© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|011570 |
| Gene name | |
| Location | scaffold_1:2728082..2729692 |
| Strand | + |
| Gene length (bp) | 1610 |
| Transcript length (bp) | 1434 |
| Coding sequence length (bp) | 1434 |
| Protein length (aa) | 478 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01585 | G-patch | G-patch domain | 4.8E-11 | 86 | 127 |
| PF12656 | G-patch_2 | G-patch domain | 2.3E-06 | 89 | 130 |
| PF12171 | zf-C2H2_jaz | Zinc-finger double-stranded RNA-binding | 1.3E-05 | 183 | 207 |
| PF12874 | zf-met | Zinc-finger of C2H2 type | 3.6E-04 | 183 | 204 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|A2A6A1|GPTC8_MOUSE | G patch domain-containing protein 8 OS=Mus musculus GN=Gpatch8 PE=1 SV=1 | 60 | 305 | 1.0E-33 |
| sp|Q9UKJ3|GPTC8_HUMAN | G patch domain-containing protein 8 OS=Homo sapiens GN=GPATCH8 PE=1 SV=2 | 60 | 298 | 2.0E-32 |
| sp|Q6DF57|GPT11_XENTR | G patch domain-containing protein 11 OS=Xenopus tropicalis GN=gpatch11 PE=2 SV=1 | 83 | 191 | 4.0E-11 |
| sp|Q2KI19|GPT11_BOVIN | G patch domain-containing protein 11 OS=Bos taurus GN=GPATCH11 PE=2 SV=2 | 77 | 162 | 6.0E-10 |
| sp|Q3UFS4|GPT11_MOUSE | G patch domain-containing protein 11 OS=Mus musculus GN=Gpatch11 PE=1 SV=2 | 77 | 144 | 1.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|A2A6A1|GPTC8_MOUSE | G patch domain-containing protein 8 OS=Mus musculus GN=Gpatch8 PE=1 SV=1 | 60 | 305 | 1.0E-33 |
| sp|Q9UKJ3|GPTC8_HUMAN | G patch domain-containing protein 8 OS=Homo sapiens GN=GPATCH8 PE=1 SV=2 | 60 | 298 | 2.0E-32 |
| sp|Q6DF57|GPT11_XENTR | G patch domain-containing protein 11 OS=Xenopus tropicalis GN=gpatch11 PE=2 SV=1 | 83 | 191 | 4.0E-11 |
| sp|Q2KI19|GPT11_BOVIN | G patch domain-containing protein 11 OS=Bos taurus GN=GPATCH11 PE=2 SV=2 | 77 | 162 | 6.0E-10 |
| sp|Q3UFS4|GPT11_MOUSE | G patch domain-containing protein 11 OS=Mus musculus GN=Gpatch11 PE=1 SV=2 | 77 | 144 | 1.0E-09 |
| sp|Q6DGZ0|GPT11_DANRE | G patch domain-containing protein 11 OS=Danio rerio GN=gpatch11 PE=2 SV=1 | 79 | 144 | 2.0E-09 |
| sp|Q8N954|GPT11_HUMAN | G patch domain-containing protein 11 OS=Homo sapiens GN=GPATCH11 PE=1 SV=3 | 77 | 162 | 8.0E-09 |
| sp|A2AKY4|Z804A_MOUSE | Zinc finger protein 804A OS=Mus musculus GN=Znf804a PE=2 SV=1 | 162 | 266 | 2.0E-08 |
| sp|Q7Z570|Z804A_HUMAN | Zinc finger protein 804A OS=Homo sapiens GN=ZNF804A PE=1 SV=3 | 162 | 266 | 3.0E-08 |
