© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|009400 |
| Gene name | |
| Location | scaffold_1:2216882..2217969 |
| Strand | - |
| Gene length (bp) | 1087 |
| Transcript length (bp) | 777 |
| Coding sequence length (bp) | 777 |
| Protein length (aa) | 259 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06687 | SUR7 | SUR7/PalI family | 4.5E-17 | 9 | 248 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005886 | plasma membrane | Yes |
| GO:0016020 | membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 32 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 149 | 171 | 22 |
| 3 | 178 | 200 | 22 |
| 4 | 225 | 247 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 148.40 | 88.80 | 208.00 |
| Initials | Initials knots | 131.78 | 78.86 | 184.70 |
| Pileal_Stipeal_center | Stage I stipe center | 149.27 | 89.14 | 209.40 |
| Pileal_Stipeal_shell | Stage I stipe shell | 137.76 | 82.51 | 193.00 |
| DIF_stipe_center | Stage II stipe center | 150.31 | 90.32 | 210.31 |
| DIF_stipe_shell | Stage II stipe shell | 150.99 | 90.54 | 211.44 |
| DIF_stipe_skin | Stage II stipe skin | 155.10 | 93.23 | 216.98 |
| DIF_cap_skin | Stage II cap skin | 148.28 | 88.93 | 207.62 |
| DIF_cap_tissue | Stage II cap tissue | 144.35 | 86.46 | 202.24 |
| DIF_gill_tissue | Stage II gill tissue | 145.95 | 87.48 | 204.41 |
| YFB_stipe_center | Young fruiting body stipe center | 175.21 | 105.37 | 245.06 |
| YFB_stipe_shell | Young fruiting body stipe shell | 160.64 | 96.50 | 224.79 |
| YFB_stipe_skin | Young fruiting body stipe skin | 153.27 | 92.13 | 214.41 |
| YFB_cap_skin | Young fruiting body cap skin | 157.99 | 95.02 | 220.97 |
| YFB_cap_tissue | Young fruiting body cap tissue | 138.70 | 82.73 | 194.67 |
| YFB_gill_tissue | Young fruiting body gill tissue | 153.42 | 91.75 | 215.08 |
| YFB_veil | Young fruiting body veil | 148.62 | 89.15 | 208.08 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.977378 | no |
| Casing | YFB_stipe_center | 0.671584 | no |
| Casing | YFB_stipe_shell | 0.869520 | no |
| Casing | YFB_stipe_skin | 0.953623 | no |
| Casing | YFB_cap_skin | 0.904124 | no |
| Casing | YFB_cap_tissue | 0.895410 | no |
| Casing | YFB_gill_tissue | 0.951435 | no |
| Casing | YFB_veil | 0.996937 | no |
| Casing | Initials | 0.785574 | no |
| Casing | Pileal_Stipeal_center | 0.990970 | no |
| Casing | Pileal_Stipeal_shell | 0.877517 | no |
| Casing | DIF_stipe_center | 0.981687 | no |
| Casing | DIF_stipe_shell | 0.975790 | no |
| Casing | DIF_stipe_skin | 0.933418 | no |
| Casing | DIF_cap_skin | 0.998290 | no |
| Casing | DIF_cap_tissue | 0.959814 | no |
| DIF_gill_tissue | YFB_stipe_center | 0.629369 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.837780 | no |
| DIF_gill_tissue | YFB_stipe_skin | 0.925263 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.871309 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.923335 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.923568 | no |
| DIF_gill_tissue | YFB_veil | 0.972240 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.854387 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.748765 | no |
| YFB_stipe_center | YFB_cap_skin | 0.820234 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.506520 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.751797 | no |
| YFB_stipe_center | YFB_veil | 0.673301 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.928823 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.975107 | no |
| YFB_stipe_shell | YFB_cap_tissue | 0.721963 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.929789 | no |
| YFB_stipe_shell | YFB_veil | 0.870475 | no |
| YFB_stipe_skin | YFB_cap_skin | 0.954946 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.829235 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.998365 | no |
| YFB_stipe_skin | YFB_veil | 0.953095 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.761397 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.957035 | no |
| YFB_cap_skin | YFB_veil | 0.902043 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.827638 | no |
| YFB_cap_tissue | YFB_veil | 0.888706 | no |
| YFB_gill_tissue | YFB_veil | 0.952320 | no |
