© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|012160 |
| Gene name | |
| Location | scaffold_1:2892434..2894503 |
| Strand | + |
| Gene length (bp) | 2069 |
| Transcript length (bp) | 1404 |
| Coding sequence length (bp) | 1404 |
| Protein length (aa) | 468 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05978 | UNC-93 | Ion channel regulatory protein UNC-93 | 3.1E-19 | 75 | 407 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 2.1E-13 | 75 | 408 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9URX1|YLX5_SCHPO | UNC93-like protein C922.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC922.05c PE=3 SV=1 | 18 | 460 | 1.0E-136 |
| sp|Q8LG53|UN932_ARATH | UNC93-like protein 2 OS=Arabidopsis thaliana GN=At1g18010 PE=2 SV=2 | 28 | 447 | 2.0E-103 |
| sp|Q56WD3|UN931_ARATH | UNC93-like protein 1 OS=Arabidopsis thaliana GN=At1g18000 PE=2 SV=2 | 28 | 447 | 2.0E-103 |
| sp|O14237|YEL4_SCHPO | Uncharacterized membrane protein C6F6.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6F6.04c PE=4 SV=1 | 34 | 462 | 2.0E-51 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0051179 | localization | No |
| GO:0003674 | molecular_function | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0009987 | cellular process | No |
| GO:0005215 | transporter activity | No |
| GO:0006810 | transport | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane|Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.0816 | 0.1087 | 0.093 | 0.5582 | 0.0415 | 0.0053 | 0.4412 | 0.6228 | 0.475 | 0.0039 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 37 | 59 | 22 |
| 2 | 69 | 91 | 22 |
| 3 | 96 | 118 | 22 |
| 4 | 123 | 145 | 22 |
| 5 | 158 | 180 | 22 |
| 6 | 190 | 212 | 22 |
| 7 | 249 | 266 | 17 |
| 8 | 286 | 303 | 17 |
| 9 | 315 | 334 | 19 |
| 10 | 362 | 384 | 22 |
| 11 | 391 | 413 | 22 |
| 12 | 423 | 445 | 22 |
| Orthofinder run ID | 1 |
| Orthogroup | 527 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|012160 MNDQEKPDGTDTSSQVYYERPKGLRGLYSHPLTQVTILGLVCFMCPGLFNALTGLGGGGQVDPITNDHANVALNA TFSVAAFFAGSINNILGARLTLFIGSCGYALYIGSYLALNIHSNARGFVVGAGAILGICAGLLWTAQGSLMLAYP TEIQKGRYISIFWAIFNLGGVVGASVSLGTNYNSKANAVGNGTYIGFLVLTLCGTILPLVMVDPKNMIRSDGTKV TVSKQPSWRTELMRLPRAIRKDPMIILLFPMFLASNWFYTWQFTDYNGAIFNIRARALNNVVYWLAQIVGSILVG LVLDSKRLRRRIRAFTGWGILFALIWVVHIWGYFYQRQYTRESLSKTDIRMDIFDAPYGGRIMLYIMCGILDATW QVTTYWIMGAMSNDASTLAYLIGFYKSIQSAGAAGAWAADSRKEPYMNLFVSTWVILLAGLFFALPMIYWRVTDQ TDTTPDDNTPSDSKADA* |
