Protein ID | AgabiH97|010170 |
Gene name | |
Location | scaffold_1:2396161..2398317 |
Strand | - |
Gene length (bp) | 2156 |
Transcript length (bp) | 1878 |
Coding sequence length (bp) | 1878 |
Protein length (aa) | 626 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF09779 | Ima1_N | Ima1 N-terminal domain | 3.8E-34 | 63 | 191 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O13681|IINMP_SCHPO | Integral inner nuclear membrane protein ima1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=IMA1 PE=4 SV=2 | 62 | 388 | 4.0E-20 |
sp|A4IG66|TM201_DANRE | Transmembrane protein 201 OS=Danio rerio GN=tmem201 PE=2 SV=1 | 59 | 215 | 6.0E-08 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 17 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 244 | 263 | 19 |
2 | 268 | 290 | 22 |
3 | 316 | 338 | 22 |
4 | 358 | 380 | 22 |
5 | 568 | 590 | 22 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >AgabiH97|010170 MVQSCVAVVYRAGWHGFSDVCASSTLHPQKSDQFTTLQVDITSQSQSHPQHMSHLFRRHSNILCFFCQTPVSSLP KDIRNFKCPTCACWNKYDANGEIISDEPAMYDENLNKDSFAKRASPRRDRFPTSYGPGPFCHTCQTNQMLLMNLL SSYLPPPEHPDYAQRLEMFPEYKESLHMRYPPVCESCMPGVEDEIRRKDQMARAKALGASLRNSRGKENKRRVPG KGRVREKETTEFYWWKIRGGLWFTTSTVSFMFNATAALGYRPFYLLGSIQPVLPLFVLVTIFWTVWDPTYASFRR AQKQGRDVRVIGKKEYIVLQMIVWITRLLTSVLFWLWWYSPKNNHFELYDPSSQLARIYFSTITTIELTAQGLSF SCLRLKHPPTVRLIDTRTHLSTPSRSSTPYSSGSMSHGETSLTSQPSTSICSTPIEPDLSVLSLSSKPVMTHKKP VFGLPSLLSNLPTQKGQEHGHQDIDIDPNDGDGDDENAMDWTPTDPRIAARRKRKNGQLRDDVYLRPPKFFAPEQ PTGLESLFARTSIDDDVMMLDGQDDSGGGRLFFRKVGRYFKRWSLICATVIVPVLVAVLVRRAWNLDINVTSLQK GQVVVRMSSPSPFPLDCRVEVDEFA* |
Coding | >AgabiH97|010170 ATGGTGCAGAGCTGTGTAGCTGTAGTCTATCGCGCAGGCTGGCATGGATTTTCCGATGTCTGCGCCTCTTCGACC CTCCACCCACAGAAGAGTGATCAGTTTACCACGCTCCAAGTTGATATCACATCCCAGTCCCAGTCTCACCCCCAA CACATGTCACACTTGTTCCGGCGACATAGCAATATCCTCTGCTTCTTCTGCCAAACTCCAGTCTCATCCCTACCC AAGGATATACGTAACTTCAAATGCCCCACCTGTGCCTGCTGGAACAAATACGATGCGAACGGCGAAATAATCTCC