Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|013520
Gene name
Locationscaffold_1:3212900..3214789
Strand-
Gene length (bp)1889
Transcript length (bp)1488
Coding sequence length (bp)1488
Protein length (aa) 496

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01619 Pro_dh Proline dehydrogenase 1.6E-49 65 472

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q86H28|PROD_DICDI Proline dehydrogenase 1, mitochondrial OS=Dictyostelium discoideum GN=prodh PE=3 SV=1 14 478 8.0E-28
sp|Q2V057|PROD2_RAT Probable proline dehydrogenase 2 OS=Rattus norvegicus GN=Prodh2 PE=2 SV=1 10 491 4.0E-26
sp|Q8VCZ9|PROD2_MOUSE Probable proline dehydrogenase 2 OS=Mus musculus GN=Prodh2 PE=1 SV=1 10 491 5.0E-26
sp|A6QQ74|PROD2_BOVIN Probable proline dehydrogenase 2 OS=Bos taurus GN=PRODH2 PE=2 SV=1 10 479 1.0E-23
sp|Q6NKX1|PROD2_ARATH Proline dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=POX2 PE=2 SV=1 1 491 1.0E-23
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Swissprot ID Swissprot Description Start End E-value
sp|Q86H28|PROD_DICDI Proline dehydrogenase 1, mitochondrial OS=Dictyostelium discoideum GN=prodh PE=3 SV=1 14 478 8.0E-28
sp|Q2V057|PROD2_RAT Probable proline dehydrogenase 2 OS=Rattus norvegicus GN=Prodh2 PE=2 SV=1 10 491 4.0E-26
sp|Q8VCZ9|PROD2_MOUSE Probable proline dehydrogenase 2 OS=Mus musculus GN=Prodh2 PE=1 SV=1 10 491 5.0E-26
sp|A6QQ74|PROD2_BOVIN Probable proline dehydrogenase 2 OS=Bos taurus GN=PRODH2 PE=2 SV=1 10 479 1.0E-23
sp|Q6NKX1|PROD2_ARATH Proline dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=POX2 PE=2 SV=1 1 491 1.0E-23
sp|P92983|PROD1_ARATH Proline dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=POX1 PE=1 SV=2 1 495 3.0E-23
sp|Q9WU79|PROD_MOUSE Proline dehydrogenase 1, mitochondrial OS=Mus musculus GN=Prodh PE=1 SV=2 155 491 4.0E-23
sp|Q04499|PROD_DROME Proline dehydrogenase 1, mitochondrial OS=Drosophila melanogaster GN=slgA PE=1 SV=2 161 486 7.0E-23
sp|O43272|PROD_HUMAN Proline dehydrogenase 1, mitochondrial OS=Homo sapiens GN=PRODH PE=1 SV=3 118 471 4.0E-22
sp|Q9UF12|PROD2_HUMAN Probable proline dehydrogenase 2 OS=Homo sapiens GN=PRODH2 PE=2 SV=1 10 491 8.0E-22
