© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|009040 |
| Gene name | |
| Location | scaffold_1:2128156..2130308 |
| Strand | - |
| Gene length (bp) | 2152 |
| Transcript length (bp) | 1425 |
| Coding sequence length (bp) | 1425 |
| Protein length (aa) | 475 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.4E-30 | 38 | 327 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 2.3E-11 | 302 | 450 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74852|YQ92_SCHPO | Uncharacterized MFS-type transporter C18.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC18.02 PE=3 SV=1 | 24 | 462 | 5.0E-30 |
| sp|Q27963|VMAT2_BOVIN | Synaptic vesicular amine transporter OS=Bos taurus GN=SLC18A2 PE=1 SV=1 | 73 | 443 | 2.0E-13 |
| sp|P59845|VACHB_DANRE | Probable vesicular acetylcholine transporter-B OS=Danio rerio GN=slc18a3b PE=2 SV=1 | 43 | 211 | 5.0E-13 |
| sp|Q01827|VMAT2_RAT | Synaptic vesicular amine transporter OS=Rattus norvegicus GN=Slc18a2 PE=1 SV=2 | 73 | 449 | 1.0E-12 |
| sp|Q08C75|VACHA_DANRE | Probable vesicular acetylcholine transporter-A OS=Danio rerio GN=slc18a3a PE=2 SV=1 | 35 | 222 | 1.0E-12 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74852|YQ92_SCHPO | Uncharacterized MFS-type transporter C18.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC18.02 PE=3 SV=1 | 24 | 462 | 5.0E-30 |
| sp|Q27963|VMAT2_BOVIN | Synaptic vesicular amine transporter OS=Bos taurus GN=SLC18A2 PE=1 SV=1 | 73 | 443 | 2.0E-13 |
| sp|P59845|VACHB_DANRE | Probable vesicular acetylcholine transporter-B OS=Danio rerio GN=slc18a3b PE=2 SV=1 | 43 | 211 | 5.0E-13 |
| sp|Q01827|VMAT2_RAT | Synaptic vesicular amine transporter OS=Rattus norvegicus GN=Slc18a2 PE=1 SV=2 | 73 | 449 | 1.0E-12 |
| sp|Q08C75|VACHA_DANRE | Probable vesicular acetylcholine transporter-A OS=Danio rerio GN=slc18a3a PE=2 SV=1 | 35 | 222 | 1.0E-12 |
| sp|Q8BRU6|VMAT2_MOUSE | Synaptic vesicular amine transporter OS=Mus musculus GN=Slc18a2 PE=1 SV=1 | 73 | 449 | 2.0E-12 |
| sp|Q05940|VMAT2_HUMAN | Synaptic vesicular amine transporter OS=Homo sapiens GN=SLC18A2 PE=1 SV=2 | 73 | 449 | 6.0E-12 |
| sp|P34711|UNC17_CAEEL | Vesicular acetylcholine transporter unc-17 OS=Caenorhabditis elegans GN=unc-17 PE=1 SV=1 | 35 | 213 | 1.0E-11 |
