© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|011120 |
| Gene name | |
| Location | scaffold_1:2628111..2629952 |
| Strand | - |
| Gene length (bp) | 1841 |
| Transcript length (bp) | 1305 |
| Coding sequence length (bp) | 1305 |
| Protein length (aa) | 435 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01612 | DNA_pol_A_exo1 | 3'-5' exonuclease | 1.1E-12 | 133 | 306 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O09053|WRN_MOUSE | Werner syndrome ATP-dependent helicase homolog OS=Mus musculus GN=Wrn PE=1 SV=3 | 147 | 323 | 7.0E-17 |
| sp|Q14191|WRN_HUMAN | Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2 | 152 | 335 | 7.0E-17 |
| sp|O93530|WRN_XENLA | Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis GN=wrn PE=2 SV=1 | 148 | 310 | 1.0E-15 |
| sp|Q84LH3|WEX_ARATH | Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX PE=1 SV=1 | 146 | 308 | 1.0E-12 |
| sp|Q9NVH0|EXD2_HUMAN | Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens GN=EXD2 PE=1 SV=2 | 122 | 306 | 7.0E-08 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O09053|WRN_MOUSE | Werner syndrome ATP-dependent helicase homolog OS=Mus musculus GN=Wrn PE=1 SV=3 | 147 | 323 | 7.0E-17 |
| sp|Q14191|WRN_HUMAN | Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2 | 152 | 335 | 7.0E-17 |
| sp|O93530|WRN_XENLA | Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis GN=wrn PE=2 SV=1 | 148 | 310 | 1.0E-15 |
| sp|Q84LH3|WEX_ARATH | Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX PE=1 SV=1 | 146 | 308 | 1.0E-12 |
| sp|Q9NVH0|EXD2_HUMAN | Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens GN=EXD2 PE=1 SV=2 | 122 | 306 | 7.0E-08 |
| sp|B4PLB3|WRNXO_DROYA | Werner Syndrome-like exonuclease OS=Drosophila yakuba GN=WRNexo PE=3 SV=1 | 154 | 313 | 1.0E-06 |
| sp|B4N9D3|WRNXO_DROWI | Werner Syndrome-like exonuclease OS=Drosophila willistoni GN=WRNexo PE=3 SV=2 | 154 | 309 | 3.0E-06 |
| sp|Q9VE86|WRNXO_DROME | Werner Syndrome-like exonuclease OS=Drosophila melanogaster GN=WRNexo PE=1 SV=2 | 154 | 313 | 4.0E-06 |
| sp|B4I298|WRNXO_DROSE | Werner Syndrome-like exonuclease OS=Drosophila sechellia GN=WRNexo PE=3 SV=2 | 154 | 313 | 4.0E-06 |
| sp|B4QUF6|WRNXO_DROSI | Werner Syndrome-like exonuclease OS=Drosophila simulans GN=WRNexo PE=3 SV=1 | 154 | 313 | 4.0E-06 |
| sp|B4G5C9|WRNXO_DROPE | Werner Syndrome-like exonuclease OS=Drosophila persimilis GN=WRNexo PE=3 SV=2 | 154 | 314 | 4.0E-06 |
| sp|Q299L3|WRNXO_DROPS | Werner Syndrome-like exonuclease OS=Drosophila pseudoobscura pseudoobscura GN=WRNexo PE=3 SV=2 | 154 | 314 | 5.0E-06 |
| sp|Q5UQM4|YR431_MIMIV | Putative 3'-5' exonuclease R431 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R431 PE=3 SV=1 | 143 | 307 | 5.0E-06 |
| sp|B3NZ68|WRNXO_DROER | Werner Syndrome-like exonuclease OS=Drosophila erecta GN=WRNexo PE=3 SV=1 | 154 | 314 | 6.0E-06 |