| Initials | DIF_gill_tissue | 0.818546 | no |
| Initials | YFB_stipe_center | 0.366140 | no |
| Initials | YFB_stipe_shell | 0.584608 | no |
| Initials | YFB_stipe_skin | 0.700763 | no |
| Initials | YFB_cap_skin | 0.625404 | no |
| Initials | YFB_cap_tissue | 0.921044 | no |
| Initials | YFB_gill_tissue | 0.699718 | no |
| Initials | YFB_veil | 0.775991 | no |
| Initials | Pileal_Stipeal_center | 0.764002 | no |
| Initials | Pileal_Stipeal_shell | 0.931121 | no |
| Initials | DIF_stipe_center | 0.751271 | no |
| Initials | DIF_stipe_shell | 0.740638 | no |
| Initials | DIF_stipe_skin | 0.668252 | no |
| Initials | DIF_cap_skin | 0.778374 | no |
| Initials | DIF_cap_tissue | 0.841831 | no |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.966897 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.683033 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.878407 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.961158 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.911483 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.880678 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.959699 | no |
| Pileal_Stipeal_center | YFB_veil | 0.992898 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.863356 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.989491 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.983154 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.941443 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.989868 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.949013 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.909046 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.474750 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.701043 | no |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.807607 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.740105 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.989110 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.807003 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.873947 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.853004 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.844673 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.779500 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.876171 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.927040 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.957408 | no |
| DIF_stipe_center | YFB_stipe_center | 0.703924 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.893133 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.972224 | no |
| DIF_stipe_center | YFB_cap_skin | 0.925143 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.869363 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.970845 | no |
| DIF_stipe_center | YFB_veil | 0.982660 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.993329 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.954523 | no |
| DIF_stipe_center | DIF_cap_skin | 0.979062 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.939373 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.950844 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.712426 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.903770 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.979259 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.932948 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.861938 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.977504 | no |
| DIF_stipe_shell | YFB_veil | 0.976599 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.961538 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.973480 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.932378 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.905191 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.774402 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.947914 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.982650 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.973017 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.804141 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.983711 | no |
