Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|008840
Gene name
Locationscaffold_1:2076921..2079236
Strand-
Gene length (bp)2315
Transcript length (bp)1143
Coding sequence length (bp)1143
Protein length (aa) 381

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02265 S1-P1_nuclease S1/P1 Nuclease 4.2E-67 98 374

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P24504|NUP3_PENSQ Nuclease PA3 OS=Penicillium sp. PE=1 SV=1 98 372 6.0E-64
sp|P24289|NUP1_PENCI Nuclease P1 OS=Penicillium citrinum PE=1 SV=1 98 372 2.0E-63
sp|P24021|NUS1_ASPOR Nuclease S1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=nucS PE=1 SV=2 78 372 6.0E-60
sp|Q8LDW6|ENDO3_ARATH Endonuclease 3 OS=Arabidopsis thaliana GN=ENDO3 PE=2 SV=1 77 379 3.0E-38
sp|Q9C9G4|ENDO2_ARATH Endonuclease 2 OS=Arabidopsis thaliana GN=ENDO2 PE=1 SV=1 73 373 1.0E-36
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Swissprot ID Swissprot Description Start End E-value
sp|P24504|NUP3_PENSQ Nuclease PA3 OS=Penicillium sp. PE=1 SV=1 98 372 6.0E-64
sp|P24289|NUP1_PENCI Nuclease P1 OS=Penicillium citrinum PE=1 SV=1 98 372 2.0E-63
sp|P24021|NUS1_ASPOR Nuclease S1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=nucS PE=1 SV=2 78 372 6.0E-60
sp|Q8LDW6|ENDO3_ARATH Endonuclease 3 OS=Arabidopsis thaliana GN=ENDO3 PE=2 SV=1 77 379 3.0E-38
sp|Q9C9G4|ENDO2_ARATH Endonuclease 2 OS=Arabidopsis thaliana GN=ENDO2 PE=1 SV=1 73 373 1.0E-36
sp|F4JJL0|ENDO4_ARATH Endonuclease 4 OS=Arabidopsis thaliana GN=ENDO4 PE=3 SV=1 74 373 5.0E-36
sp|Q9SXA6|ENDO1_ARATH Endonuclease 1 OS=Arabidopsis thaliana GN=ENDO1 PE=1 SV=1 71 373 5.0E-35
sp|F4JJL3|ENDO5_ARATH Endonuclease 5 OS=Arabidopsis thaliana GN=ENDO5 PE=2 SV=1 78 373 2.0E-33
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GO

GO Term Description Terminal node
GO:0006308 DNA catabolic process Yes
GO:0003676 nucleic acid binding Yes
GO:0004519 endonuclease activity Yes
GO:0071704 organic substance metabolic process No
GO:1901575 organic substance catabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0008152 metabolic process No
GO:0097159 organic cyclic compound binding No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0009056 catabolic process No
GO:0008150 biological_process No
GO:1901361 organic cyclic compound catabolic process No
GO:0044248 cellular catabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0005488 binding No
GO:0016787 hydrolase activity No
GO:1901363 heterocyclic compound binding No
GO:0006259 DNA metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0019439 aromatic compound catabolic process No
GO:0044237 cellular metabolic process No
GO:0009057 macromolecule catabolic process No
GO:0044265 cellular macromolecule catabolic process No
GO:0003824 catalytic activity No
GO:0016788 hydrolase activity, acting on ester bonds No
GO:0009987 cellular process No
GO:0043170 macromolecule metabolic process No
GO:0044238 primary metabolic process No