| sp|B4K934|WRNXO_DROMO | Werner Syndrome-like exonuclease OS=Drosophila mojavensis GN=WRNexo PE=3 SV=1 | 154 | 305 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003676 | nucleic acid binding | Yes |
| GO:0008408 | 3'-5' exonuclease activity | Yes |
| GO:0006139 | nucleobase-containing compound metabolic process | Yes |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0016787 | hydrolase activity | No |
| GO:0005488 | binding | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0008152 | metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0004527 | exonuclease activity | No |
| GO:0003674 | molecular_function | No |
| GO:0004518 | nuclease activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0003824 | catalytic activity | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|011120 MRGFECRPDTSPTSSASNYSLPETLTDDIFETSPHQIMGCGRSLCRCAPKSIYYHHLTQGIQSAALHATGQRKQH RYPPSILPVMTDLPISNACPSSFAGLVIPIASQPPTDKPPAPTILYSWREIHPNARFHYIRQHEEANNALERLEF GVYGFDIEWKPTFRKGQPENPVSLIQTANHEVILLLQVSAMREFPSKSHEFLVNPNFGKTGAGIQGDTKKLYKDC RADVRNCVDLSLLARTVDNAEWKGRYNDPLGLARMTAAYKDRKLVKGKITRSNWENLLTEPQQEYAANDAHAGYV IYMRLMTLEVASVIYLDQRGNHLTPITILALHHHLENRSRYKAYLRMKIQVVITLLYPPLVRVLTQGISKEPRGN NSTMHLQPSLSQMPTQVNSRLFRVSKRSKTSSSQPAELRRPIQISYIKIFRFLAKTHLR* |
| Coding | >AgabiH97|011120 ATGCGCGGTTTCGAGTGCCGACCGGACACCAGCCCGACCTCCAGCGCCTCGAACTACTCACTTCCGGAGACTCTG ACGGATGATATTTTTGAAACATCTCCCCATCAAATCATGGGCTGTGGTCGTTCCCTATGTCGTTGCGCCCCTAAA TCCATTTATTATCATCACTTGACACAAGGAATTCAGTCGGCCGCTTTACATGCGACCGGACAGCGTAAACAACAT CGTTATCCACCTTCCATCCTACCTGTAATGACAGACCTGCCCATATCGAATGCGTGTCCCAGTAGCTTTGCAGGC CTCGTCATTCCTATCGCTTCCCAACCGCCTACGGATAAGCCTCCTGCACCGACCATCTTATATTCCTGGCGTGAA ATACACCCGAATGCACGATTCCATTATATACGTCAACATGAGGAAGCCAACAATGCCCTCGAGCGCCTTGAATTC GGTGTCTACGGATTTGATATCGAATGGAAACCAACCTTCAGAAAAGGTCAACCTGAAAATCCCGTTTCCCTAATT CAAACCGCAAATCACGAGGTCATACTCCTTCTACAAGTCAGCGCAATGCGAGAATTTCCATCAAAATCGCACGAA TTCTTAGTAAATCCCAATTTCGGCAAGACTGGAGCAGGAATACAAGGCGACACGAAAAAGTTGTACAAAGATTGC CGAGCCGACGTTCGTAACTGCGTGGACCTTTCTCTTCTTGCCCGAACAGTCGATAACGCTGAATGGAAAGGGAGA TATAACGATCCGTTGGGGCTTGCTCGAATGACTGCCGCTTACAAAGATCGCAAACTCGTCAAGGGGAAGATCACT CGCAGTAACTGGGAAAACTTACTGACCGAACCCCAACAGGAATATGCTGCTAATGACGCCCATGCGGGCTATGTA ATCTATATGAGATTGATGACGTTAGAGGTCGCCTCTGTGATCTATCTGGATCAACGTGGCAACCATCTAACCCCG ATTACGATCCTGGCCCTCCACCACCACCTCGAGAACCGAAGCCGCTACAAAGCCTACCTAAGAATGAAAATACAG GTCGTCATAACTTTACTATATCCACCGTTGGTCAGAGTCCTGACACAGGGAATTTCTAAGGAACCTCGTGGAAAC AATTCCACAATGCATCTACAACCGTCTTTGTCTCAAATGCCAACGCAAGTCAACTCGAGGCTATTCCGCGTTTCA AAAAGGTCGAAAACATCATCTTCCCAACCTGCAGAGCTGAGGCGTCCTATTCAAATTTCTTACATAAAGATATTC AGGTTTCTGGCCAAGACTCACCTGAGGTAG |
