© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|009400 |
| Gene name | |
| Location | scaffold_1:2216882..2217969 |
| Strand | - |
| Gene length (bp) | 1087 |
| Transcript length (bp) | 777 |
| Coding sequence length (bp) | 777 |
| Protein length (aa) | 259 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06687 | SUR7 | SUR7/PalI family | 4.5E-17 | 9 | 248 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005886 | plasma membrane | Yes |
| GO:0016020 | membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 32 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 149 | 171 | 22 |
| 3 | 178 | 200 | 22 |
| 4 | 225 | 247 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|009400 MRGELCVGVGSLLSLVSVLLMIFVHVGQINTSNVPRNVYMAKVNVSAYGDALSFAIAPDPVFGLYTDNASAPLQA AAGLRQIYKFGIYSHCAYLNDTAGRCGNQTIGDQFKPYEAITNDMSANWSIFTQSFIPDSTFRDSKFLGHNSKAA YWMLLLGLLCAAAAFITGVAKHNMTFLVSTLFAIAGSLLLLIGASIWTVIIQRAANINDLPVHSHSGDQSVPLGI VVSLGPGLLLTWAAFACLVASVIPYMISCCTFR* |
| Coding | >AgabiH97|009400 ATGCGCGGCGAACTCTGCGTCGGCGTTGGCTCGCTCCTTTCTCTTGTGTCTGTTCTTCTCATGATTTTCGTCCAT GTCGGTCAAATTAATACCTCAAATGTCCCCCGTAACGTCTACATGGCCAAAGTGAACGTCTCGGCGTACGGCGAT GCCCTGAGTTTTGCCATTGCGCCAGATCCAGTTTTCGGCCTCTATACCGATAACGCGTCCGCACCTCTGCAGGCT GCCGCGGGCCTGCGCCAAATCTACAAATTTGGCATCTATTCCCATTGTGCATACCTCAATGATACCGCAGGCCGA TGCGGAAACCAAACCATAGGCGATCAGTTCAAACCATACGAAGCCATTACGAACGACATGAGCGCAAACTGGTCC ATATTCACTCAATCATTCATACCCGACTCTACTTTTCGGGATTCCAAGTTTCTGGGGCACAACTCCAAGGCGGCT TACTGGATGCTTCTCCTTGGGCTGTTGTGTGCTGCCGCTGCATTCATCACCGGTGTCGCTAAACACAATATGACA TTCCTCGTTTCGACTCTCTTCGCGATAGCGGGAAGCCTATTGTTGTTGATTGGCGCTAGTATTTGGACTGTTATC ATCCAGAGGGCTGCAAACATCAATGACCTCCCCGTGCATTCGCACTCGGGGGACCAGTCCGTACCACTTGGCATC GTTGTATCTCTTGGCCCGGGCTTACTCTTGACGTGGGCTGCGTTTGCTTGCCTCGTGGCGTCCGTGATTCCATAC ATGATTAGCTGCTGCACGTTTCGCTGA |
| Transcript | >AgabiH97|009400 ATGCGCGGCGAACTCTGCGTCGGCGTTGGCTCGCTCCTTTCTCTTGTGTCTGTTCTTCTCATGATTTTCGTCCAT GTCGGTCAAATTAATACCTCAAATGTCCCCCGTAACGTCTACATGGCCAAAGTGAACGTCTCGGCGTACGGCGAT GCCCTGAGTTTTGCCATTGCGCCAGATCCAGTTTTCGGCCTCTATACCGATAACGCGTCCGCACCTCTGCAGGCT GCCGCGGGCCTGCGCCAAATCTACAAATTTGGCATCTATTCCCATTGTGCATACCTCAATGATACCGCAGGCCGA TGCGGAAACCAAACCATAGGCGATCAGTTCAAACCATACGAAGCCATTACGAACGACATGAGCGCAAACTGGTCC ATATTCACTCAATCATTCATACCCGACTCTACTTTTCGGGATTCCAAGTTTCTGGGGCACAACTCCAAGGCGGCT TACTGGATGCTTCTCCTTGGGCTGTTGTGTGCTGCCGCTGCATTCATCACCGGTGTCGCTAAACACAATATGACA TTCCTCGTTTCGACTCTCTTCGCGATAGCGGGAAGCCTATTGTTGTTGATTGGCGCTAGTATTTGGACTGTTATC ATCCAGAGGGCTGCAAACATCAATGACCTCCCCGTGCATTCGCACTCGGGGGACCAGTCCGTACCACTTGGCATC GTTGTATCTCTTGGCCCGGGCTTACTCTTGACGTGGGCTGCGTTTGCTTGCCTCGTGGCGTCCGTGATTCCATAC ATGATTAGCTGCTGCACGTTTCGCTGA |
| Gene | >AgabiH97|009400 ATGCGCGGCGAACTCTGCGTCGGCGTTGGCTCGCTCCTTTCGTACGTCTGTGCCCTCTCTCGCCCCTCTCGCTTT TGTTCACCCCTCCGCCCAGTCTTGTGTCTGTTCTTCTCATGATTTTCGTCCATGTGCGGCCCACGATCTCTTTTC AGCGCCGTCGCTCAATCCACCCCTTCTCAGGTCGGTCAAATTAATACCTCAAATGTCCCCCGTAACGTCTACATG GTATGTCCCCATTTCCGTCTCCGCGCATCGGCTTGTTCATCCGTCCTAGGCCAAAGTGAACGTCTCGGCGTACGG GTATGTCTTCGCGCATGTCATTTACAGCCCTGTCTTACATAGGGTGTTGTCCAGCGATGCCCTGAGTTTTGCCAT TGCGCCAGATCCAGTTTTCGGCCTCTATACCGATAACGCGTCCGCACCTCTGCAGGCTGCCGCGGGCCTGCGCCA AATCTACAAATTTGGCATCTATTCCCATTGTGCATACCTCAATGATACCGCAGGCCGATGCGGAAACCAAACCAT AGGCGATCAGTTCAAACCATACGAAGCCATTACGAACGACATGAGCGCAAACTGGTCCATATTCACTCAATCATT CATACCCGACTCTACTTTTCGGGATTCCAAGTTTCTGGGGCACAACTCCAAGGCGGCTTACTGGATGCTTCTCCT TGGGCTGTTGTGTGCTGCCGCTGCATTCATCACGTACGTCGCTTGAATTTGATCCTCGATTTTTTTTATTTATAG GCAGTACAGCGGTGTCGCTAAACACAATATGACATTCCTCGTTTCGACTCTCTTCGCGATAGCGGGAAGCCTATT GTTGTTGATTGGCGCTAGTATTTGGACTGTTATCATCCAGAGGGCTGCAAACATCAATGACCTCCCCGTGCATTC GCACTCGGGGGACCAGTCCGTACCACTTGGCATCGTTGTATCTCTTGGCCCGGGCTTACTCTTGACGTGGGCTGC GTTTGCTTGCCTCGTGGCGTCCGTGATTCCATACATGATTAGGTGCGTCATGCATGCTGTTAACCATCCATGGCC CCACTGAGTCCCCCGCAGCTGCTGCACGTTTCGCTGA |