| sp|Q62666|VACHT_RAT | Vesicular acetylcholine transporter OS=Rattus norvegicus GN=Slc18a3 PE=2 SV=2 | 101 | 214 | 3.0E-11 |
| sp|O35304|VACHT_MOUSE | Vesicular acetylcholine transporter OS=Mus musculus GN=Slc18a3 PE=2 SV=1 | 101 | 214 | 5.0E-11 |
| sp|Q16572|VACHT_HUMAN | Vesicular acetylcholine transporter OS=Homo sapiens GN=SLC18A3 PE=2 SV=2 | 101 | 214 | 7.0E-11 |
| sp|Q91514|VACHT_TORTO | Vesicular acetylcholine transporter OS=Torpedo torpedo PE=2 SV=1 | 35 | 211 | 6.0E-10 |
| sp|P81721|VACHT_TORCA | Vesicular acetylcholine transporter OS=Torpedo californica PE=2 SV=2 | 35 | 211 | 6.0E-10 |
| sp|Q91498|VACHT_TORMA | Vesicular acetylcholine transporter OS=Torpedo marmorata PE=2 SV=2 | 35 | 211 | 8.0E-10 |
| sp|O17444|VACHT_DROME | Vesicular acetylcholine transporter OS=Drosophila melanogaster GN=VAChT PE=2 SV=2 | 35 | 216 | 5.0E-09 |
| sp|P9WJW9|Y2459_MYCTU | Uncharacterized MFS-type transporter Rv2459 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv2459 PE=3 SV=1 | 31 | 192 | 6.0E-08 |
| sp|P9WJW8|Y2459_MYCTO | Uncharacterized MFS-type transporter MT2534 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT2534 PE=3 SV=1 | 31 | 192 | 6.0E-08 |
| sp|D3Z5L6|S18B1_MOUSE | MFS-type transporter SLC18B1 OS=Mus musculus GN=Slc18b1 PE=2 SV=2 | 44 | 193 | 2.0E-06 |
| sp|Q6GIU7|NORA_STAAR | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain MRSA252) GN=norA PE=3 SV=1 | 30 | 214 | 2.0E-06 |
| sp|Q5HHX4|NORA_STAAC | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain COL) GN=norA PE=3 SV=1 | 30 | 214 | 3.0E-06 |
| sp|Q6GBD5|NORA_STAAS | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain MSSA476) GN=norA PE=3 SV=1 | 30 | 214 | 3.0E-06 |
| sp|P0A0J6|NORA_STAAW | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain MW2) GN=norA PE=3 SV=1 | 30 | 214 | 3.0E-06 |
| sp|P0A0J7|NORA_STAAU | Quinolone resistance protein NorA OS=Staphylococcus aureus GN=norA PE=3 SV=1 | 30 | 214 | 3.0E-06 |
| sp|P0A0J5|NORA_STAAN | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain N315) GN=norA PE=3 SV=1 | 30 | 214 | 3.0E-06 |
| sp|P0A0J4|NORA_STAAM | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=norA PE=3 SV=1 | 30 | 214 | 3.0E-06 |