sp|Q148G5|PROD_BOVIN Proline dehydrogenase 1, mitochondrial OS=Bos taurus GN=PRODH PE=2 SV=1 155 491 3.0E-21
sp|Q6PAY6|PROD2_XENLA Probable proline dehydrogenase 2 OS=Xenopus laevis GN=prodh2 PE=2 SV=1 8 314 6.0E-20
sp|O74524|PROD_SCHPO Probable proline dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC70.03c PE=3 SV=1 14 491 1.0E-19
sp|O45228|PROD_CAEEL Proline dehydrogenase 1, mitochondrial OS=Caenorhabditis elegans GN=B0513.5 PE=3 SV=2 155 333 9.0E-15
sp|Q9XB58|CARD_PECCC Carbapenem antibiotics biosynthesis protein CarD OS=Pectobacterium carotovorum subsp. carotovorum GN=carD PE=3 SV=1 115 467 2.0E-13
sp|O45228|PROD_CAEEL Proline dehydrogenase 1, mitochondrial OS=Caenorhabditis elegans GN=B0513.5 PE=3 SV=2 415 492 5.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 30 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|013520
MLSSPCVRDITEAFVRTTFFGHFVGGDTAEGTLPLLRAFRRANKGAILAYSVEVDPSSVPSHTSNEISKDKLSQK
QLIKEIIHSIDVAASFEDALNGGRRTWVALKLTALLPNAQALTNLSKHIVQSRALEPDQVPFPGCPRSSDLDVIL
APTSLTPLTEKDTADLRELYSDIHRVCEHAQTRGVKIIIDAEWSWYEPAICAIALALMREFNTLSNHQSTMQPLI
YTTFQAYLRRTPSHLALALADARRNNYSLGVKLVRGAYHPYEIAAHKSKETSMSISPDELPPVWEKKEETDRCYD
NCVKVLINGVREDLSNRQDVHTLRSSEDNLRLAEASRSETIKGPISHPIRDLLPAVGPDSKKIPSIGILFGTHNW
ESSKLILRELERNGLAESLPEEPRPDDGATVIRVKPEVVERVAIGQLFGMSDDLTQYLVDRTRTTTPFIIKYVPY
GGLREVMPYLSRRAVENKSVLGEGKTAEERRRAGRALWKRITFQI*
Coding >AgabiH97|013520
ATGCTGTCTTCACCATGTGTTCGTGATATCACAGAGGCGTTCGTTAGAACAACGTTCTTCGGTCATTTCGTTGGC
GGTGATACTGCGGAAGGCACTTTGCCCCTTTTACGTGCCTTCCGCAGGGCCAACAAAGGCGCCATCCTCGCCTAC
TCGGTCGAAGTCGATCCCTCTTCTGTTCCTTCACATACGAGTAATGAAATCTCTAAGGATAAACTTTCGCAAAAG
CAGCTGATAAAGGAGATAATCCACTCCATCGATGTCGCTGCTAGTTTTGAAGACGCCTTAAACGGCGGGAGGCGC
ACCTGGGTCGCCCTCAAGTTAACAGCTCTCTTGCCCAATGCTCAGGCTCTCACTAACCTATCCAAGCACATTGTT
CAGTCTCGCGCTCTCGAACCTGACCAAGTTCCATTCCCAGGCTGTCCTCGGTCCTCTGACCTAGATGTAATTTTG
GCCCCCACCTCTCTGACCCCCCTGACCGAGAAGGACACCGCGGATCTGCGTGAGCTATATAGTGATATTCATCGT
GTGTGTGAACATGCACAAACGCGAGGCGTCAAAATCATAATAGATGCTGAGTGGAGTTGGTACGAACCCGCCATT
TGCGCAATCGCCCTCGCGTTGATGCGCGAGTTTAATACTCTTTCCAATCATCAGTCTACAATGCAACCCCTGATC
TACACCACCTTTCAAGCTTATCTCAGGAGAACACCGTCTCATCTAGCCCTCGCTCTCGCTGATGCACGAAGGAAT
