© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|007330 |
| Gene name | |
| Location | scaffold_1:1738181..1739308 |
| Strand | + |
| Gene length (bp) | 1127 |
| Transcript length (bp) | 1023 |
| Coding sequence length (bp) | 1023 |
| Protein length (aa) | 341 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00013 | KH_1 | KH domain | 9.7E-11 | 28 | 88 |
| PF00013 | KH_1 | KH domain | 2.6E-12 | 112 | 174 |
| PF00013 | KH_1 | KH domain | 2.1E-15 | 252 | 316 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74919|RNC1_SCHPO | RNA-binding protein rnc1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rnc1 PE=1 SV=1 | 25 | 326 | 5.0E-105 |
| sp|P57724|PCBP4_MOUSE | Poly(rC)-binding protein 4 OS=Mus musculus GN=Pcbp4 PE=1 SV=1 | 24 | 323 | 7.0E-42 |
| sp|P57723|PCBP4_HUMAN | Poly(rC)-binding protein 4 OS=Homo sapiens GN=PCBP4 PE=2 SV=1 | 24 | 337 | 2.0E-41 |
| sp|Q0VCU0|PCBP4_BOVIN | Poly(rC)-binding protein 4 OS=Bos taurus GN=PCBP4 PE=2 SV=1 | 24 | 323 | 2.0E-41 |
| sp|P57721|PCBP3_HUMAN | Poly(rC)-binding protein 3 OS=Homo sapiens GN=PCBP3 PE=2 SV=2 | 16 | 322 | 4.0E-41 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74919|RNC1_SCHPO | RNA-binding protein rnc1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rnc1 PE=1 SV=1 | 25 | 326 | 5.0E-105 |
| sp|P57724|PCBP4_MOUSE | Poly(rC)-binding protein 4 OS=Mus musculus GN=Pcbp4 PE=1 SV=1 | 24 | 323 | 7.0E-42 |
| sp|P57723|PCBP4_HUMAN | Poly(rC)-binding protein 4 OS=Homo sapiens GN=PCBP4 PE=2 SV=1 | 24 | 337 | 2.0E-41 |
| sp|Q0VCU0|PCBP4_BOVIN | Poly(rC)-binding protein 4 OS=Bos taurus GN=PCBP4 PE=2 SV=1 | 24 | 323 | 2.0E-41 |
| sp|P57721|PCBP3_HUMAN | Poly(rC)-binding protein 3 OS=Homo sapiens GN=PCBP3 PE=2 SV=2 | 16 | 322 | 4.0E-41 |
| sp|P57722|PCBP3_MOUSE | Poly(rC)-binding protein 3 OS=Mus musculus GN=Pcbp3 PE=1 SV=3 | 24 | 322 | 6.0E-41 |
| sp|Q61990|PCBP2_MOUSE | Poly(rC)-binding protein 2 OS=Mus musculus GN=Pcbp2 PE=1 SV=1 | 24 | 322 | 2.0E-33 |
| sp|O19048|PCBP1_RABIT | Poly(rC)-binding protein 1 OS=Oryctolagus cuniculus GN=PCBP1 PE=2 SV=1 | 24 | 323 | 1.0E-32 |
| sp|P60335|PCBP1_MOUSE | Poly(rC)-binding protein 1 OS=Mus musculus GN=Pcbp1 PE=1 SV=1 | 24 | 323 | 1.0E-32 |
| sp|Q15365|PCBP1_HUMAN | Poly(rC)-binding protein 1 OS=Homo sapiens GN=PCBP1 PE=1 SV=2 | 24 | 323 | 1.0E-32 |
| sp|Q5E9A3|PCBP1_BOVIN | Poly(rC)-binding protein 1 OS=Bos taurus GN=PCBP1 PE=2 SV=1 | 24 | 323 | 1.0E-32 |
| sp|P38151|PBP2_YEAST | PAB1-binding protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PBP2 PE=1 SV=1 | 16 | 326 | 8.0E-32 |
| sp|C5DIR2|HEK2_LACTC | Heterogeneous nuclear rnp K-like protein 2 OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=HEK2 PE=3 SV=1 | 22 | 326 | 9.0E-31 |
| sp|Q6CNI6|HEK2_KLULA | Heterogeneous nuclear rnp K-like protein 2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=HEK2 PE=3 SV=1 | 23 | 331 | 4.0E-26 |
| sp|Q756R8|HEK2_ASHGO | Heterogeneous nuclear rnp K-like protein 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=HEK2 PE=3 SV=1 | 34 | 330 | 5.0E-26 |
| sp|C5E0I9|HEK2_ZYGRC | Heterogeneous nuclear rnp K-like protein 2 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) GN=HEK2 PE=3 SV=1 | 22 | 333 | 1.0E-24 |
| sp|A7TT46|HEK2_VANPO | Heterogeneous nuclear rnp K-like protein 2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=HEK2 PE=3 SV=1 | 28 | 326 | 1.0E-24 |
| sp|B3LNH0|HEK2_YEAS1 | Heterogeneous nuclear rnp K-like protein 2 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=HEK2 PE=3 SV=1 | 22 | 326 | 5.0E-23 |
