Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|012730
Gene name
Locationscaffold_1:3016700..3017867
Strand+
Gene length (bp)1167
Transcript length (bp)1167
Coding sequence length (bp)1167
Protein length (aa) 389

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 4.4E-10 255 358
PF08284 RVP_2 Retroviral aspartyl protease 7.7E-10 34 132
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 6.5E-09 26 117
PF13650 Asp_protease_2 Aspartyl protease 2.1E-07 25 115

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3 218 356 4.0E-30
sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2 218 356 5.0E-30
sp|P0CT38|TF25_SCHPO Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-5 PE=3 SV=1 30 355 1.0E-28
sp|P0CT36|TF23_SCHPO Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1 30 355 1.0E-28
sp|P0CT41|TF212_SCHPO Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1 30 355 1.0E-28
[Show all]
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Swissprot ID Swissprot Description Start End E-value
sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3 218 356 4.0E-30
sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2 218 356 5.0E-30
sp|P0CT38|TF25_SCHPO Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-5 PE=3 SV=1 30 355 1.0E-28
sp|P0CT36|TF23_SCHPO Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1 30 355 1.0E-28
sp|P0CT41|TF212_SCHPO Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1 30 355 1.0E-28
sp|P0CT40|TF29_SCHPO Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1 30 355 1.0E-28
sp|P0CT37|TF24_SCHPO Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-4 PE=3 SV=1 30 355 1.0E-28
sp|P0CT35|TF22_SCHPO Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-2 PE=3 SV=1 30 355 1.0E-28
sp|P0CT34|TF21_SCHPO Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-1 PE=3 SV=1 30 355 1.0E-28
sp|P0CT39|TF26_SCHPO Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1 30 355 1.0E-28
sp|P0CT43|TF28_SCHPO Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1 30 356 2.0E-28
sp|P0CT42|TF27_SCHPO Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-7 PE=3 SV=1 30 356 2.0E-28
sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1 30 356 3.0E-28
sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1 108 363 2.0E-24
sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=3 SV=1 208 357 9.0E-23
sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1 191 363 5.0E-22
sp|P31843|RRPO_OENBE RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1 261 357 2.0E-19
sp|P03555|POL_CAMVC Enzymatic polyprotein OS=Cauliflower mosaic virus (strain CM-1841) GN=ORF V PE=3 SV=1 17 354 6.0E-19
sp|P03554|POL_CAMVS Enzymatic polyprotein OS=Cauliflower mosaic virus (strain Strasbourg) GN=ORF V PE=3 SV=1 17 354 2.0E-18
sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=3 SV=1 104 357 2.0E-18
sp|Q02964|POL_CAMVE Enzymatic polyprotein OS=Cauliflower mosaic virus (strain BBC) GN=ORF V PE=3 SV=1 17 354 2.0E-17
sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=3 SV=1 213 353 3.0E-17
sp|Q00962|POL_CAMVN Enzymatic polyprotein OS=Cauliflower mosaic virus (strain NY8153) GN=ORF V PE=3 SV=1 17 354 6.0E-17
sp|P03556|POL_CAMVD Enzymatic polyprotein OS=Cauliflower mosaic virus (strain D/H) GN=ORF V PE=3 SV=1 17 354 1.0E-16
sp|P19199|POL_COYMV Polyprotein P3 OS=Commelina yellow mottle virus PE=3 SV=2 220 354 5.0E-13
sp|P09523|POL_FMVD Enzymatic polyprotein OS=Figwort mosaic virus (strain DxS) GN=ORF V PE=3 SV=1 213 351 5.0E-13
sp|P15629|POL_SOCMV Enzymatic polyprotein OS=Soybean chlorotic mottle virus GN=ORF V PE=3 SV=2 201 349 1.0E-11
sp|P05400|POL_CERV Enzymatic polyprotein OS=Carnation etched ring virus GN=ORF V PE=3 SV=1 211 350 6.0E-11
sp|Q91DM0|POLG_PVCV1 Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1 210 357 1.0E-10
sp|Q6XKE6|POLG_PVCV2 Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3 SV=1 210 357 1.0E-10
sp|Q86TG7|PEG10_HUMAN Retrotransposon-derived protein PEG10 OS=Homo sapiens GN=PEG10 PE=1 SV=2 8 308 1.0E-10
sp|Q89703|POL_CSVMV Putative enzymatic polyprotein OS=Cassava vein mosaic virus GN=ORF 3 PE=3 SV=1 222 354 2.0E-09
sp|A6NKG5|RTL1_HUMAN Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=3 SV=3 31 357 2.0E-08
sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10 OS=Mus musculus GN=Peg10 PE=1 SV=2 8 133 5.0E-08
sp|Q09575|YRD6_CAEEL Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans GN=K02A2.6 PE=3 SV=1 246 349 1.0E-07
sp|P27502|POL_RTBVP Polyprotein P3 OS=Rice tungro bacilliform virus (isolate Philippines) PE=1 SV=1 33 356 6.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 67 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|012730
MNNRYVVPQKRLGVQELEVKPLLTTTNGKKLKVSAMVDSGCTHTCIDEGLVKRKKIPTKKLERPITCRNSDGTIA
GKKDITKFAKIDININGHNEQLDAVVTPLQSSDLFLGHDWLTNHNPEINWKQGIIKFNRCPTSCSFPHTDISFEP
RIRRLQSNEDTEEKEPDPTNPEDLPAYMKPFAHLFNKKNFDKLPERTEWDHEVNFTENAPTEISSKVYSMTPLER
EELDKFLDENLATNRIRPSKSPYAAPCFFVPKKDGSLRLCQDYRKLNEITIKDKTPLPLISEVLDQLKDAKVFNK
LDIIWGYNNVRIREGDEWKAAFLTNRGLFEPTVMFFGMSNSPATFSRMMATIFREMIQDGSLANYSGSKNCPSVS
RFCTICVIAQWVL*
Coding >AgabiH97|012730
ATGAACAATCGATACGTTGTCCCTCAAAAACGTCTAGGAGTGCAAGAACTGGAAGTAAAACCTCTCCTCACTACA
ACAAACGGAAAGAAACTCAAAGTCTCAGCCATGGTCGACTCGGGATGCACACACACATGTATCGACGAAGGATTA
GTAAAGAGGAAGAAGATCCCGACGAAGAAATTGGAACGGCCGATCACATGCAGGAATTCAGATGGAACGATAGCA
GGAAAGAAGGATATCACCAAATTCGCGAAGATAGACATAAACATCAATGGTCATAACGAGCAACTGGACGCAGTC
GTCACTCCATTACAGTCATCCGACCTCTTTCTGGGTCATGATTGGTTAACGAACCACAACCCTGAGATCAATTGG
AAACAAGGAATTATCAAATTCAACCGGTGCCCCACATCATGTTCTTTTCCCCATACCGACATCTCTTTCGAACCA
CGTATACGACGATTACAATCAAATGAAGACACTGAGGAAAAAGAACCGGATCCAACGAACCCTGAAGACTTACCA
GCATACATGAAACCCTTCGCCCATCTTTTCAACAAAAAGAACTTCGACAAGCTACCTGAACGAACGGAATGGGAC
CACGAAGTTAACTTCACAGAAAACGCACCAACGGAAATATCATCAAAGGTTTATAGCATGACACCACTAGAGAGA
GAAGAACTGGACAAATTTTTGGACGAAAACCTGGCTACCAATCGAATCCGACCATCAAAATCACCCTATGCAGCA
