Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|011140
Gene name
Locationscaffold_1:2631940..2633975
Strand+
Gene length (bp)2035
Transcript length (bp)1212
Coding sequence length (bp)1212
Protein length (aa) 404

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 4.9E-07 181 221
PF13923 zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 1.9E-06 181 221
PF13445 zf-RING_UBOX RING-type zinc-finger 8.8E-07 181 219
PF13639 zf-RING_2 Ring finger domain 3.1E-06 181 222

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q4KLY4|RING2_RAT E3 ubiquitin-protein ligase RING2 OS=Rattus norvegicus GN=Rnf2 PE=2 SV=1 178 243 4.0E-08
sp|Q99496|RING2_HUMAN E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1 SV=1 178 243 4.0E-08
sp|Q9CQJ4|RING2_MOUSE E3 ubiquitin-protein ligase RING2 OS=Mus musculus GN=Rnf2 PE=1 SV=1 178 243 4.0E-08
sp|Q5R9J5|RING2_PONAB E3 ubiquitin-protein ligase RING2 OS=Pongo abelii GN=RNF2 PE=2 SV=1 178 243 4.0E-08
sp|Q803I4|RING2_DANRE E3 ubiquitin-protein ligase RING2 OS=Danio rerio GN=rnf2 PE=2 SV=1 178 243 5.0E-08
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Swissprot ID Swissprot Description Start End E-value
sp|Q4KLY4|RING2_RAT E3 ubiquitin-protein ligase RING2 OS=Rattus norvegicus GN=Rnf2 PE=2 SV=1 178 243 4.0E-08
sp|Q99496|RING2_HUMAN E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1 SV=1 178 243 4.0E-08
sp|Q9CQJ4|RING2_MOUSE E3 ubiquitin-protein ligase RING2 OS=Mus musculus GN=Rnf2 PE=1 SV=1 178 243 4.0E-08
sp|Q5R9J5|RING2_PONAB E3 ubiquitin-protein ligase RING2 OS=Pongo abelii GN=RNF2 PE=2 SV=1 178 243 4.0E-08
sp|Q803I4|RING2_DANRE E3 ubiquitin-protein ligase RING2 OS=Danio rerio GN=rnf2 PE=2 SV=1 178 243 5.0E-08
sp|Q66J69|RNG2A_XENLA E3 ubiquitin-protein ligase RING2-A OS=Xenopus laevis GN=rnf2-a PE=2 SV=1 178 243 1.0E-07
sp|Q7ZWM8|RNG2B_XENLA E3 ubiquitin-protein ligase RING2-B OS=Xenopus laevis GN=rnf2-b PE=2 SV=2 178 243 1.0E-07
sp|A2T6X5|RING1_PANTR E3 ubiquitin-protein ligase RING1 OS=Pan troglodytes GN=RING1 PE=3 SV=1 178 243 1.0E-07
sp|A1YFY1|RING1_PANPA E3 ubiquitin-protein ligase RING1 OS=Pan paniscus GN=RING1 PE=3 SV=1 178 243 1.0E-07