| DIF_stipe_skin | YFB_veil | 0.935199 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.930058 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.883406 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.977185 | no |
| DIF_cap_skin | YFB_stipe_center | 0.669956 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.866224 | no |
| DIF_cap_skin | YFB_stipe_skin | 0.950720 | no |
| DIF_cap_skin | YFB_cap_skin | 0.900134 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.894478 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.948619 | no |
| DIF_cap_skin | YFB_veil | 0.995947 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.959748 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.983831 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.596653 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.812134 | no |
| DIF_cap_tissue | YFB_stipe_skin | 0.905639 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.847331 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.939951 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.903501 | no |
| DIF_cap_tissue | YFB_veil | 0.955961 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|009400 MRGELCVGVGSLLSLVSVLLMIFVHVGQINTSNVPRNVYMAKVNVSAYGDALSFAIAPDPVFGLYTDNASAPLQA AAGLRQIYKFGIYSHCAYLNDTAGRCGNQTIGDQFKPYEAITNDMSANWSIFTQSFIPDSTFRDSKFLGHNSKAA YWMLLLGLLCAAAAFITGVAKHNMTFLVSTLFAIAGSLLLLIGASIWTVIIQRAANINDLPVHSHSGDQSVPLGI VVSLGPGLLLTWAAFACLVASVIPYMISCCTFR* |
| Coding | >AgabiH97|009400 ATGCGCGGCGAACTCTGCGTCGGCGTTGGCTCGCTCCTTTCTCTTGTGTCTGTTCTTCTCATGATTTTCGTCCAT GTCGGTCAAATTAATACCTCAAATGTCCCCCGTAACGTCTACATGGCCAAAGTGAACGTCTCGGCGTACGGCGAT GCCCTGAGTTTTGCCATTGCGCCAGATCCAGTTTTCGGCCTCTATACCGATAACGCGTCCGCACCTCTGCAGGCT GCCGCGGGCCTGCGCCAAATCTACAAATTTGGCATCTATTCCCATTGTGCATACCTCAATGATACCGCAGGCCGA TGCGGAAACCAAACCATAGGCGATCAGTTCAAACCATACGAAGCCATTACGAACGACATGAGCGCAAACTGGTCC ATATTCACTCAATCATTCATACCCGACTCTACTTTTCGGGATTCCAAGTTTCTGGGGCACAACTCCAAGGCGGCT TACTGGATGCTTCTCCTTGGGCTGTTGTGTGCTGCCGCTGCATTCATCACCGGTGTCGCTAAACACAATATGACA TTCCTCGTTTCGACTCTCTTCGCGATAGCGGGAAGCCTATTGTTGTTGATTGGCGCTAGTATTTGGACTGTTATC ATCCAGAGGGCTGCAAACATCAATGACCTCCCCGTGCATTCGCACTCGGGGGACCAGTCCGTACCACTTGGCATC GTTGTATCTCTTGGCCCGGGCTTACTCTTGACGTGGGCTGCGTTTGCTTGCCTCGTGGCGTCCGTGATTCCATAC ATGATTAGCTGCTGCACGTTTCGCTGA |
| Transcript | >AgabiH97|009400 ATGCGCGGCGAACTCTGCGTCGGCGTTGGCTCGCTCCTTTCTCTTGTGTCTGTTCTTCTCATGATTTTCGTCCAT GTCGGTCAAATTAATACCTCAAATGTCCCCCGTAACGTCTACATGGCCAAAGTGAACGTCTCGGCGTACGGCGAT GCCCTGAGTTTTGCCATTGCGCCAGATCCAGTTTTCGGCCTCTATACCGATAACGCGTCCGCACCTCTGCAGGCT GCCGCGGGCCTGCGCCAAATCTACAAATTTGGCATCTATTCCCATTGTGCATACCTCAATGATACCGCAGGCCGA TGCGGAAACCAAACCATAGGCGATCAGTTCAAACCATACGAAGCCATTACGAACGACATGAGCGCAAACTGGTCC ATATTCACTCAATCATTCATACCCGACTCTACTTTTCGGGATTCCAAGTTTCTGGGGCACAACTCCAAGGCGGCT TACTGGATGCTTCTCCTTGGGCTGTTGTGTGCTGCCGCTGCATTCATCACCGGTGTCGCTAAACACAATATGACA TTCCTCGTTTCGACTCTCTTCGCGATAGCGGGAAGCCTATTGTTGTTGATTGGCGCTAGTATTTGGACTGTTATC ATCCAGAGGGCTGCAAACATCAATGACCTCCCCGTGCATTCGCACTCGGGGGACCAGTCCGTACCACTTGGCATC GTTGTATCTCTTGGCCCGGGCTTACTCTTGACGTGGGCTGCGTTTGCTTGCCTCGTGGCGTCCGTGATTCCATAC ATGATTAGCTGCTGCACGTTTCGCTGA |
| Gene | >AgabiH97|009400 ATGCGCGGCGAACTCTGCGTCGGCGTTGGCTCGCTCCTTTCGTACGTCTGTGCCCTCTCTCGCCCCTCTCGCTTT TGTTCACCCCTCCGCCCAGTCTTGTGTCTGTTCTTCTCATGATTTTCGTCCATGTGCGGCCCACGATCTCTTTTC AGCGCCGTCGCTCAATCCACCCCTTCTCAGGTCGGTCAAATTAATACCTCAAATGTCCCCCGTAACGTCTACATG GTATGTCCCCATTTCCGTCTCCGCGCATCGGCTTGTTCATCCGTCCTAGGCCAAAGTGAACGTCTCGGCGTACGG GTATGTCTTCGCGCATGTCATTTACAGCCCTGTCTTACATAGGGTGTTGTCCAGCGATGCCCTGAGTTTTGCCAT TGCGCCAGATCCAGTTTTCGGCCTCTATACCGATAACGCGTCCGCACCTCTGCAGGCTGCCGCGGGCCTGCGCCA AATCTACAAATTTGGCATCTATTCCCATTGTGCATACCTCAATGATACCGCAGGCCGATGCGGAAACCAAACCAT AGGCGATCAGTTCAAACCATACGAAGCCATTACGAACGACATGAGCGCAAACTGGTCCATATTCACTCAATCATT CATACCCGACTCTACTTTTCGGGATTCCAAGTTTCTGGGGCACAACTCCAAGGCGGCTTACTGGATGCTTCTCCT TGGGCTGTTGTGTGCTGCCGCTGCATTCATCACGTACGTCGCTTGAATTTGATCCTCGATTTTTTTTATTTATAG GCAGTACAGCGGTGTCGCTAAACACAATATGACATTCCTCGTTTCGACTCTCTTCGCGATAGCGGGAAGCCTATT GTTGTTGATTGGCGCTAGTATTTGGACTGTTATCATCCAGAGGGCTGCAAACATCAATGACCTCCCCGTGCATTC GCACTCGGGGGACCAGTCCGTACCACTTGGCATCGTTGTATCTCTTGGCCCGGGCTTACTCTTGACGTGGGCTGC GTTTGCTTGCCTCGTGGCGTCCGTGATTCCATACATGATTAGGTGCGTCATGCATGCTGTTAACCATCCATGGCC CCACTGAGTCCCCCGCAGCTGCTGCACGTTTCGCTGA |