AACTACTCGCTAGGTGTCAAACTTGTCAGGGGTGCTTATCATCCCTATGAAATCGCCGCACACAAGTCCAAAGAA
ACTTCTATGTCTATATCACCAGATGAACTCCCGCCAGTATGGGAGAAGAAGGAAGAAACGGACCGATGTTACGAT
AACTGTGTCAAGGTGCTAATAAACGGTGTCCGCGAAGATCTCTCTAATAGGCAAGACGTCCATACTTTGAGAAGT
TCCGAGGATAATTTGAGACTTGCCGAGGCCTCGAGGAGTGAAACAATCAAGGGTCCTATCTCTCACCCAATCAGA
GATCTATTGCCCGCCGTAGGGCCGGATAGCAAGAAAATTCCTTCTATCGGTATTCTATTCGGCACACATAACTGG
GAAAGCTCTAAATTGATACTCCGGGAATTGGAGCGTAACGGTCTCGCGGAATCGCTTCCGGAAGAGCCTAGACCA
GACGACGGCGCAACAGTGATAAGGGTCAAACCTGAAGTCGTGGAGCGTGTGGCCATCGGCCAATTATTTGGTATG
AGTGATGACTTGACTCAATATCTCGTCGATCGTACCAGGACGACAACACCGTTTATCATCAAATATGTTCCATAC
GGAGGCCTCCGCGAAGTAATGCCCTATTTAAGCAGAAGGGCAGTCGAGAACAAATCCGTACTCGGTGAAGGCAAG
ACCGCCGAGGAACGCCGACGAGCCGGTAGGGCCTTATGGAAGAGGATCACTTTCCAAATATGA
Transcript >AgabiH97|013520
ATGCTGTCTTCACCATGTGTTCGTGATATCACAGAGGCGTTCGTTAGAACAACGTTCTTCGGTCATTTCGTTGGC
GGTGATACTGCGGAAGGCACTTTGCCCCTTTTACGTGCCTTCCGCAGGGCCAACAAAGGCGCCATCCTCGCCTAC
TCGGTCGAAGTCGATCCCTCTTCTGTTCCTTCACATACGAGTAATGAAATCTCTAAGGATAAACTTTCGCAAAAG
CAGCTGATAAAGGAGATAATCCACTCCATCGATGTCGCTGCTAGTTTTGAAGACGCCTTAAACGGCGGGAGGCGC
ACCTGGGTCGCCCTCAAGTTAACAGCTCTCTTGCCCAATGCTCAGGCTCTCACTAACCTATCCAAGCACATTGTT
CAGTCTCGCGCTCTCGAACCTGACCAAGTTCCATTCCCAGGCTGTCCTCGGTCCTCTGACCTAGATGTAATTTTG
GCCCCCACCTCTCTGACCCCCCTGACCGAGAAGGACACCGCGGATCTGCGTGAGCTATATAGTGATATTCATCGT
GTGTGTGAACATGCACAAACGCGAGGCGTCAAAATCATAATAGATGCTGAGTGGAGTTGGTACGAACCCGCCATT
TGCGCAATCGCCCTCGCGTTGATGCGCGAGTTTAATACTCTTTCCAATCATCAGTCTACAATGCAACCCCTGATC
TACACCACCTTTCAAGCTTATCTCAGGAGAACACCGTCTCATCTAGCCCTCGCTCTCGCTGATGCACGAAGGAAT
AACTACTCGCTAGGTGTCAAACTTGTCAGGGGTGCTTATCATCCCTATGAAATCGCCGCACACAAGTCCAAAGAA
ACTTCTATGTCTATATCACCAGATGAACTCCCGCCAGTATGGGAGAAGAAGGAAGAAACGGACCGATGTTACGAT
AACTGTGTCAAGGTGCTAATAAACGGTGTCCGCGAAGATCTCTCTAATAGGCAAGACGTCCATACTTTGAGAAGT
TCCGAGGATAATTTGAGACTTGCCGAGGCCTCGAGGAGTGAAACAATCAAGGGTCCTATCTCTCACCCAATCAGA
GATCTATTGCCCGCCGTAGGGCCGGATAGCAAGAAAATTCCTTCTATCGGTATTCTATTCGGCACACATAACTGG
GAAAGCTCTAAATTGATACTCCGGGAATTGGAGCGTAACGGTCTCGCGGAATCGCTTCCGGAAGAGCCTAGACCA
GACGACGGCGCAACAGTGATAAGGGTCAAACCTGAAGTCGTGGAGCGTGTGGCCATCGGCCAATTATTTGGTATG
AGTGATGACTTGACTCAATATCTCGTCGATCGTACCAGGACGACAACACCGTTTATCATCAAATATGTTCCATAC