GACGAACCCGCGATGTACGATGAAAATCTCAACAAGGACTCCTTTGCGAAGCGGGCGTCACCACGAAGAGACCGA TTTCCAACTTCCTACGGACCAGGCCCATTTTGTCATACATGCCAGACAAACCAAATGCTTCTTATGAACCTACTT TCGTCCTATCTTCCTCCCCCTGAGCACCCCGATTATGCCCAACGCCTTGAAATGTTCCCTGAATACAAGGAATCC CTACATATGCGATACCCGCCTGTCTGTGAGAGCTGTATGCCCGGTGTCGAGGACGAGATCCGAAGGAAAGACCAG ATGGCTCGTGCAAAGGCTCTGGGCGCATCGCTGAGGAATAGCAGAGGAAAGGAGAATAAAAGGAGGGTGCCTGGA AAGGGCAGAGTTCGCGAGAAAGAGACGACCGAATTCTATTGGTGGAAAATACGTGGGGGTCTCTGGTTCACAACA TCTACAGTATCTTTCATGTTCAACGCAACAGCCGCTCTTGGCTATAGACCTTTCTATCTCCTCGGATCAATACAG CCCGTTCTTCCTCTCTTTGTTCTGGTGACCATTTTCTGGACGGTATGGGATCCAACGTACGCCTCCTTTCGGAGG GCTCAAAAACAGGGACGTGACGTCCGTGTCATTGGAAAGAAAGAGTACATTGTATTGCAAATGATTGTATGGATC ACAAGATTACTTACAAGTGTACTATTCTGGCTCTGGTGGTACAGTCCCAAGAACAATCATTTTGAACTTTACGAC CCTTCTTCACAACTAGCACGCATCTATTTCTCCACAATAACAACTATTGAACTCACCGCACAAGGATTATCTTTT TCTTGTCTCCGACTCAAGCATCCTCCTACTGTTCGCCTCATTGACACTCGCACGCATCTTTCCACACCTTCTCGC TCATCTACACCCTATTCATCAGGCTCCATGAGCCACGGCGAGACCAGTTTAACTTCTCAGCCATCTACAAGTATT TGTTCAACGCCCATCGAACCTGATTTATCCGTTCTTTCGCTCTCTTCCAAACCAGTCATGACACACAAGAAACCC GTGTTTGGTTTACCCTCTCTTTTATCTAATCTACCGACTCAAAAAGGACAAGAACATGGACATCAAGATATTGAT ATTGATCCTAATGATGGGGATGGGGACGATGAAAATGCTATGGATTGGACGCCAACCGATCCTCGAATAGCGGCT CGACGGAAACGGAAGAATGGACAGCTACGCGATGATGTGTATCTTCGGCCACCAAAGTTTTTCGCACCTGAACAG CCAACTGGATTAGAGAGCTTGTTTGCAAGGACGAGTATTGATGACGACGTGATGATGCTAGACGGTCAAGACGAC TCTGGTGGTGGAAGATTATTCTTTAGAAAAGTTGGAAGATATTTTAAGAGGTGGTCGTTGATCTGTGCGACGGTC ATCGTCCCGGTACTGGTTGCAGTGCTGGTTAGGAGAGCATGGAACTTGGATATCAACGTGACGTCACTCCAGAAA GGGCAAGTTGTTGTCAGGATGTCTTCGCCTTCGCCGTTTCCTCTTGACTGTCGTGTTGAGGTGGATGAATTTGCT TGA |
Transcript | >AgabiH97|010170 ATGGTGCAGAGCTGTGTAGCTGTAGTCTATCGCGCAGGCTGGCATGGATTTTCCGATGTCTGCGCCTCTTCGACC CTCCACCCACAGAAGAGTGATCAGTTTACCACGCTCCAAGTTGATATCACATCCCAGTCCCAGTCTCACCCCCAA CACATGTCACACTTGTTCCGGCGACATAGCAATATCCTCTGCTTCTTCTGCCAAACTCCAGTCTCATCCCTACCC AAGGATATACGTAACTTCAAATGCCCCACCTGTGCCTGCTGGAACAAATACGATGCGAACGGCGAAATAATCTCC