| sp|A4D1E1|Z804B_HUMAN | Zinc finger protein 804B OS=Homo sapiens GN=ZNF804B PE=2 SV=2 | 182 | 267 | 5.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003676 | nucleic acid binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 58 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|011570 MSESSIARRNAVPMARTQDTDVTLKRKRQDDEMDEDDDDVSPVSRSPSPDSGAMDVDPSDHISKYDEFIHKPVHE TITVESKIKSTNKGFALLAKMGWSEGQPVGLSGDGRVDPIPFEIKYDSTGLGKTTQDVRMIEETVSQRRGLDSER QTRETEEQRRAREDTVARQAAVKDEVSNAIRSFYCMLCDKQFQNVAQYDEHTNSYAHHHKARFKDMQANARPKAQ EEIDRRKEKERKREERELRKIAAAAGIKVPKVTPAVPAPTPAAVTPVGVSAESDGTPSEKKRGWASVGDTSAAVP TSTGFKKSGWATVGSSSTPQPSQTSDQAKSSNWAPAPSASIPPQPPMTSRHTSHTPSFRTGGWTSLDTTSDTVNP PPPPPPAAHSYPYSAPPMQPSSPPPPPPPSSSHTVSGGRGGWSTSSATHASATPRQSEGLEIPTPTPDSIMSAPT PKPLSNPPAVPVRSGWQKFQAKNNKRK* |
| Coding | >AgabiH97|011570 ATGTCCGAGAGCTCAATAGCTCGCCGGAACGCCGTACCCATGGCTCGGACTCAGGATACAGATGTCACCCTAAAG CGCAAGAGGCAGGACGACGAGATGGACGAAGATGACGACGATGTATCTCCCGTCTCGCGCTCTCCCTCTCCCGAT AGCGGAGCTATGGACGTTGATCCAAGCGACCATATCTCCAAGTATGATGAATTCATTCACAAACCCGTCCACGAG ACTATCACAGTCGAAAGCAAGATAAAATCCACCAACAAGGGTTTTGCCCTCCTTGCCAAGATGGGTTGGTCGGAG GGTCAGCCGGTCGGACTCTCGGGAGATGGTCGTGTGGATCCTATCCCATTTGAAATCAAGTACGACTCCACTGGG CTTGGTAAAACAACACAGGATGTCCGTATGATTGAAGAAACTGTCTCTCAACGTCGCGGGCTTGATTCTGAACGC CAAACGAGAGAAACAGAGGAACAGCGGAGGGCTCGTGAGGATACTGTCGCGCGCCAAGCGGCGGTCAAAGATGAG GTATCCAACGCAATCCGCTCTTTTTACTGCATGCTTTGCGACAAACAATTCCAAAACGTTGCTCAATATGATGAA CACACTAATTCCTATGCGCATCACCACAAGGCCAGATTCAAAGACATGCAAGCCAATGCCAGACCGAAGGCCCAA GAAGAAATCGATAGGCGGAAAGAGAAGGAACGCAAGCGTGAAGAACGCGAACTACGCAAGATCGCAGCCGCAGCC GGTATCAAGGTACCAAAGGTGACTCCGGCGGTGCCTGCGCCTACGCCTGCCGCAGTCACTCCTGTGGGTGTATCC GCCGAATCTGACGGGACTCCGAGCGAAAAGAAAAGAGGTTGGGCATCCGTCGGTGATACCTCTGCAGCGGTTCCT ACATCTACTGGTTTCAAGAAGTCGGGTTGGGCGACTGTTGGCTCGTCGTCAACGCCACAACCTTCACAAACATCT GACCAAGCGAAATCTTCAAATTGGGCGCCAGCGCCATCTGCATCTATACCTCCGCAGCCTCCGATGACTTCGCGT CATACAAGCCATACACCATCTTTTCGAACGGGAGGATGGACCTCACTTGATACCACAAGTGATACTGTCAATCCA CCTCCACCTCCACCACCCGCCGCTCATTCATATCCGTATTCAGCACCACCAATGCAACCGTCCTCGCCACCGCCG CCACCTCCTCCATCGTCATCACACACTGTATCAGGAGGTAGGGGTGGATGGTCAACCTCATCTGCGACACACGCT TCTGCTACTCCACGCCAGTCTGAAGGACTCGAAATCCCTACTCCTACGCCTGACTCCATTATGTCCGCACCTACG CCGAAACCTTTGTCTAATCCGCCCGCGGTGCCCGTACGTTCAGGTTGGCAAAAGTTTCAGGCGAAAAACAATAAA AGAAAATGA |
| Transcript | >AgabiH97|011570 ATGTCCGAGAGCTCAATAGCTCGCCGGAACGCCGTACCCATGGCTCGGACTCAGGATACAGATGTCACCCTAAAG CGCAAGAGGCAGGACGACGAGATGGACGAAGATGACGACGATGTATCTCCCGTCTCGCGCTCTCCCTCTCCCGAT AGCGGAGCTATGGACGTTGATCCAAGCGACCATATCTCCAAGTATGATGAATTCATTCACAAACCCGTCCACGAG ACTATCACAGTCGAAAGCAAGATAAAATCCACCAACAAGGGTTTTGCCCTCCTTGCCAAGATGGGTTGGTCGGAG GGTCAGCCGGTCGGACTCTCGGGAGATGGTCGTGTGGATCCTATCCCATTTGAAATCAAGTACGACTCCACTGGG CTTGGTAAAACAACACAGGATGTCCGTATGATTGAAGAAACTGTCTCTCAACGTCGCGGGCTTGATTCTGAACGC CAAACGAGAGAAACAGAGGAACAGCGGAGGGCTCGTGAGGATACTGTCGCGCGCCAAGCGGCGGTCAAAGATGAG