GO:0004518 nuclease activity No
GO:0044270 cellular nitrogen compound catabolic process No
GO:0034655 nucleobase-containing compound catabolic process No
GO:0003674 molecular_function No
GO:0046700 heterocycle catabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.1919 0.2218 0.8444 0.0867 0.1201 0.0496 0.2526 0.3579 0.1662 0.0061

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 56 78 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup5525
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|008840
Agaricus bisporus var bisporus H97 AgabiH97|008840 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|008840
MTKVAISYAKSTKKARRYSHHDKPGARIRKSHGCAPSKTRGPTSYHKTLILIPYRWFILPGYLTALLLFPAAALQ
ASMKIILPLFLTASLGASSAYGWGADGHETVGFVAMSFLAPKALSFVRSSLGCTYDESLGPAATWADEVRPEPAY
AWSANLHFVDALDNAPTSCSVSQSRDCPDNQCILGAIANYTTRVADTHLSAVQRQEALKFLDHFIGDIAQPLHVE
NIAAGGNGIDAKCNGSSTNLHSVWDSGMINRLLPSKYNNSVTTWAAALVTRIKSGSYKCEASNWIACSSTTETVS
KNHDSHVKHDIIPLECPLVWAKDSNMFGCSVVFNFTSGQDLCTSSYYDEAIPVIEKQIAKAGYRLAAWLNSIFDG
ATHLP*
Coding >AgabiH97|008840
ATGACAAAGGTAGCTATAAGTTATGCTAAAAGTACTAAGAAAGCACGCCGATATTCGCATCACGACAAACCTGGA
GCAAGGATTCGGAAATCTCACGGGTGTGCGCCCAGCAAAACTAGGGGTCCGACATCATATCATAAAACGTTGATA
TTAATACCATACCGATGGTTCATACTCCCAGGATACCTCACCGCGCTGCTGCTCTTTCCAGCGGCAGCTCTTCAA
GCATCGATGAAAATCATCCTCCCCCTTTTCCTCACGGCTTCCCTTGGGGCAAGTTCCGCATATGGCTGGGGTGCT
GATGGTCATGAGACTGTTGGCTTTGTTGCGATGTCGTTTTTGGCGCCCAAGGCATTGTCGTTTGTCCGATCCTCT
TTGGGGTGCACTTACGATGAATCTCTTGGTCCTGCCGCCACGTGGGCAGATGAAGTGAGACCTGAACCGGCATAT
GCATGGTCCGCCAACCTTCACTTTGTTGACGCTCTGGACAATGCTCCGACCTCTTGTTCGGTTTCTCAAAGCAGA
GATTGTCCTGACAATCAATGTATTTTGGGTGCTATTGCTAACTACACGACACGTGTTGCCGATACCCATCTCTCG
GCCGTCCAGCGTCAAGAGGCTCTTAAATTTCTTGACCATTTCATTGGCGATATCGCTCAACCCCTTCATGTTGAG
AACATTGCCGCGGGCGGTAACGGAATTGACGCCAAGTGTAATGGTTCATCGACAAATCTGCACTCAGTTTGGGAC
TCTGGCATGATCAATAGGCTCCTTCCTAGCAAATACAATAACTCAGTAACAACCTGGGCTGCTGCCTTAGTCACG
AGGATTAAATCTGGTAGCTACAAATGCGAGGCCTCGAACTGGATTGCTTGTTCTTCGACCACCGAAACAGTCAGC
AAAAACCATGACTCGCACGTAAAACATGACATTATCCCACTGGAGTGTCCTTTGGTTTGGGCTAAAGACAGTAAT
ATGTTTGGATGTTCCGTCGTCTTTAATTTCACGTCTGGTCAGGATTTATGCACATCTAGCTACTATGATGAAGCT
ATTCCCGTGATTGAGAAGCAGATTGCAAAAGCAGGGTACCGCTTGGCTGCCTGGCTCAATTCCATTTTTGATGGT
GCTACCCACTTGCCTTGA
Transcript >AgabiH97|008840
ATGACAAAGGTAGCTATAAGTTATGCTAAAAGTACTAAGAAAGCACGCCGATATTCGCATCACGACAAACCTGGA
GCAAGGATTCGGAAATCTCACGGGTGTGCGCCCAGCAAAACTAGGGGTCCGACATCATATCATAAAACGTTGATA
TTAATACCATACCGATGGTTCATACTCCCAGGATACCTCACCGCGCTGCTGCTCTTTCCAGCGGCAGCTCTTCAA
GCATCGATGAAAATCATCCTCCCCCTTTTCCTCACGGCTTCCCTTGGGGCAAGTTCCGCATATGGCTGGGGTGCT
GATGGTCATGAGACTGTTGGCTTTGTTGCGATGTCGTTTTTGGCGCCCAAGGCATTGTCGTTTGTCCGATCCTCT
TTGGGGTGCACTTACGATGAATCTCTTGGTCCTGCCGCCACGTGGGCAGATGAAGTGAGACCTGAACCGGCATAT
GCATGGTCCGCCAACCTTCACTTTGTTGACGCTCTGGACAATGCTCCGACCTCTTGTTCGGTTTCTCAAAGCAGA
GATTGTCCTGACAATCAATGTATTTTGGGTGCTATTGCTAACTACACGACACGTGTTGCCGATACCCATCTCTCG
GCCGTCCAGCGTCAAGAGGCTCTTAAATTTCTTGACCATTTCATTGGCGATATCGCTCAACCCCTTCATGTTGAG