GACGAACCCGCGATGTACGATGAAAATCTCAACAAGGACTCCTTTGCGAAGCGGGCGTCACCACGAAGAGACCGA TTTCCAACTTCCTACGGACCAGGCCCATTTTGTCATACATGCCAGACAAACCAAATGCTTCTTATGAACCTACTT TCGTCCTATCTTCCTCCCCCTGAGCACCCCGATTATGCCCAACGCCTTGAAATGTTCCCTGAATACAAGGAATCC CTACATATGCGATACCCGCCTGTCTGTGAGAGCTGTATGCCCGGTGTCGAGGACGAGATCCGAAGGAAAGACCAG ATGGCTCGTGCAAAGGCTCTGGGCGCATCGCTGAGGAATAGCAGAGGAAAGGAGAATAAAAGGAGGGTGCCTGGA AAGGGCAGAGTTCGCGAGAAAGAGACGACCGAATTCTATTGGTGGAAAATACGTGGGGGTCTCTGGTTCACAACA TCTACAGTATCTTTCATGTTCAACGCAACAGCCGCTCTTGGCTATAGACCTTTCTATCTCCTCGGATCAATACAG CCCGTTCTTCCTCTCTTTGTTCTGGTGACCATTTTCTGGACGGTATGGGATCCAACGTACGCCTCCTTTCGGAGG GCTCAAAAACAGGGACGTGACGTCCGTGTCATTGGAAAGAAAGAGTACATTGTATTGCAAATGATTGTATGGATC ACAAGATTACTTACAAGTGTACTATTCTGGCTCTGGTGGTACAGTCCCAAGAACAATCATTTTGAACTTTACGAC CCTTCTTCACAACTAGCACGCATCTATTTCTCCACAATAACAACTATTGAACTCACCGCACAAGGATTATCTTTT TCTTGTCTCCGACTCAAGCATCCTCCTACTGTTCGCCTCATTGACACTCGCACGCATCTTTCCACACCTTCTCGC TCATCTACACCCTATTCATCAGGCTCCATGAGCCACGGCGAGACCAGTTTAACTTCTCAGCCATCTACAAGTATT TGTTCAACGCCCATCGAACCTGATTTATCCGTTCTTTCGCTCTCTTCCAAACCAGTCATGACACACAAGAAACCC GTGTTTGGTTTACCCTCTCTTTTATCTAATCTACCGACTCAAAAAGGACAAGAACATGGACATCAAGATATTGAT ATTGATCCTAATGATGGGGATGGGGACGATGAAAATGCTATGGATTGGACGCCAACCGATCCTCGAATAGCGGCT CGACGGAAACGGAAGAATGGACAGCTACGCGATGATGTGTATCTTCGGCCACCAAAGTTTTTCGCACCTGAACAG CCAACTGGATTAGAGAGCTTGTTTGCAAGGACGAGTATTGATGACGACGTGATGATGCTAGACGGTCAAGACGAC TCTGGTGGTGGAAGATTATTCTTTAGAAAAGTTGGAAGATATTTTAAGAGGTGGTCGTTGATCTGTGCGACGGTC ATCGTCCCGGTACTGGTTGCAGTGCTGGTTAGGAGAGCATGGAACTTGGATATCAACGTGACGTCACTCCAGAAA GGGCAAGTTGTTGTCAGGATGTCTTCGCCTTCGCCGTTTCCTCTTGACTGTCGTGTTGAGGTGGATGAATTTGCT TGA |
Gene | >AgabiH97|010170 ATGGTGCAGAGCTGTGTAGCTGTAGTCTATCGCGCAGGCTGGCATGGATTTTCCGATGTCTGCGCCTCTTCGACC CTCCACCCACAGAAGAGTGATCAGTTTACCACGCTCCAAGTTGATATCACATCCCAGTCCCAGTCTCACCCCCAA CACATGTCACACTTGTTCCGGCGACATAGCAATATCCTCTGCTTCTTCTGCCAAACTCCAGTCTCATCCCTACCC AAGGATATACGTAACTTCAAATGCCCCACCTGTGCCTGCTGGAACAAATACGATGCGAACGGCGAAATAATCTCC