| Transcript | >AgabiH97|011120 ATGCGCGGTTTCGAGTGCCGACCGGACACCAGCCCGACCTCCAGCGCCTCGAACTACTCACTTCCGGAGACTCTG ACGGATGATATTTTTGAAACATCTCCCCATCAAATCATGGGCTGTGGTCGTTCCCTATGTCGTTGCGCCCCTAAA TCCATTTATTATCATCACTTGACACAAGGAATTCAGTCGGCCGCTTTACATGCGACCGGACAGCGTAAACAACAT CGTTATCCACCTTCCATCCTACCTGTAATGACAGACCTGCCCATATCGAATGCGTGTCCCAGTAGCTTTGCAGGC CTCGTCATTCCTATCGCTTCCCAACCGCCTACGGATAAGCCTCCTGCACCGACCATCTTATATTCCTGGCGTGAA ATACACCCGAATGCACGATTCCATTATATACGTCAACATGAGGAAGCCAACAATGCCCTCGAGCGCCTTGAATTC GGTGTCTACGGATTTGATATCGAATGGAAACCAACCTTCAGAAAAGGTCAACCTGAAAATCCCGTTTCCCTAATT CAAACCGCAAATCACGAGGTCATACTCCTTCTACAAGTCAGCGCAATGCGAGAATTTCCATCAAAATCGCACGAA TTCTTAGTAAATCCCAATTTCGGCAAGACTGGAGCAGGAATACAAGGCGACACGAAAAAGTTGTACAAAGATTGC CGAGCCGACGTTCGTAACTGCGTGGACCTTTCTCTTCTTGCCCGAACAGTCGATAACGCTGAATGGAAAGGGAGA TATAACGATCCGTTGGGGCTTGCTCGAATGACTGCCGCTTACAAAGATCGCAAACTCGTCAAGGGGAAGATCACT CGCAGTAACTGGGAAAACTTACTGACCGAACCCCAACAGGAATATGCTGCTAATGACGCCCATGCGGGCTATGTA ATCTATATGAGATTGATGACGTTAGAGGTCGCCTCTGTGATCTATCTGGATCAACGTGGCAACCATCTAACCCCG ATTACGATCCTGGCCCTCCACCACCACCTCGAGAACCGAAGCCGCTACAAAGCCTACCTAAGAATGAAAATACAG GTCGTCATAACTTTACTATATCCACCGTTGGTCAGAGTCCTGACACAGGGAATTTCTAAGGAACCTCGTGGAAAC AATTCCACAATGCATCTACAACCGTCTTTGTCTCAAATGCCAACGCAAGTCAACTCGAGGCTATTCCGCGTTTCA AAAAGGTCGAAAACATCATCTTCCCAACCTGCAGAGCTGAGGCGTCCTATTCAAATTTCTTACATAAAGATATTC AGGTTTCTGGCCAAGACTCACCTGAGGTAG |
| Gene | >AgabiH97|011120 ATGCGCGGTTTCGAGTGCCGACCGGACACCAGCCCGACCTCCAGCGCCTCGAACTACTCACTTCCGGAGACTCTG ACGGATGATATTTTTGAAACATCTCCCCATCAAATCATGGGCTGTGGTCGTTCCCTATGTCGTTGCGGTCCGTAA ACAGCTTTTCTCCTTGTCTTAGCCTCGCTAGTTGTCAATTAGCCCCTAAATCCATTTATTATCATCACTTGACAC GTCGGTCTTCTTTCCCTTTGCCAAGCTTATTGGCACCATTTGCCTCCATGGCTGATTTTCCTGTGCTTATTTTTA GAAGGAATTCAGTCGGCCGCTTTACATGCGACCGGACAGGTTAGATATGACTAATCCAAGAAAAACGTGTCTGCA AAGTACACCGCGGCATGCTGGATTGCCACTGCCTGCCCAGCGTAAACAACATCGTTATCCACCTTCCATCCTACC TGTAATGACAGACCTGCCCATATCGAATGCGTGTCCCAGTAGCTTTGCAGGCCTCGTCATTCCTATCGCTTCCCA ACCGCCTACGGATAAGCCTCCTGCACCGACCATCTTATATTCCTGGCGTGAAATACACCCGAATGCACGATTCCA TTATATACGTCAACATGAGGAAGCCAACAATGCCCTCGAGCGCCTTGAATTCGGTGTCTACGGATTTGATATCGA ATGGAAACCAACCTTCAGAAAAGGTCAACCTGAAAATCCCGTTTCCCTAATTCAAACCGCAAATCACGAGGTCAT ACTCCTTCTACAAGTCAGCGCAATGCGAGGTGAGCCAACATATCACCGAATATCAACCTAGCCTCTTCATCATGT GTTTTCTAGAATTTCCATCAAAATCGCACGAATTCTTAGTAAATCCCAATTTCGGCAAGACTGGAGCAGGAATAC AAGGTCTGATACTGTTAATAATGGATGTGCTTCTTCGTCTTTCGCTCACGTGAACATATTGACAGGCGACACGAA AAAGTTGTACAAAGATTGCCGAGCCGACGTTCGTAACTGCGTGGACCTTTCTCTTCTTGCCCGAACAGTCGATAA CGCTGAATGGAAAGGGAGATATAACGATCCGTTGGGGCTTGCTCGAATGACTGCCGCTTACAAAGATCGCAAACT CGTCAAGGGGAAGATCACTCGCAGTAACTGGGAAAACTTACTGACCGAACCCCAACAGGAATGTTAGTGTTTCAT GTGTTCACAGTTTAAGAGTCGTCACTCATTGGCATCCCTTTCAGATGCTGCTAATGACGCCCATGCGGGCTATGT AATCTATATGAGATTGATGAGTATGATGCCGTCTCTGGTAACGCAACCGCACGCCAGGTGTTATAGTTTCGACAG CGTTAGAGGTCGCCTCTGTGATCTATCTGGATCAACGTGGCAACCATCTAACCCCGATTACGATCCTGGCCCTCC ACCACCACCTCGAGAACCGAAGCCGCTACAAAGCCTACCTAAGAATGAAAATACAGGTCGTCATAACTTTACTAT ATCCACCGTTGGTCAGAGTCCTGACACAGGTTTTGCGCTGTCATTTCAACAACCGTCGTCGAGTTTCTTACAAGG TGCAACCCAACAGGGAATTTCTAAGGAACCTCGTGGAAACAATTCCACAATGCATCTACAACCGTCTTTGTCTCA AATGCCAACGCAAGTCAACTCGAGGCTATTCCGCGTTTCAAAAAGGTCGAAAACATCATCTTCCCAACCTGCAGA GCTGAGGCGTCGTGAGAGTAACAATCCCTAGCTTCGCACTGGCTAATCCCGTTCCAGCTATTCAAATTTCTTACA TAAAGATATTCAGGTTTCTGGCCAAGACTCACCTGAGGTAG |