Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|010460
Gene name
Location	scaffold_1:2467727..2468646
Strand	+
Gene length (bp)	919
Transcript length (bp)	810
Coding sequence length (bp)	810
Protein length (aa)	270

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF10213	MRP-S28	Mitochondrial ribosomal subunit protein	1.9E-21	100	253

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q03976\|RT24_YEAST	37S ribosomal protein S24, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSM24 PE=1 SV=1	67	253	3.0E-12

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|010460 MASSLSRLTRRTLLSHATAPSSPQILSRFFSASSPACARRTKTKLEEDIDMDELMEYLEDPGTNDSPSSSHLMLQ EQRIVRHYLRLIEHEMPHLAALRKPFVPPTSEQPLVVRSIEYVGSKPTIKRSMVVAVDDLPLKDEKALKRLVLLA GPRWTPSPPADAGISKHAEWKHGFVKISCEDFMQPARNLKWISDTLDRLVERANSPAKEDGVWDGLPVDLRHVMA KSKKGKKGDHLRGRVLAKPTLRDFPREWLPKSPTTHEQPSLSSS*
Coding	>AgabiH97\|010460 ATGGCGTCGTCATTATCTCGTCTGACCAGACGCACTCTACTCAGTCATGCTACAGCTCCCTCATCCCCTCAGATA TTGTCTCGCTTTTTCTCTGCCTCTTCTCCTGCTTGTGCTCGCCGTACGAAGACCAAGCTTGAAGAAGATATAGAC ATGGACGAGCTTATGGAGTATCTTGAGGACCCGGGAACGAATGATTCACCTTCGTCGTCGCATTTGATGTTACAG GAACAGCGCATAGTGAGGCATTACTTGCGGTTGATTGAGCATGAGATGCCTCATTTGGCCGCTTTGAGGAAACCT TTTGTGCCGCCGACATCTGAACAACCGCTCGTCGTACGATCCATTGAATATGTGGGTTCAAAGCCTACTATTAAA AGAAGTATGGTCGTGGCTGTCGATGATCTGCCTTTGAAGGATGAAAAGGCATTGAAGAGATTGGTTTTACTCGCT GGTCCGAGATGGACACCAAGTCCTCCTGCAGACGCTGGTATCAGCAAACATGCGGAATGGAAACACGGATTTGTG AAGATTTCTTGTGAAGATTTTATGCAACCTGCTAGGAATCTCAAGTGGATTAGTGATACGTTAGACAGACTAGTA GAGAGAGCTAATAGTCCAGCTAAGGAGGATGGTGTTTGGGATGGTTTACCAGTTGATTTGCGCCATGTTATGGCC AAATCGAAAAAGGGCAAAAAAGGCGATCATTTACGCGGTCGGGTCCTTGCTAAACCCACTCTTCGTGACTTCCCC CGGGAGTGGCTGCCAAAGTCGCCTACAACTCATGAGCAACCATCATTGTCTTCATCCTAA
Transcript	>AgabiH97\|010460 ATGGCGTCGTCATTATCTCGTCTGACCAGACGCACTCTACTCAGTCATGCTACAGCTCCCTCATCCCCTCAGATA TTGTCTCGCTTTTTCTCTGCCTCTTCTCCTGCTTGTGCTCGCCGTACGAAGACCAAGCTTGAAGAAGATATAGAC ATGGACGAGCTTATGGAGTATCTTGAGGACCCGGGAACGAATGATTCACCTTCGTCGTCGCATTTGATGTTACAG GAACAGCGCATAGTGAGGCATTACTTGCGGTTGATTGAGCATGAGATGCCTCATTTGGCCGCTTTGAGGAAACCT TTTGTGCCGCCGACATCTGAACAACCGCTCGTCGTACGATCCATTGAATATGTGGGTTCAAAGCCTACTATTAAA AGAAGTATGGTCGTGGCTGTCGATGATCTGCCTTTGAAGGATGAAAAGGCATTGAAGAGATTGGTTTTACTCGCT GGTCCGAGATGGACACCAAGTCCTCCTGCAGACGCTGGTATCAGCAAACATGCGGAATGGAAACACGGATTTGTG AAGATTTCTTGTGAAGATTTTATGCAACCTGCTAGGAATCTCAAGTGGATTAGTGATACGTTAGACAGACTAGTA GAGAGAGCTAATAGTCCAGCTAAGGAGGATGGTGTTTGGGATGGTTTACCAGTTGATTTGCGCCATGTTATGGCC AAATCGAAAAAGGGCAAAAAAGGCGATCATTTACGCGGTCGGGTCCTTGCTAAACCCACTCTTCGTGACTTCCCC CGGGAGTGGCTGCCAAAGTCGCCTACAACTCATGAGCAACCATCATTGTCTTCATCCTAA
Gene	>AgabiH97\|010460 ATGGCGTCGTCATTATCTCGTCTGACCAGACGCACTCTACTCAGTCATGCTACAGCTCCCTCATCCCCTCAGATA TTGTCTCGCTTTTTCTCTGCCTCTTCTCCTGCTTGTGCTCGCCGTACGAAGACCAAGCTTGAAGAAGATATAGAC ATGGACGAGCTTATGGAGTATCTTGAGGACCCGGGAACGAATGATTCACCTTCGTCGTCGCATTTGATGTTACAG GAACAGCGCATAGTGAGGCATTACTTGCGGTTGATTGAGCATGAGATGCCTCATTTGGCCGGTACGTTTATTTAT TTCCGCTATGTACTCTAATAATCAACGAGTTTGACTAGCTTTGAGGAAACCTTTTGTGCCGCCGACATCTGAACA ACCGCTCGTCGTACGATCCATTGAATATGTGGGTTCAAAGCCTACTATTAAAAGAAGTATGGTCGTGGCTGTCGA TGATCTGCCTTTGAAGGATGAAAAGGCATTGAAGAGATTGGTTTTACTCGCTGGTCCGAGATGGACACCAAGTCC TCCTGCAGACGCTGGTATCAGCAAACATGCGGAATGGAAACACGGATTTGTGAAGATTTCTTGTGAAGATTTTAT GCAACCTGCTAGGAATCTCAAGTGGATTAGTGATACGTTAGACAGACTAGTAGAGAGAGCTAATGTAAGTTATTC CAATTTGCCTCTTTCAGTTTTCTTGGATTCATGATTGTTTTTTTAGAGTCCAGCTAAGGAGGATGGTGTTTGGGA TGGTTTACCAGTTGATTTGCGCCATGTTATGGCCAAATCGAAAAAGGGCAAAAAAGGCGATCATTTACGCGGTCG GGTCCTTGCTAAACCCACTCTTCGTGACTTCCCCCGGGAGTGGCTGCCAAAGTCGCCTACAACTCATGAGCAACC ATCATTGTCTTCATCCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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