sp|Q8WMN5|RING1_MACMU E3 ubiquitin-protein ligase RING1 OS=Macaca mulatta GN=RING1 PE=3 SV=1 178 243 1.0E-07
sp|A1YER5|RING1_GORGO E3 ubiquitin-protein ligase RING1 OS=Gorilla gorilla gorilla GN=RING1 PE=3 SV=1 178 243 1.0E-07
sp|O35730|RING1_MOUSE E3 ubiquitin-protein ligase RING1 OS=Mus musculus GN=Ring1 PE=1 SV=2 178 243 1.0E-07
sp|Q06587|RING1_HUMAN E3 ubiquitin-protein ligase RING1 OS=Homo sapiens GN=RING1 PE=1 SV=2 178 243 1.0E-07
sp|Q5TJF3|RING1_CANLF E3 ubiquitin-protein ligase RING1 OS=Canis lupus familiaris GN=RING1 PE=3 SV=2 178 243 2.0E-07
sp|Q6MGB6|RING1_RAT E3 ubiquitin-protein ligase RING1 OS=Rattus norvegicus GN=Ring1 PE=2 SV=2 178 243 2.0E-07
sp|Q9VB08|RING1_DROME E3 ubiquitin-protein ligase RING1 OS=Drosophila melanogaster GN=Sce PE=1 SV=1 178 243 5.0E-06
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GO

GO Term Description Terminal node
GO:0046872 metal ion binding Yes
GO:0003674 molecular_function No
GO:0043167 ion binding No
GO:0005488 binding No
GO:0043169 cation binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 45 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|011140
MSEDEFDNLPDLFSGVTDAEWSRMLDAPGESSSIRHPHGVSPSRSTVSTDYGDEHFVNPEALAEIDRIETSLSSF
GSTASARRVGEVISTASGHTTHHQDSLRPPTNDSSQSRYLPNADHCHAHTLVRTSVACLTEAPEKQATGKRSRLE
DAESTVVKNGIVRAYDKIQYALDGYGEELCCPICCDLFVATHLGNPCGHSYCGDCAWQWVNKNDRTECPICRTQL
VGEAPLIPNITLDSLIEKHIELLISAGDIDWLPQGSKYKDRASRKAKWKASVDARSKALKTKRKRKEVVFISSDD
EDPYIEHSSQETGQADTEMNSLHVRLGYLYREGIDNALTFGIGSLPCIWSMSTSYQLTDFTKKSHTMSKMNFGAG
CYVCDRLSSFKHESCVSVQIPEDVYCCK*
Coding >AgabiH97|011140
ATGTCTGAAGACGAATTCGATAATCTTCCAGATCTATTTTCCGGTGTCACTGATGCTGAGTGGTCAAGAATGCTG
GATGCTCCGGGAGAATCTTCTTCAATCCGACACCCTCATGGCGTCAGTCCCTCGAGGTCAACCGTATCGACGGAT
TATGGAGATGAGCACTTCGTGAATCCGGAAGCTCTAGCCGAAATTGATCGTATAGAAACGTCCTTATCAAGTTTT
GGCAGTACGGCATCTGCAAGGCGTGTTGGAGAAGTGATTTCAACGGCAAGTGGGCACACCACACACCATCAAGAC
TCATTGAGACCTCCGACCAATGATTCGTCGCAATCGCGTTATCTTCCGAATGCAGATCACTGCCATGCACATACG
CTGGTACGAACTTCTGTCGCATGTCTGACTGAAGCCCCGGAAAAACAAGCAACCGGAAAAAGGTCACGACTTGAA
