTCGGATTGCCTGTTGGTACTCGCATGTTTCAGTTCTC CACAAGATAGCCAACAACAAACATCAGGACCTGGATAGCACGTATATCATATTGGAAGACGATATCGATATGGAA AAAGACATCAGCCAGCGGCTCGCCAGCCTGTGGAAATCGCTTCCCTCGGATTGGGATATGGTATTCTTAGGCCAC TGCTGGTCCAATGAGGAAACTCATCCACCACTCCCGAATGTGTATTCACAAGCTTCCAACGAAGGAAAAAATTCG TCTTTCGCAAAACCTGTTCGAACTATTCATCACCTACATCCTTCTTTCAAGCCGAAATGCACTCATGCATATGCT ATTTCTAAAGGTGGGGCTCGGAGGTTACTCTTACACCTCCGATATCCCCCATTTGCGTATTCGCGTGCTATTGAT CAAGCTATCGCTTGGCTGATCGAGCAAGGAAGGATTAAAAGTTACACCGTGATACCTAGTTTAGTCATCCAAACA AAAACGGACCTTAGCGATATAGCACCCGGAAACGGGAACGACTGGGGTGCGCAACTAGAAGATGGTGTTCTTGGT GGACGACTTTCGGTGTAG
Transcript	>AgabiH97\|013700 ATGGTTCTTACTTTATTTCCTCGCTTAAAGCTCACAGGAAGGGCCCGCCGTATCTCTCTACCCACTGTCGTCCTA TTTTTATTGGGATTTCTCCTCTGGATGGCCAATTTCCCGAATCTTGATGCTCATTTCCCACGTCCGTTCTTTAAT GCGACAGAAGCTGGGATATCATCCACTGTCGTTTCCGACAGTGACGCTACAGCATTGGAAGTGGCTCAGAACATT TACATGCTATCTCTCCCCGCAAGGTTTGACAGACGTGCTCGAATGGAGATCTTACGAAAGGCGTTGGGCTTGCAG TGGACATACGTGGACGCACTTCCAGGCACAAATGAACTAACGCAAAGAATCTGGGAATGGGTCATGCGAGTGCGC GATGGGAAGCCGATCATACTTAACCCCAATGATAACTCACACGACCGTCCATCCTTGGGGCAAGTTCGATTTTCC TGGCCGGACCACATCGACCAATTAGCGGTATCCTTATCACCTATCGATTTCTGGGCCCATACTGTATGGTCAACT CCTATATTAGTTCATAACCCCGCACCTTATCGACCAACCGGATGTGCAATGGATGACTATCGTATCCTCAACTTC AGTGTTGAATTGCCTGAACATTTGATCCTCACTCGCGCTCGGATTGCCTGTTGGTACTCGCATGTTTCAGTTCTC CACAAGATAGCCAACAACAAACATCAGGACCTGGATAGCACGTATATCATATTGGAAGACGATATCGATATGGAA AAAGACATCAGCCAGCGGCTCGCCAGCCTGTGGAAATCGCTTCCCTCGGATTGGGATATGGTATTCTTAGGCCAC TGCTGGTCCAATGAGGAAACTCATCCACCACTCCCGAATGTGTATTCACAAGCTTCCAACGAAGGAAAAAATTCG TCTTTCGCAAAACCTGTTCGAACTATTCATCACCTACATCCTTCTTTCAAGCCGAAATGCACTCATGCATATGCT ATTTCTAAAGGTGGGGCTCGGAGGTTACTCTTACACCTCCGATATCCCCCATTTGCGTATTCGCGTGCTATTGAT CAAGCTATCGCTTGGCTGATCGAGCAAGGAAGGATTAAAAGTTACACCGTGATACCTAGTTTAGTCATCCAAACA AAAACGGACCTTAGCGATATAGCACCCGGAAACGGGAACGACTGGGGTGCGCAACTAGAAGATGGTGTTCTTGGT GGACGACTTTCGGTGTAG
Gene	>AgabiH97\|013700 ATGGTTCTTACTTTATTTCCTCGCTTAAAGCTCACAGGAAGGGCCCGCCGTATCTCTCTACCCACTGTCGTCCTA TTTTTATTGGGATTTCTCCTCTGGATGGCCAATTTCCCGAATCTTGATGCTCATTTCCCACGTCCGTTCTTTAAT GCGACAGAAGCTGGGATATCATCCACTGTCGTTTCCGACAGTGACGCTACAGCATTGGAAGTGGCTCAGAACATT TACATGCTATCTCTCCCCGCAAGGTTTGACAGACGTGCTCGAATGGAGATCTTACGAAAGGCGTTGGGCTTGCAG TGGACATACGTGGACGCACTTCCAGGCACAAATGAACTAACGCAAAGAATCTGGGAATGGGTCATGCGAGTGCGC GATGGGAAGCCGATCATACTTAACCCCAATGATAACTCACACGACCGTCCATCCTTGGGGCAAGTTCGATTTTCC TGGCCGGACCACATCGACCAATTAGCGGTATCCTTATCACCTATCGATTTCTGGGCCCATACTGTATGGTCAACT CCTATATTAGTTCATAACCCCGCACCTTATCGACCAACCGGATGTGCAATGGATGACTATCGTATCCTCAACTTC AGTGTTGAATTGCCTGAACATTTGATCCTCACTCGCGCTCGGATTGCCTGTTGGTACTCGCATGTTTCAGTTCTC CACAAGATAGCCAACAACAAACATCAGGACCTGGATAGCACGTATATCATATTGGAAGACGATATCGATATGGAA AAAGACATCAGCCAGCGGCTCGCCAGCCTGTGGAAATCGCTTCCCTCGGATTGGGATATGGTATTCTTAGGCACG TCAATGACAGGGTCATCACATTACATTATCTTGTTGCTCTAACGCCCACAACTAGGCCACTGCTGGTCCAATGAG GAAACTCATCCACCACTCCCGAATGTGTATTCACAAGCTTCCAACGAAGGAAAAAATTCGTCTTTCGCAAAACCT GTTCGAACTATTCATCACCTACATCCTTCTTTCAAGCCGAAATGCACTCATGCATATGCTATTTCTAAAGGTGGG GCTCGGAGGTTACTCTTACACCTCCGATATCCCCCATTTGCGTATTCGCGTGCTATTGATCAAGCTATCGCTTGG CTGATCGAGCAAGGAAGGATTAAAAGTTACACCGTGATACCTAGTTTAGTCATCCAAACAAAAACGGACCTTAGC GATATAGCACCCGGAAACGGGAACGACTGGGGTGCGCAACTAGAAGATGGTGTTCTTGGTGGACGACTTTCGGTG TAG

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