GACGAACCCGCGATGTACGATGAAAATCTCAACAAGGACTCCTTTGCGAAGCGGGGTACGTTCAGGAGCGTATGC CTCAAGACCCAACTAACGTTTATCGCAGCGTCACCACGAAGAGACCGATTTCCAACTTCCTACGGACCAGGCCCA TTTTGTCATACATGCCAGACAAACCAAATGCTTCTTATGAACCTACTTTCGTCCTATCTTCCTCCCCCTGAGGTG TGCCGTTTTCCCAACTATCTCACTTTCCACCTACTCAAATGTACATCGCATTACATAGCACCCCGATTATGCCCA ACGCCTTGAAATGTTCCCTGAATACAAGGAATCCCTACATATGCGATACCCGCCTGTCTGTGAGAGCTGTATGCC CGGTGTCGAGGACGAGATCCGAAGGAAAGACCAGATGGCTCGTGCAAAGGCTCTGGGCGCATCGCTGAGGAATAG CAGAGGAAAGGAGAATAAAAGGAGGGTGCCTGGAAAGGGCAGAGTTCGCGAGAAAGAGACGACCGAATTCTATTG GTGGAAAATACGTGGGGGTCTCTGGTTCACAACATCTACAGTATCTTTCATGTTCAACGCAACAGGTACGTGGCC ATTTAACTGCCTACTCACAATTCGCTCGGTTCTAACTCTTCATAAGCCGCTCTTGGCTATAGACCTTTCTATCTC CTCGGATCAATACAGCCCGTTCTTCCTCTCTTTGTTCTGGTGACCATTTTCTGGACGGTATGGGATCCAACGTAC GCCTCCTTTCGGAGGGCTCAAAAACAGGGACGTGACGTCCGTGTCATTGGAAAGAAAGAGTACATTGTAAGTCGG TCCTCTCAGTCCTCGTGTTAATATTGATTGAAGCATTTTCTGTTAGGTATTGCAAATGATTGTATGGATCACAAG ATTACTTACAAGTGTACTATTCTGGCTCTGGTGGTACAGTCCCAAGAACAATCATTTTGAACTTTACGACCCTTC TTCACAACTAGCACGCATCTATTTCTCCACAATAACAACTATTGAACTCACCGTGAGTCTCTCCGAAACTGAATC TAAAACGAAACATGAGCTGACGGGCTGTGTCTTAGGCACAAGGATTATCTTTTTCTTGTCTCCGACTCAAGCATC CTCCTACTGTTCGCCTCATTGACACTCGCACGCATCTTTCCACACCTTCTCGCTCATCTACACCCTATTCATCAG GCTCCATGAGCCACGGCGAGACCAGTTTAACTTCTCAGCCATCTACAAGTATTTGTTCAACGCCCATCGAACCTG ATTTATCCGTTCTTTCGCTCTCTTCCAAACCAGTCATGACACACAAGAAACCCGTGTTTGGTTTACCCTCTCTTT TATCTAATCTACCGACTCAAAAAGGACAAGAACATGGACATCAAGATATTGATATTGATCCTAATGATGGGGATG GGGACGATGAAAATGCTATGGATTGGACGCCAACCGATCCTCGAATAGCGGCTCGACGGAAACGGAAGAATGGAC AGCTACGCGATGATGTGTATCTTCGGCCACCAAAGTTTTTCGCACCTGAACAGCCAACTGGATTAGAGAGCTTGT TTGCAAGGACGAGTATTGATGACGACGTGATGATGCTAGACGGTCAAGACGACTCTGGTGGTGGAAGATTATTCT TTAGAAAAGTTGGAAGATATTTTAAGAGGTGGTCGTTGATCTGTGCGACGGTCATCGTCCCGGTACTGGTTGCAG TGCTGGTTAGGAGAGCATGGAACTTGGATATCAACGTGACGTCACTCCAGAAAGGGCAAGTTGTTGTCAGGATGT CTTCGCCTTCGCCGTTTCCTCTTGACTGTCGTGTTGAGGTGGATGAATTTGCTTGA |