GACGCCGAGAGTACAGTAGTCAAGAATGGAATAGTGCGAGCTTATGACAAGATTCAATATGCTCTTGATGGTTAC
GGAGAGGAATTATGTTGTCCTATTTGTTGTGACTTGTTCGTGGCCACTCACCTTGGGAATCCATGTGGCCACAGC
TATTGTGGCGATTGTGCGTGGCAGTGGGTCAACAAAAATGACCGTACTGAGTGTCCCATTTGCCGGACTCAGCTA
GTAGGAGAAGCACCGCTTATTCCAAATATAACTTTGGATAGCCTTATCGAAAAGCATATCGAGCTTCTCATTTCG
GCAGGAGACATTGACTGGCTGCCTCAAGGTTCTAAATATAAAGACCGGGCTTCCCGAAAAGCGAAATGGAAAGCC
TCCGTTGACGCTAGGTCGAAGGCCCTGAAAACGAAGCGAAAACGAAAGGAGGTTGTTTTTATTTCAAGTGATGAT
GAAGATCCATACATTGAGCATTCATCCCAGGAAACTGGACAGGCAGATACGGAGATGAATTCGCTGCATGTTCGT
CTTGGATATTTATATCGGGAGGGTATTGACAACGCCCTCACTTTTGGAATTGGATCCTTGCCCTGCATTTGGAGC
ATGTCCACCTCTTATCAGCTAACAGATTTTACTAAAAAAAGTCACACGATGTCCAAAATGAATTTTGGGGCAGGA
TGTTATGTATGCGATCGACTATCAAGCTTCAAACATGAATCATGTGTATCCGTCCAGATACCTGAGGATGTTTAT
TGCTGCAAATAG
Transcript >AgabiH97|011140
ATGTCTGAAGACGAATTCGATAATCTTCCAGATCTATTTTCCGGTGTCACTGATGCTGAGTGGTCAAGAATGCTG
GATGCTCCGGGAGAATCTTCTTCAATCCGACACCCTCATGGCGTCAGTCCCTCGAGGTCAACCGTATCGACGGAT
TATGGAGATGAGCACTTCGTGAATCCGGAAGCTCTAGCCGAAATTGATCGTATAGAAACGTCCTTATCAAGTTTT
GGCAGTACGGCATCTGCAAGGCGTGTTGGAGAAGTGATTTCAACGGCAAGTGGGCACACCACACACCATCAAGAC
TCATTGAGACCTCCGACCAATGATTCGTCGCAATCGCGTTATCTTCCGAATGCAGATCACTGCCATGCACATACG
CTGGTACGAACTTCTGTCGCATGTCTGACTGAAGCCCCGGAAAAACAAGCAACCGGAAAAAGGTCACGACTTGAA
GACGCCGAGAGTACAGTAGTCAAGAATGGAATAGTGCGAGCTTATGACAAGATTCAATATGCTCTTGATGGTTAC
GGAGAGGAATTATGTTGTCCTATTTGTTGTGACTTGTTCGTGGCCACTCACCTTGGGAATCCATGTGGCCACAGC
TATTGTGGCGATTGTGCGTGGCAGTGGGTCAACAAAAATGACCGTACTGAGTGTCCCATTTGCCGGACTCAGCTA
GTAGGAGAAGCACCGCTTATTCCAAATATAACTTTGGATAGCCTTATCGAAAAGCATATCGAGCTTCTCATTTCG
GCAGGAGACATTGACTGGCTGCCTCAAGGTTCTAAATATAAAGACCGGGCTTCCCGAAAAGCGAAATGGAAAGCC
TCCGTTGACGCTAGGTCGAAGGCCCTGAAAACGAAGCGAAAACGAAAGGAGGTTGTTTTTATTTCAAGTGATGAT
GAAGATCCATACATTGAGCATTCATCCCAGGAAACTGGACAGGCAGATACGGAGATGAATTCGCTGCATGTTCGT
CTTGGATATTTATATCGGGAGGGTATTGACAACGCCCTCACTTTTGGAATTGGATCCTTGCCCTGCATTTGGAGC
ATGTCCACCTCTTATCAGCTAACAGATTTTACTAAAAAAAGTCACACGATGTCCAAAATGAATTTTGGGGCAGGA
TGTTATGTATGCGATCGACTATCAAGCTTCAAACATGAATCATGTGTATCCGTCCAGATACCTGAGGATGTTTAT
TGCTGCAAATAG
Gene >AgabiH97|011140
ATGTCTGAAGACGAATTCGATAATCTTCCAGATCTATTTTCCGGTGTCACTGATGCTGAGTGGTCAAGAATGCTG