| Coding | >AgabiH97|012160 ATGAACGACCAAGAGAAACCCGACGGCACTGATACAAGTTCTCAGGTCTATTATGAACGCCCCAAAGGGCTCAGG GGACTGTATTCTCACCCATTAACTCAGGTGACGATACTTGGCCTCGTTTGTTTCATGTGTCCAGGTCTCTTCAAC GCCCTTACTGGATTGGGAGGAGGTGGCCAAGTCGACCCCATAACTAACGATCATGCAAACGTGGCACTTAATGCT ACGTTTTCGGTCGCCGCATTTTTTGCTGGATCCATAAACAATATACTTGGTGCCCGGCTCACTTTATTCATTGGA AGCTGTGGTTATGCCCTGTACATTGGTTCATATCTGGCTTTGAACATCCACTCCAATGCCCGCGGTTTCGTGGTC GGGGCTGGCGCTATCCTTGGAATATGTGCTGGTCTGCTATGGACTGCTCAGGGTTCCCTCATGTTAGCATACCCA ACAGAAATTCAGAAAGGTCGCTACATCAGTATCTTCTGGGCCATTTTCAACTTGGGCGGAGTTGTTGGGGCATCT GTATCCCTCGGCACAAATTACAATTCCAAGGCCAACGCAGTTGGAAATGGGACATATATTGGGTTTTTGGTCCTT ACACTATGTGGGACTATCCTCCCCCTTGTCATGGTAGATCCGAAGAATATGATCAGATCAGATGGAACGAAAGTT ACCGTCTCCAAACAACCTTCTTGGAGGACAGAACTCATGAGGCTCCCCCGCGCCATTAGGAAAGATCCTATGATC ATATTGCTGTTCCCTATGTTCCTTGCTTCAAACTGGTTCTACACTTGGCAATTCACTGACTACAACGGTGCCATC TTCAACATCAGAGCGCGTGCCTTGAACAACGTCGTATACTGGCTGGCACAAATTGTGGGGTCGATTCTCGTCGGA TTGGTCCTCGACAGCAAGCGCCTTCGTCGAAGAATCAGGGCCTTCACTGGCTGGGGTATTCTCTTTGCTCTTATA TGGGTCGTCCACATCTGGGGCTACTTTTATCAGAGGCAATATACCCGCGAGTCACTTAGCAAGACTGATATCAGG ATGGATATCTTTGATGCGCCGTACGGAGGAAGAATTATGCTGTATATCATGTGTGGCATTTTGGACGCTACATGG CAAGTAACGACGTATTGGATCATGGGCGCCATGTCGAACGACGCTTCCACACTAGCATACCTCATTGGATTTTAT AAATCTATCCAATCTGCAGGAGCCGCAGGAGCCTGGGCTGCGGACAGTCGCAAAGAACCATACATGAACTTATTC GTTTCCACTTGGGTTATTCTCTTGGCTGGCCTCTTCTTTGCTCTGCCGATGATTTACTGGCGTGTCACTGATCAG ACAGATACTACTCCGGATGATAACACGCCATCCGATTCGAAGGCGGACGCTTGA |
| Transcript | >AgabiH97|012160 ATGAACGACCAAGAGAAACCCGACGGCACTGATACAAGTTCTCAGGTCTATTATGAACGCCCCAAAGGGCTCAGG GGACTGTATTCTCACCCATTAACTCAGGTGACGATACTTGGCCTCGTTTGTTTCATGTGTCCAGGTCTCTTCAAC GCCCTTACTGGATTGGGAGGAGGTGGCCAAGTCGACCCCATAACTAACGATCATGCAAACGTGGCACTTAATGCT ACGTTTTCGGTCGCCGCATTTTTTGCTGGATCCATAAACAATATACTTGGTGCCCGGCTCACTTTATTCATTGGA AGCTGTGGTTATGCCCTGTACATTGGTTCATATCTGGCTTTGAACATCCACTCCAATGCCCGCGGTTTCGTGGTC GGGGCTGGCGCTATCCTTGGAATATGTGCTGGTCTGCTATGGACTGCTCAGGGTTCCCTCATGTTAGCATACCCA ACAGAAATTCAGAAAGGTCGCTACATCAGTATCTTCTGGGCCATTTTCAACTTGGGCGGAGTTGTTGGGGCATCT GTATCCCTCGGCACAAATTACAATTCCAAGGCCAACGCAGTTGGAAATGGGACATATATTGGGTTTTTGGTCCTT ACACTATGTGGGACTATCCTCCCCCTTGTCATGGTAGATCCGAAGAATATGATCAGATCAGATGGAACGAAAGTT ACCGTCTCCAAACAACCTTCTTGGAGGACAGAACTCATGAGGCTCCCCCGCGCCATTAGGAAAGATCCTATGATC ATATTGCTGTTCCCTATGTTCCTTGCTTCAAACTGGTTCTACACTTGGCAATTCACTGACTACAACGGTGCCATC TTCAACATCAGAGCGCGTGCCTTGAACAACGTCGTATACTGGCTGGCACAAATTGTGGGGTCGATTCTCGTCGGA TTGGTCCTCGACAGCAAGCGCCTTCGTCGAAGAATCAGGGCCTTCACTGGCTGGGGTATTCTCTTTGCTCTTATA TGGGTCGTCCACATCTGGGGCTACTTTTATCAGAGGCAATATACCCGCGAGTCACTTAGCAAGACTGATATCAGG ATGGATATCTTTGATGCGCCGTACGGAGGAAGAATTATGCTGTATATCATGTGTGGCATTTTGGACGCTACATGG CAAGTAACGACGTATTGGATCATGGGCGCCATGTCGAACGACGCTTCCACACTAGCATACCTCATTGGATTTTAT AAATCTATCCAATCTGCAGGAGCCGCAGGAGCCTGGGCTGCGGACAGTCGCAAAGAACCATACATGAACTTATTC GTTTCCACTTGGGTTATTCTCTTGGCTGGCCTCTTCTTTGCTCTGCCGATGATTTACTGGCGTGTCACTGATCAG ACAGATACTACTCCGGATGATAACACGCCATCCGATTCGAAGGCGGACGCTTGA |