GTATCCAACGCAATCCGCTCTTTTTACTGCATGCTTTGCGACAAACAATTCCAAAACGTTGCTCAATATGATGAA CACACTAATTCCTATGCGCATCACCACAAGGCCAGATTCAAAGACATGCAAGCCAATGCCAGACCGAAGGCCCAA GAAGAAATCGATAGGCGGAAAGAGAAGGAACGCAAGCGTGAAGAACGCGAACTACGCAAGATCGCAGCCGCAGCC GGTATCAAGGTACCAAAGGTGACTCCGGCGGTGCCTGCGCCTACGCCTGCCGCAGTCACTCCTGTGGGTGTATCC GCCGAATCTGACGGGACTCCGAGCGAAAAGAAAAGAGGTTGGGCATCCGTCGGTGATACCTCTGCAGCGGTTCCT ACATCTACTGGTTTCAAGAAGTCGGGTTGGGCGACTGTTGGCTCGTCGTCAACGCCACAACCTTCACAAACATCT GACCAAGCGAAATCTTCAAATTGGGCGCCAGCGCCATCTGCATCTATACCTCCGCAGCCTCCGATGACTTCGCGT CATACAAGCCATACACCATCTTTTCGAACGGGAGGATGGACCTCACTTGATACCACAAGTGATACTGTCAATCCA CCTCCACCTCCACCACCCGCCGCTCATTCATATCCGTATTCAGCACCACCAATGCAACCGTCCTCGCCACCGCCG CCACCTCCTCCATCGTCATCACACACTGTATCAGGAGGTAGGGGTGGATGGTCAACCTCATCTGCGACACACGCT TCTGCTACTCCACGCCAGTCTGAAGGACTCGAAATCCCTACTCCTACGCCTGACTCCATTATGTCCGCACCTACG CCGAAACCTTTGTCTAATCCGCCCGCGGTGCCCGTACGTTCAGGTTGGCAAAAGTTTCAGGCGAAAAACAATAAA AGAAAATGA |
| Gene | >AgabiH97|011570 ATGTCCGAGAGCTCAATAGCTCGCCGGAACGCCGTACCCATGGCTCGGACTCAGGATACAGATGTCACCCTAAAG GTACTCTACCAGCTCTTTTTCTCCCCGGCATATCCCCTCCTACCCTGTTCCCATATCCCAGCGCAAGAGGCAGGA CGACGAGATGGACGAAGATGACGACGATGTATCTCCCGTCTCGCGCTCTCCCTCTCCCGATAGCGGAGCTATGGA CGTTGATCCAAGCGACCATATCTCCAAGTATGATGAATTCATTCACAAACCCGTCCACGAGACTATCACAGTCGA AAGCAAGATAAAATCCACCAACAAGGGTTTTGCCCTCCTTGCCAAGATGGGTTGGTCGGAGGGTCAGCCGGTCGG ACTCTCGGGAGATGGCACGTCACCATTAATTATTTCATCTTGGTCCTTGTTTAATCATACAATATGAAGGTCGTG TGGATCCTATCCCATTTGAAATCAAGTACGACTCCACTGGGCTTGGTAAAACAACACAGGATGTCCGTATGATTG AAGAAACTGTCTCTCAACGTCGCGGGCTTGATTCTGAACGCCAAACGAGAGAAACAGAGGAACAGCGGAGGGCTC GTGAGGTATACCTTCCTTGTCCTATGTACAGTCTAAAATGATCATCTGATCCTATAATAAACCAGGATACTGTCG CGCGCCAAGCGGCGGTCAAAGATGAGGTATCCAACGCAATCCGCTCTTTTTACTGCATGCTTTGCGACAAACAAT TCCAAAACGTTGCTCAATATGATGAACACACTAATTCCTATGCGCATCACCACAAGGCCAGATTCAAAGACATGC AAGCCAATGCCAGACCGAAGGCCCAAGAAGAAATCGATAGGCGGAAAGAGAAGGAACGCAAGCGTGAAGAACGCG AACTACGCAAGATCGCAGCCGCAGCCGGTATCAAGGTACCAAAGGTGACTCCGGCGGTGCCTGCGCCTACGCCTG CCGCAGTCACTCCTGTGGGTGTATCCGCCGAATCTGACGGGACTCCGAGCGAAAAGAAAAGAGGTTGGGCATCCG TCGGTGATACCTCTGCAGCGGTTCCTACATCTACTGGTTTCAAGAAGTCGGGTTGGGCGACTGTTGGCTCGTCGT CAACGCCACAACCTTCACAAACATCTGACCAAGCGAAATCTTCAAATTGGGCGCCAGCGCCATCTGCATCTATAC CTCCGCAGCCTCCGATGACTTCGCGTCATACAAGCCATACACCATCTTTTCGAACGGGAGGATGGACCTCACTTG ATACCACAAGTGATACTGTCAATCCACCTCCACCTCCACCACCCGCCGCTCATTCATATCCGTATTCAGCACCAC CAATGCAACCGTCCTCGCCACCGCCGCCACCTCCTCCATCGTCATCACACACTGTATCAGGAGGTAGGGGTGGAT GGTCAACCTCATCTGCGACACACGCTTCTGCTACTCCACGCCAGTCTGAAGGACTCGAAATCCCTACTCCTACGC CTGACTCCATTATGTCCGCACCTACGCCGAAACCTTTGTCTAATCCGCCCGCGGTGCCCGTACGTTCAGGTTGGC AAAAGTTTCAGGCGAAAAACAATAAAAGAAAATGA |