| sp|P9WJX6|Y191_MYCTO | Uncharacterized MFS-type transporter MT0201 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT0201 PE=3 SV=1 | 69 | 188 | 4.0E-06 |
| sp|O34724|YCEJ_BACSU | Uncharacterized MFS-type transporter YceJ OS=Bacillus subtilis (strain 168) GN=yceJ PE=3 SV=1 | 69 | 197 | 4.0E-06 |
| sp|P9WJX7|Y191_MYCTU | Uncharacterized MFS-type transporter Rv0191 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv0191 PE=3 SV=1 | 69 | 188 | 4.0E-06 |
| sp|Q6NT16|S18B1_HUMAN | MFS-type transporter SLC18B1 OS=Homo sapiens GN=SLC18B1 PE=1 SV=1 | 5 | 192 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0051179 | localization | No |
| GO:0003674 | molecular_function | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0009987 | cellular process | No |
| GO:0005215 | transporter activity | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 34 | 56 | 22 |
| 2 | 69 | 91 | 22 |
| 3 | 103 | 125 | 22 |
| 4 | 130 | 147 | 17 |
| 5 | 160 | 182 | 22 |
| 6 | 187 | 209 | 22 |
| 7 | 332 | 354 | 22 |
| 8 | 358 | 377 | 19 |
| 9 | 384 | 406 | 22 |
| 10 | 421 | 443 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|009040 MASTGSSSPGSVKSHPSRPPWGHRWRSSYWFTTYVVGLGVAVDVIVYSIIIPVIPFQLEHLGYTGISALSGWLLF AYSGGLLISTIPIALWSEHYNARKYPMIFGLFALAGSQIMFMEAPTYAVMCVARVIQGISSSIVWVVGLAFLCEA TPPEIIGRQMGIAMAGLSFGLVLAPPIGGVLYSRFGFRGPFVFALSAAFLDGVSRFIVIEPKEAMKWIPVPILRS ENAELPDEAVQPDSKSGAEGKVQEIDREPDGPSPGSLRSGERNPLAGIEQVVEKPLPLLQVIVKLSRSSRALVAL AISLVYGLVYSCQEPPLPLHLQSVWGLDAHQVGILLLALSVPMVFSSPLTGWLTDIFGAEWTATFSMLLATPWWG VLTIDDSLALFGVAFALESFFTSGAISPLTAELAAVSRSMQGVGYAHIYAAFNIAYGIGTSVGPIIGGQMYDHIS QGCFSLHWRKASTQKIVYCFEIMK* |
| Coding | >AgabiH97|009040 ATGGCTAGCACGGGTTCTTCAAGTCCAGGGAGCGTCAAATCACATCCATCACGTCCACCTTGGGGCCATCGTTGG AGATCCTCGTACTGGTTCACAACTTACGTCGTTGGCCTAGGAGTGGCGGTTGATGTCATCGTTTATTCTATCATT ATACCTGTCATTCCGTTTCAATTGGAACATCTTGGATACACTGGTATTTCTGCCCTATCTGGATGGTTATTATTC GCCTACTCGGGAGGTCTATTAATCTCCACAATTCCAATTGCTCTATGGTCAGAACACTACAATGCTCGTAAATAC CCTATGATATTCGGTCTCTTTGCTCTTGCAGGCTCTCAAATCATGTTTATGGAAGCACCGACATATGCTGTCATG TGTGTTGCTCGTGTAATTCAGGGTATCAGTTCTTCTATTGTATGGGTCGTCGGATTGGCCTTCCTCTGTGAAGCA ACGCCGCCGGAAATAATTGGGAGACAAATGGGGATTGCTATGGCTGGCCTTTCGTTCGGCCTGGTGCTTGCGCCA CCCATAGGGGGCGTTCTATACAGTCGCTTCGGTTTTCGAGGGCCTTTCGTTTTTGCGCTAAGCGCTGCTTTCCTT GACGGAGTTTCTCGCTTCATCGTCATTGAACCAAAAGAAGCAATGAAGTGGATTCCGGTCCCCATTCTGCGATCA