GGAGGCCTCCGCGAAGTAATGCCCTATTTAAGCAGAAGGGCAGTCGAGAACAAATCCGTACTCGGTGAAGGCAAG
ACCGCCGAGGAACGCCGACGAGCCGGTAGGGCCTTATGGAAGAGGATCACTTTCCAAATATGA
Gene >AgabiH97|013520
ATGCTGTCTTCACCATGTGCTCAATACCACAACTCGTGGAACATTCCCCAAAGATTCTCAGTGTCCTAACCAGTG
TTCCAGGTGTTCGTGATATCACAGAGGCGTTCGTTAGAACAACGTTCTTCGGTCATGTACGTGTCTCCGTGCCCT
CCGGACCCTTAGACTCACAAGAATGCAGTTCGTTGGCGGTGATACTGCGGAAGGCACTTTGCCCCTTTTACGTGC
CTTCCGCAGGGCCAACAAAGGCGCCATCCTCGCCTACTCGGTCGAAGTCGATCCCTCTTCTGTTCCTTCACATAC
GAGTAATGAAATCTCTAAGGATAAACTTTCGCAAAAGCAGCTGATAAAGGAGATAATCCACTCCATCGATGTCGC
TGCTAGTTTTGAAGACGCCTTAAACGGCGGGAGGCGCACCTGGGTCGCCCTCAAGTTAGTAAGTCGGGAACACTT
GTAGTACCTCCCCCTCTCTCTCAACCTCACGCAGACAGCTCTCTTGCCCAATGCTCAGGCTCTCACTAACCTATC
CAAGCACATTGTTCAGTCTCGCGCTCTCGAACCTGACCAAGTTCCATTCCCAGGCTGTCCTCGGTCCTCTGACCT
AGATGTAATTTTGGCCCCCACCTCTCTGACCCCCCTGACCGAGAAGGACACCGCGGATCTGCGTGAGCTATATAG
TGATATTCATCGTGTGTGTGAACATGCACAAACGCGAGGCGTCAAAATCATAATAGATGCTGAGTGGAGGTACGT
GCCCCGTAACATCGCGAGCAAATGTTCTCTGATTAATGACGTCATTATTGTGGGGAAATAGTTGGTACGAACCCG
CCATTTGCGCAATCGCCCTCGCGTTGATGCGCGAGTTTAATACTCTTTCCAATCATCAGTCTACAATGCAACCCC
TGATCTACACCACCTTTCAAGCTTATCTCAGGAGGTCAACTATACCCTTCTCTCGCTTACAAGTAGCTTACCACT
TTCTGTTAGAACACCGTCTCATCTAGCCCTCGCTCTCGCTGATGCACGAAGGAATAACTACTCGCTAGGTGTCAA
ACTTGTCAGGGGTGCTTATCATCCCTATGAAATCGCCGCACACAAGTCCAAAGAAACTTCTATGTCTATATCACC
AGATGAACTCCCGCCAGTATGGGAGAAGAAGGAAGAAACGGACCGATGTTACGATAACTGTGTCAAGGTGCTAAT
AAACGGTGTCCGCGAAGATCTCTCTAATAGGCAAGACGTCCATACTTTGAGAAGTTCCGAGGATAATTTGAGACT
TGCCGAGGCCTCGAGGAGTGAAACAATCAAGGGTCCTATCTCTCACCCAATCAGAGATCTATTGCCCGCCGTAGG
GCCGGATAGCAAGAAAATTCCTTCTATCGGTATTCTATTCGGCACACATAACTGGGAAAGCTCTAAATTGATACT
CCGGGAATTGGAGCGTAACGGTCTCGCGGAATCGCTTCCGGAAGAGCCTAGACCAGACGACGGCGCAACAGTGAT
AAGGGTCAAACCTGAAGTCGTGGAGCGTGTGGCCATCGGCCAATTATTTGGTGGGTGTTTGATTACACATCAATT
TCGCTTTCTATTTTGGCTGATCGTCGATGTCGATTTGATCAGGTATGAGTGATGACTTGACTCAATATCTCGTCG
ATCGTACCAGGACGACAACACCGTTTATCATCAAGTCAGCTTATCTCCATTCATGAGATAACTTGAGCTTACTAT
ATCCGTTCTCTAGATATGTTCCATACGGAGGCCTCCGCGAAGTAATGCCCTATTTAAGCAGAAGGGCAGTCGAGA
ACAAATCCGTACTCGGTGAAGGCAAGACCGCCGAGGAACGCCGACGAGCCGGTAGGGCCTTATGGAAGAGGATCA
CTTTCCAAATATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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