AACATTGCCGCGGGCGGTAACGGAATTGACGCCAAGTGTAATGGTTCATCGACAAATCTGCACTCAGTTTGGGAC
TCTGGCATGATCAATAGGCTCCTTCCTAGCAAATACAATAACTCAGTAACAACCTGGGCTGCTGCCTTAGTCACG
AGGATTAAATCTGGTAGCTACAAATGCGAGGCCTCGAACTGGATTGCTTGTTCTTCGACCACCGAAACAGTCAGC
AAAAACCATGACTCGCACGTAAAACATGACATTATCCCACTGGAGTGTCCTTTGGTTTGGGCTAAAGACAGTAAT
ATGTTTGGATGTTCCGTCGTCTTTAATTTCACGTCTGGTCAGGATTTATGCACATCTAGCTACTATGATGAAGCT
ATTCCCGTGATTGAGAAGCAGATTGCAAAAGCAGGGTACCGCTTGGCTGCCTGGCTCAATTCCATTTTTGATGGT
GCTACCCACTTGCCTTGA
Gene >AgabiH97|008840
ATGACAAAGGTAGCTATAAGTTATGCTAAAAGTACTAAGAAAGCACGCCGATATTCGCATCGTAAGTTGATATTT
TCGGCTCAACCGAAGACCTTGCTTGATTGTCAGCTTTTTCACTATTCATCCGCCCTCAGGCCGGATCCGCGCTGT
TTGCTGACACACGTGTCTTAGCGCGGAAACGCTGACGATTCATCACCGCGCGGCTATCAGTTCAAGTGTTTGACT
GCTGTTGAGTACTGTTGCTAATTGAGGAGTATCTTCAAGACGACAAACCTGGAGCAAGGATTCGGAAATCTCACG
GGGTTAGCAGTCGCCGACGTGGTTTAGCAATCTCGATCAGCTCTGATGCCTGCGCGCTGGTGTGCGCTAGTGTGC
GCCCAGCAAAACTAGGTTCCGCCAAATCCAATTATACCCTCGTGTATGCCAAGAGTTGTTGAGGCGCATTTCGAT
AGGGGTCCGACATCATATCATAAAACGTTGGTGAGTTATTTATGGTGTATACGATAAAAGAGGATAAAAGTTGTC
GATGTCGAATATGCACATTGCGAATTATGACAGATATTAATACCATACCGATGGTTCATACTCCCAGGATACCTC
ACCGGTGCCGAGCTCTAGACATACATGGACTGAGCGGTCGCACGTTCTTGAGCAGTTTATCCGCTACTTATATAA
AGCGCTGCTGCTCTTTCCAGCGGCAGCTCTTCAAGCATCGATGAAAATCATCCTCCCCCTTTTCCTCACGGCTTC
CCTTGGGGCAAGTTCCGCATATGGCTGGGGTGCTGATGGTCATGAGACTGTTGGGTAGGCCCTCTATTCCTGTTG
CTCGCCACCTTGCTAATGATTCTTAGCTTTGTTGCGATGTCGGCGAGTGTTCAAGTTCTGGTGTGATGCTTTGTT
CTCACCTAATGAGAGTTATAGTTTTTGGCGCCCAAGGCATTGTCGTTTGTCCGATCCTCTTTGGGGTGCACTTAC
GATGAATCTCTTGGTCCTGCCGCCACGGTTTGTAAAATAATTCAACATATATGCATCCCTTTGACCCGGAATGAT
AGTGGGCAGATGAAGTGAGACCTGAACCGGCATATGCATGGTAAGAAACGCAGTCTTCTTTTCACCCAGTTTTTA
TCTGTGGCGATCATAGGTCCGCCAACCTTCACTTTGTTGACGCTCTGGGTTCGTTTTGGCACTCTGTATCATTAT
ATATACGTTGATAAATCTCACGCAGACAATGCTCCGACCTCTTGTTCGGTTTCTCAAAGCAGAGATTGTCCTGAC
AATCAATGTATTTGTCAGTGGCACTCTTATAAAGAATTACTTCTCGGTACTAATTTAGTCTTAGTGGGTGCTATT
GCTAACTACACGACACGTGTTGCCGATACCCATCTCTCGGCCGTCCAGCGTCAAGAGGCTCTTAAATTTCTTGGT
TCGCATACTACGTCTTTGTCTATGGCAACGGAGCTGACTACAATCTTTCCCTACCAAAAGACCATGTGTGTGGTT
CCGCAGAGTTTTACGATCTGATACTGAAATTAGTTGCAGTTCATTGGCGATATCGCTCAACCCCTTCATGTTGAG
AACATTGCCGCGGGCGGTAACGGAATTGACGCCAAGTGTAATGGTTCATCGACAAATCTGCACTCAGTGAGCTTT
TGTTACATTCTCTTTGATATGCGCAGGTGAGATAACCGGGTGTCATGCAATAGGTTTGGGGTATGTCCATGGAGA
ATATCCGGTCAGAGCTTGACTTACACCTTAAACAGACTCTGGCATGATCAATAGGCTCCTTCCTAGCAAATACAA
TAACTCAGTAACAACCTGGGCTGCTGCCTTAGTCACGAGGATTAAAGTGCGTGCTATCGTTATTCCGGGAATTGA
TAATATGTTTATAGTATTATCAGTCTGGTAGCTACAAATGCGAGGCCTCGAACTGGATTGCTTGTTCTTCGACCA
CCGAAACAGTCAGCAAAAACCATGACTCGCACGTAAAACATGACATTATCCCACTGGAGTGTCCTTTGGTTTGGG
CTAAAGACAGTAATATGTTTGGATGTGTAAGCATTCATTGCGTCTCTTTCATGATTTCACGCTGAAACAGAGATA
GTCCGTCGTCTTTAATTTCACGTCTGGTCAGGATTTATGCACATCTAGCTACTATGATGAAGCTATTCCCGTGGT
AAGTATAGTCATTGTGCTGGACCACATGTGTTTCACTCACGTCTTCATTGGCACAGATTGAGAAGCAGATTGCAA
AAGCAGGGTACCGCTTGGCTGCCTGGCTCAATTCCATTTTTGATGGTGCTACCCACTTGCCTTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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