GAGAACGCTGAGCTTCCTGATGAAGCAGTTCAACCTGATTCGAAGAGTGGCGCAGAGGGGAAAGTACAAGAGATT GATCGTGAACCGGATGGTCCGTCCCCTGGGAGTCTCAGGTCTGGGGAAAGGAACCCTCTGGCTGGCATCGAGCAA GTGGTCGAGAAACCCTTGCCTCTCCTTCAGGTGATCGTGAAGCTTTCGAGATCGTCTCGGGCTCTGGTAGCCCTG GCTATCTCTCTCGTTTATGGATTAGTGTACAGCTGCCAAGAACCTCCGTTACCCCTCCACCTCCAGTCGGTCTGG GGGTTGGATGCTCACCAGGTCGGAATTTTGTTGTTGGCCCTTTCCGTACCAATGGTATTTTCTTCCCCCTTGACA GGGTGGCTGACAGATATTTTTGGAGCAGAATGGACAGCAACCTTCTCGATGCTCCTTGCAACTCCCTGGTGGGGA GTATTGACCATCGATGACTCGCTCGCTCTATTTGGGGTGGCTTTCGCCTTGGAGAGTTTCTTCACTTCGGGAGCT ATTTCTCCACTGACTGCCGAACTCGCCGCAGTTTCGAGAAGTATGCAGGGTGTTGGCTATGCTCACATTTACGCC GCCTTTAACATTGCATACGGCATTGGTACCAGCGTTGGCCCGATCATCGGCGGACAGATGTATGATCACATCTCA CAGGGCTGCTTTTCCCTTCACTGGAGAAAGGCCTCTACTCAAAAGATTGTGTACTGTTTTGAAATTATGAAGTAA |
| Transcript | >AgabiH97|009040 ATGGCTAGCACGGGTTCTTCAAGTCCAGGGAGCGTCAAATCACATCCATCACGTCCACCTTGGGGCCATCGTTGG AGATCCTCGTACTGGTTCACAACTTACGTCGTTGGCCTAGGAGTGGCGGTTGATGTCATCGTTTATTCTATCATT ATACCTGTCATTCCGTTTCAATTGGAACATCTTGGATACACTGGTATTTCTGCCCTATCTGGATGGTTATTATTC GCCTACTCGGGAGGTCTATTAATCTCCACAATTCCAATTGCTCTATGGTCAGAACACTACAATGCTCGTAAATAC CCTATGATATTCGGTCTCTTTGCTCTTGCAGGCTCTCAAATCATGTTTATGGAAGCACCGACATATGCTGTCATG TGTGTTGCTCGTGTAATTCAGGGTATCAGTTCTTCTATTGTATGGGTCGTCGGATTGGCCTTCCTCTGTGAAGCA ACGCCGCCGGAAATAATTGGGAGACAAATGGGGATTGCTATGGCTGGCCTTTCGTTCGGCCTGGTGCTTGCGCCA CCCATAGGGGGCGTTCTATACAGTCGCTTCGGTTTTCGAGGGCCTTTCGTTTTTGCGCTAAGCGCTGCTTTCCTT GACGGAGTTTCTCGCTTCATCGTCATTGAACCAAAAGAAGCAATGAAGTGGATTCCGGTCCCCATTCTGCGATCA GAGAACGCTGAGCTTCCTGATGAAGCAGTTCAACCTGATTCGAAGAGTGGCGCAGAGGGGAAAGTACAAGAGATT GATCGTGAACCGGATGGTCCGTCCCCTGGGAGTCTCAGGTCTGGGGAAAGGAACCCTCTGGCTGGCATCGAGCAA GTGGTCGAGAAACCCTTGCCTCTCCTTCAGGTGATCGTGAAGCTTTCGAGATCGTCTCGGGCTCTGGTAGCCCTG GCTATCTCTCTCGTTTATGGATTAGTGTACAGCTGCCAAGAACCTCCGTTACCCCTCCACCTCCAGTCGGTCTGG GGGTTGGATGCTCACCAGGTCGGAATTTTGTTGTTGGCCCTTTCCGTACCAATGGTATTTTCTTCCCCCTTGACA GGGTGGCTGACAGATATTTTTGGAGCAGAATGGACAGCAACCTTCTCGATGCTCCTTGCAACTCCCTGGTGGGGA GTATTGACCATCGATGACTCGCTCGCTCTATTTGGGGTGGCTTTCGCCTTGGAGAGTTTCTTCACTTCGGGAGCT ATTTCTCCACTGACTGCCGAACTCGCCGCAGTTTCGAGAAGTATGCAGGGTGTTGGCTATGCTCACATTTACGCC GCCTTTAACATTGCATACGGCATTGGTACCAGCGTTGGCCCGATCATCGGCGGACAGATGTATGATCACATCTCA CAGGGCTGCTTTTCCCTTCACTGGAGAAAGGCCTCTACTCAAAAGATTGTGTACTGTTTTGAAATTATGAAGTAA |