GATGCTCCGGGAGAATCTTCTTCAATCCGACACCCTCATGGCGTCAGTCCCTCGAGGTCAACCGTATCGACGGAT
TATGGAGATGAGCACTTCGTGAATCCGGAAGCTCTAGCCGAAATTGATCGTATAGAAACGTCCTTATCAAGTTTT
GGCAGTACGGCATCTGCAAGGCGTGTTGGAGGTTGGTTTTCCACACCTCCACTCTCTATGGTATCTTAATGAACA
TAGAAGTGATTTCAACGGCAAGTGGGCACACCACACACCATCAAGACTCATTGAGTAAGTTGACAAATTTTGATA
CCTGTTTCGGTTTTTCACATGTGAAGTTAGGACGTAAATCCACCGCTCTTTACGCATGCATTAATAGTGAAGGTG
GCAATTAGCTCCGACCAATGATTCGTCGCAATCGCGTTATCTTCCGAATGCAGATCACTGCCATGCACATACGCT
GGTACGAACTTCTGTCGCATGTCTGACTGAAGCCCCGGAAAAACAAGGTAAGCCAGGCGGTTATATTTGGTTCCG
CGGTAAGATGTTAACCAAGCCTTCGTCAGCAACCGGAAAAAGGTCACGACTTGAAGACGCCGAGAGTACAGTAGT
CAAGAATGGAATAGTGCGAGCTTATGACAAGATTCAATATGCTCTTGATGGTTACGGAGAGGAATTATGTTGTCC
TATGTGAGTAATCAGTGGCCACTTGCACACCGAAATGATAGTTCTGACAATGTGCGGCTAAGTTGTTGTGACTTG
TTGTAAGTCAATCATTCGGTCTCCGTAGAGCCAGGTTTAATGGATGGATATGAAGCGTGGCCACTCACCTTGGGA
ATCCATGTGGCCACAGCTATTGTGGCGATTGTGCGTGGCAGTGGGTCAACAAAAATGTTTGTACCATCATTAGAC
ACGTGCTGTGATTATGCTCACTCGCATCAGGACCGTACTGAGTGTCCCATTTGCCGGACTCAGCTAGTAGGAGAA
GCACCGCTTATTCCAAATATAACTTTGGATAGCCTTATCGAAAAGCATATCGAGCTTCTCATTTCGGCAGGAGAC
ATTGACTGGCTGCCTCAAGGTTCTAAATATAAAGACCGGGCTTCCCGAAAAGCGTAAGCCTTTCATGTGAAGTAT
TAGTTGAAAGTAAGCTCACGCGGGGACGTTCGTTTGTTCGCCTAGGAAATGGAAAGCCTCCGTTGACGCTAGGTC
GAAGGCCCTGAAAACGAAGCGAAAACGAAAGGTGAATGTGTTTCCGTAATGATCGACGTGATCTTTCTGAATCAT
TTGTAGGAGGTTGTTTTTATTTCAAGTGATGATGAAGATCCATACATTGAGCATTCATCCCAGGAAACTGGACAG
GTTGGAATGGTCAGAGCTCGTTCCAATCGTCGACGCCGAAATTCGAGGCAGATACGGAGATGAATTCGCTGCATG
TTCGTCTTGGATATTTATATCGGGAGGGTATTGACAACGCCCTCACGTACGTCAACACCGTCTCGTGTTTATCAA
ACGGGTCCAATTGGTAACCGCAACGCCACAGTTTTGGAATTGGATCCTTGCCCTGCATTTGGAGCATGTCCACCT
CTTATCGTGAGATCATCTATGCTTCTACTACTTGTCTAGGAAGCGTCTGACAGACACTCTGGATGTCCCTGCAAT
CAATCACCCATCTGACTTCCAAGAGCTAACAGATTTTACTAAAAAAAGTCACACGATGTCCAAAATGAATGTGAA
GGCTTCTGTCGAATGAAACTGAGCTTCAGTAGAGGGGGCCACTCGGGGGCACAGTGGCTGATTTACGTGACGGTC
AAATCATAGTTTGGGGCAGGATGTTATGTATGCGATCGACTATCAAGCTTCAAACATGAATCATGTATTTCGTTC
TTGGAATCATATCCTTCAGTGGCTAACGAGCGGCGTTGCAGGTGTATCCGTCCAGATACCTGAGGATGTTTATTG
CTGCAAATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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