CCATGTTTTTTCGTTCCCAAGAAAGACGGTTCACTAAGGTTATGTCAGGATTATAGGAAGCTGAACGAAATCACG
ATCAAAGACAAGACGCCACTACCCCTCATCAGTGAAGTATTAGATCAACTCAAAGACGCCAAGGTTTTCAACAAA
TTGGACATTATCTGGGGGTACAACAACGTTCGGATACGAGAAGGAGATGAATGGAAAGCAGCGTTCTTGACGAAT
CGCGGATTATTTGAACCAACGGTCATGTTCTTTGGAATGAGTAATTCCCCCGCCACCTTCTCACGTATGATGGCG
ACAATCTTTCGAGAAATGATACAAGACGGATCTTTAGCCAACTACAGTGGCTCAAAAAACTGTCCCAGTGTTTCG
AGGTTTTGCACTATTTGCGTCATAGCACAATGGGTTTTATGA
Transcript >AgabiH97|012730
ATGAACAATCGATACGTTGTCCCTCAAAAACGTCTAGGAGTGCAAGAACTGGAAGTAAAACCTCTCCTCACTACA
ACAAACGGAAAGAAACTCAAAGTCTCAGCCATGGTCGACTCGGGATGCACACACACATGTATCGACGAAGGATTA
GTAAAGAGGAAGAAGATCCCGACGAAGAAATTGGAACGGCCGATCACATGCAGGAATTCAGATGGAACGATAGCA
GGAAAGAAGGATATCACCAAATTCGCGAAGATAGACATAAACATCAATGGTCATAACGAGCAACTGGACGCAGTC
GTCACTCCATTACAGTCATCCGACCTCTTTCTGGGTCATGATTGGTTAACGAACCACAACCCTGAGATCAATTGG
AAACAAGGAATTATCAAATTCAACCGGTGCCCCACATCATGTTCTTTTCCCCATACCGACATCTCTTTCGAACCA
CGTATACGACGATTACAATCAAATGAAGACACTGAGGAAAAAGAACCGGATCCAACGAACCCTGAAGACTTACCA
GCATACATGAAACCCTTCGCCCATCTTTTCAACAAAAAGAACTTCGACAAGCTACCTGAACGAACGGAATGGGAC
CACGAAGTTAACTTCACAGAAAACGCACCAACGGAAATATCATCAAAGGTTTATAGCATGACACCACTAGAGAGA
GAAGAACTGGACAAATTTTTGGACGAAAACCTGGCTACCAATCGAATCCGACCATCAAAATCACCCTATGCAGCA
CCATGTTTTTTCGTTCCCAAGAAAGACGGTTCACTAAGGTTATGTCAGGATTATAGGAAGCTGAACGAAATCACG
ATCAAAGACAAGACGCCACTACCCCTCATCAGTGAAGTATTAGATCAACTCAAAGACGCCAAGGTTTTCAACAAA
TTGGACATTATCTGGGGGTACAACAACGTTCGGATACGAGAAGGAGATGAATGGAAAGCAGCGTTCTTGACGAAT
CGCGGATTATTTGAACCAACGGTCATGTTCTTTGGAATGAGTAATTCCCCCGCCACCTTCTCACGTATGATGGCG
ACAATCTTTCGAGAAATGATACAAGACGGATCTTTAGCCAACTACAGTGGCTCAAAAAACTGTCCCAGTGTTTCG
AGGTTTTGCACTATTTGCGTCATAGCACAATGGGTTTTATGA
Gene >AgabiH97|012730
ATGAACAATCGATACGTTGTCCCTCAAAAACGTCTAGGAGTGCAAGAACTGGAAGTAAAACCTCTCCTCACTACA
ACAAACGGAAAGAAACTCAAAGTCTCAGCCATGGTCGACTCGGGATGCACACACACATGTATCGACGAAGGATTA
GTAAAGAGGAAGAAGATCCCGACGAAGAAATTGGAACGGCCGATCACATGCAGGAATTCAGATGGAACGATAGCA
GGAAAGAAGGATATCACCAAATTCGCGAAGATAGACATAAACATCAATGGTCATAACGAGCAACTGGACGCAGTC
GTCACTCCATTACAGTCATCCGACCTCTTTCTGGGTCATGATTGGTTAACGAACCACAACCCTGAGATCAATTGG
AAACAAGGAATTATCAAATTCAACCGGTGCCCCACATCATGTTCTTTTCCCCATACCGACATCTCTTTCGAACCA
CGTATACGACGATTACAATCAAATGAAGACACTGAGGAAAAAGAACCGGATCCAACGAACCCTGAAGACTTACCA
GCATACATGAAACCCTTCGCCCATCTTTTCAACAAAAAGAACTTCGACAAGCTACCTGAACGAACGGAATGGGAC
CACGAAGTTAACTTCACAGAAAACGCACCAACGGAAATATCATCAAAGGTTTATAGCATGACACCACTAGAGAGA
GAAGAACTGGACAAATTTTTGGACGAAAACCTGGCTACCAATCGAATCCGACCATCAAAATCACCCTATGCAGCA
CCATGTTTTTTCGTTCCCAAGAAAGACGGTTCACTAAGGTTATGTCAGGATTATAGGAAGCTGAACGAAATCACG
ATCAAAGACAAGACGCCACTACCCCTCATCAGTGAAGTATTAGATCAACTCAAAGACGCCAAGGTTTTCAACAAA
TTGGACATTATCTGGGGGTACAACAACGTTCGGATACGAGAAGGAGATGAATGGAAAGCAGCGTTCTTGACGAAT
CGCGGATTATTTGAACCAACGGTCATGTTCTTTGGAATGAGTAATTCCCCCGCCACCTTCTCACGTATGATGGCG
ACAATCTTTCGAGAAATGATACAAGACGGATCTTTAGCCAACTACAGTGGCTCAAAAAACTGTCCCAGTGTTTCG
AGGTTTTGCACTATTTGCGTCATAGCACAATGGGTTTTATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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