| Gene | >AgabiH97|009040 ATGGCTAGCACGGGTTCTTCAAGTCCAGGGAGCGTCAAATCACATCCATCACGTCCACCTTGGGGCCATCGTTGG AGATCCTCGTACTGGTTCACAACTTACGTCGTTGGCCTAGGTAGGCATGCTGTACATGATGTACGCCCGACGGTT ATCGACTGATGATTGCACAAACAGGAGTGGCGGTTGATGTCATCGTTTATTCTATCATTATACCTGTCATTCCGT TTCAATTGGAACATCTTGGATACACTGGTATTTCTGCCCTATCTGGATGGTTATTATTCGCCTACGTGAATTGCC TTTTTTCCCTGGCTCCGAGTCATGTTTTCTCATTGTACTCTCTTTGATAAATTAAGTCGGGAGGTCTATTAATCT GTGAGTGGTCGCCATCGTTTCGTTCCCATTCCGTTGATAGCTCATATAATCGTGTAAGCCACAATTCCAATTGCT CTATGGTCAGAACACTACAATGCTCGTAAATACCCTATGATATTCGGTCTCTTTGCTCTTGCAGGCTCTCAAATC ATGTTTATGGAAGCACCGACATATGCTGTCATGTGTGTTGCTCGTGTAATTCAGGGTATCAGTTCTTCTATTGTA TGGGTCGTCGGATTGGCCTTCCTGTATGTTGCCGATATCGAAGCTGTGAAAGCAGTGCAACTAATAATCCGCACA GCTGTGAAGCAACGCCGCCGGAAATAATTGGGAGTTCGTCTATTATTACTATCTGTTCTCTTCTTGTCGGCTTGA CTGTCTGTTTTCAGGACAAATGGGGATTGCTATGGCTGGCCTTTCGTTCGGGTAGGTGAAATCTTCCTTCCCGTT GCTCCTAGTCTCCTTCGACTTAATGACATGACTATTTCACAGCCTGGTGCTTGCGCCACCCATAGGGGGCGTTCT ATACAGTCGCTTCGGTTTTCGAGGGCCTTTCGTTTTTGCGCTAAGCGCTGCTTTCCTTGACGGAGTTTCTCGCTT CATCGTCATTGAACCAAAAGAAGCAATGAAGTGGATTCCGGTCCCCATTCTGCGATCAGAGAACGCTGAGCTTCC TGATGAAGCAGTTCAACCTGATTCGAAGAGTGGCGCAGAGGGGAAAGTACAAGAGATTGATCGTGAACCGGATGG TCCGTCCCCTGGGAGTCTCAGGTCTGGGGAAAGGAACCCTCTGGCTGGCATCGAGCAAGTGGTCGAGAAACCCTT GCCTCTCCTTCAGGTGATCGTGAAGCTTTCGAGATCGTCTCGGGCTCTGGTAGCCCTGGCTATCTCTCTCGTTTA TGGGTATGTTGCAGGTCGAGAATTTGGACCCGCCTTCTGATACTATGGCAGATTAGTGTACAGCTGCCAAGAACC TCCGTTACCCCTCCACCTCCAGTCGGTCTGGGGGTTGGATGCTCACCAGGTCGGAATTTTGTTGTTGGCCCTTTC CGTACCAATGGTATTTTGTAAGTATATTGTGTAGTGCCCGTTTGCGAAATAAACTAAACTTCTGCCCAGCTTCCC CCTTGACAGGGTGGCTGACAGATATTTTTGGAGCAGAATGGACAGCAACCTTCTCGATGCTCCTTGCAACTCCCT GGTGGGGAGTATTGACCATCGATGACTCGCTCGCTCTATTTGGGGTGGCTTTCGCCTTGGAGAGTAGGTAATCCT TAGGTATAGAAGACATCTAATTTACATAGGGCTCTCCAGGTTTCTTCACTTCGGGAGCTATTTCTCCACTGACTG CCGAACTCGCCGCAGTTTCGAGAAGTATGCAGGGTGTTGGCTGTATGTCTTCCTAGCTGTTGACTTTTCTTCCCA TAAACTTATTTCATTGTGAAGATGCTCACATTTACGCCGCCTTTAACATTGCATACGGCATTGGTACCAGCGGTG AGTCCCTGAGGCATCGTAAGATGATCTAAAGGTTGATTTAAATATAATTTTTAGTTGGCCCGATCATCGGCGGAC AGGTGAGCTGTTTCAGCGTTTCGACAGAAACAAGTTCCCTCAGGTTGCTTTTGAAGATGTATGATCACATCTCAC AGGGCTGGTTTGCGATATGTATGTTTGACTTAGCGATGTTATTGCTTTCGGTTTTGTTAGCTTTTCCCTTCACTG GAGAAAGGCCTCTACTCAAAAGATTGTGTACTGTTTTGAAATTATGAAGTAA |