| Gene | >AgabiH97|012160 ATGAACGACCAAGAGAAACCCGACGGCACTGATACAAGTTCTCAGGTCTATTATGAACGCCCCAAAGGGCTCAGG GGACTGTATTCTCACCCATTAACTCAGGTCCTATATTTTTTTCTTTCTCATCGGCGACGAATCTGAAGCTACGCA GGTGACGATACTTGGCCTCGTTTGTTTCATGTGTCCAGGTATGAGCTAGTCTCAAGACTGGTAATGATGATCGCT GACACGCCGTAACAGGTCTCTTCAACGCCCTTACTGGATTGGGAGGAGGTGGCCAAGTCGACCCCATAACTAACG ATCATGCAAACGTGGCACTTAATGCTACGTTTTCGGTCGCCGCATTTTTTGCTGGGTATGCGTATCATCTCTTTC GCATCTTGTATGGTCACTCGACCAATGCCTAATTGATATAATTTTACAGATCCATAAACAATATACTTGGTGCCC GGCTCACTTTATTCATTGGAAGCTGTGGTTATGCCCTGTACATTGGTTCATATCTGTGAGTGTCACCAACTACAT GAACGATTGACTGATGTTTTGAACTTTTCTCACAGGGCTTTGAACATCCACTCCAATGCCCGCGGTTTCGTGGTC GGGGCTGGCGCTATCCTTGGAATATGTGCTGGTCTGCTATGGACTGCTCAGGGTTCCCTCATGTTAGCATACCCA ACAGAAATTCAGAAAGGTCGCTACATCAGTATCTTCTGGGCCATTTTCAACTTGGGCGGAGTTGTTGGGGCATCT GTATCCCTCGGCACAAATTACAATTCCAAGGTTCGTCCTCCTGGCATTCGTGGTTTCACATGTATTGACCTTATT TATTGTAGGCCAACGCAGGTACGTTTATCGGTTCGAAATATTGGCTGTGCAATTCTAAACATAAGCACCTCCAGT TGGAAATGGGACATATGTCAGTCGAATTTACCCCTTTATAGAGTATCAGAAGACTAACGTATCGAAAGATTGGGT TTTTGGTCCTTACACTATGTGGGACTATCCTCCCCCTTGTCATGGTAGATCCGAAGAATATGATCAGATCAGATG GAACGAAAGTTACCGTCTCCAAACAACCTTCTTGGAGGACAGAACTCATGAGGCTCCCCCGCGCCATTAGGAAAG ATCCTATGATCATATTGCTGTTCCCTATGTTCCTTGCTTCAAACTGGTTCTACACTTGGCGTATGAATATCACCT TACATCGATATTACTCAACTACTAATGCTCATAACCATAGAATTCACTGACTACAACGGTGCCATCTTCAACATC AGAGCGCGTGCCTTGAACAACGTCGTATACTGGCTGGCACAAATTGTGGGGTCGATTCTCGTCGGATTGGTCCTC GACAGCAAGCGCCTTCGTCGAAGAATCAGGGCCTTCACTGGCTGGGGTATTCTCTTTGCTCTTATATGGGTCGTC CACATCTGGGGCTACTTTTATCAGAGGTGAGTACAAGTCGAGCCAGAAAGAAACGTGACTAATTCAATTGCTGTA CAGGCAATATACCCGCGAGTCACTTAGCAAGACTGATATCAGGATGGATATCTTTGATGCGCCGTACGGAGGAAG AATTATGCTGTATATCATGTGTGGCATTTTGGACGCTACATGGCAAGTAACGACGTATTGGATCATGGGCGCCAT GTCGAACGACGCTTCCACACTAGCATACCTCATTGGATTTTGTGAGCTTCTCCTAATATTCGCAGATAGTCATAA CGCGTTACTGATTGAACCCTAGATAAATCTATCCAATCTGCAGGAGCCGCAGGAGCCTGGGCTGCGGACAGTCGC AAAGAACCGTGAGTTGCCTTTTTCCCCTAGCCTCCATCTGGATTCGTGTCTTGACGCAATTCGACTAGATACATG AACTTATTCGTTTCCACTTGGGTTATTCTCTTGGCTGGCCTCTTCTTTGCTCTGCCGATGATTTACTGGCGTGTC ACTGATCAGACAGATACTACTCCGGATGATAACACGTGAGTAATGGTCATTCATCAGAAAATACATCACACTGAA GTATAAATCAATGCAGGCCATCCGATTCGAAGGCGGACGCTTGA |