| sp|P38199|HEK2_YEAST | Heterogeneous nuclear rnp K-like protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HEK2 PE=1 SV=1 | 22 | 326 | 6.0E-23 |
| sp|A6ZKR5|HEK2_YEAS7 | Heterogeneous nuclear rnp K-like protein 2 OS=Saccharomyces cerevisiae (strain YJM789) GN=HEK2 PE=3 SV=1 | 22 | 326 | 6.0E-23 |
| sp|C8Z3W4|HEK2_YEAS8 | Heterogeneous nuclear rnp K-like protein 2 OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=HEK2 PE=3 SV=1 | 22 | 326 | 8.0E-23 |
| sp|C7GND0|HEK2_YEAS2 | Heterogeneous nuclear rnp K-like protein 2 OS=Saccharomyces cerevisiae (strain JAY291) GN=HEK2 PE=3 SV=1 | 22 | 326 | 8.0E-23 |
| sp|O57526|IF23B_XENLA | Insulin-like growth factor 2 mRNA-binding protein 3-B OS=Xenopus laevis GN=igf2bp3-b PE=1 SV=1 | 19 | 322 | 4.0E-22 |
| sp|Q15366|PCBP2_HUMAN | Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=1 SV=1 | 24 | 180 | 5.0E-22 |
| sp|Q6FUD8|HEK2_CANGA | Heterogeneous nuclear rnp K-like protein 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=HEK2 PE=3 SV=1 | 28 | 329 | 4.0E-21 |
| sp|Q5RB68|IF2B2_PONAB | Insulin-like growth factor 2 mRNA-binding protein 2 OS=Pongo abelii GN=IGF2BP2 PE=2 SV=1 | 1 | 322 | 9.0E-21 |
| sp|O73932|IF23A_XENLA | Insulin-like growth factor 2 mRNA-binding protein 3-A OS=Xenopus laevis GN=igf2bp3-a PE=1 SV=1 | 19 | 322 | 8.0E-20 |
| sp|Q9PW80|IF2B3_DANRE | Insulin-like growth factor 2 mRNA-binding protein 3 OS=Danio rerio GN=igf2bp3 PE=1 SV=1 | 9 | 322 | 6.0E-19 |
| sp|O00425|IF2B3_HUMAN | Insulin-like growth factor 2 mRNA-binding protein 3 OS=Homo sapiens GN=IGF2BP3 PE=1 SV=2 | 25 | 322 | 5.0E-18 |
| sp|Q5SF07|IF2B2_MOUSE | Insulin-like growth factor 2 mRNA-binding protein 2 OS=Mus musculus GN=Igf2bp2 PE=1 SV=1 | 1 | 322 | 6.0E-18 |
| sp|Q5ZLP8|IF2B3_CHICK | Insulin-like growth factor 2 mRNA-binding protein 3 OS=Gallus gallus GN=IGF2BP3 PE=2 SV=1 | 9 | 322 | 7.0E-18 |
| sp|O42254|IF2B1_CHICK | Insulin-like growth factor 2 mRNA-binding protein 1 OS=Gallus gallus GN=IGF2BP1 PE=1 SV=1 | 27 | 322 | 7.0E-18 |
| sp|Q9Y6M1|IF2B2_HUMAN | Insulin-like growth factor 2 mRNA-binding protein 2 OS=Homo sapiens GN=IGF2BP2 PE=1 SV=2 | 1 | 322 | 3.0E-17 |
| sp|Q9CPN8|IF2B3_MOUSE | Insulin-like growth factor 2 mRNA-binding protein 3 OS=Mus musculus GN=Igf2bp3 PE=1 SV=1 | 25 | 322 | 4.0E-16 |
| sp|Q9NZI8|IF2B1_HUMAN | Insulin-like growth factor 2 mRNA-binding protein 1 OS=Homo sapiens GN=IGF2BP1 PE=1 SV=2 | 10 | 322 | 6.0E-16 |
| sp|Q8CGX0|IF2B1_RAT | Insulin-like growth factor 2 mRNA-binding protein 1 OS=Rattus norvegicus GN=Igf2bp1 PE=1 SV=1 | 10 | 322 | 6.0E-16 |
| sp|O88477|IF2B1_MOUSE | Insulin-like growth factor 2 mRNA-binding protein 1 OS=Mus musculus GN=Igf2bp1 PE=1 SV=1 | 18 | 322 | 7.0E-16 |
| sp|Q08CK7|IF2B1_DANRE | Insulin-like growth factor 2 mRNA-binding protein 1 OS=Danio rerio GN=igf2bp1 PE=1 SV=1 | 24 | 322 | 2.0E-15 |
| sp|Q9LZ82|BTR1_ARATH | Protein BTR1 OS=Arabidopsis thaliana GN=BTR1 PE=1 SV=1 | 2 | 325 | 3.0E-15 |
| sp|Q3T0D0|HNRPK_BOVIN | Heterogeneous nuclear ribonucleoprotein K OS=Bos taurus GN=HNRNPK PE=2 SV=1 | 25 | 180 | 2.0E-14 |
| sp|O19049|HNRPK_RABIT | Heterogeneous nuclear ribonucleoprotein K OS=Oryctolagus cuniculus GN=HNRNPK PE=2 SV=1 | 25 | 180 | 6.0E-14 |
| sp|Q5ZIQ3|HNRPK_CHICK | Heterogeneous nuclear ribonucleoprotein K OS=Gallus gallus GN=HNRNPK PE=2 SV=1 | 25 | 180 | 6.0E-14 |
| sp|P61980|HNRPK_RAT | Heterogeneous nuclear ribonucleoprotein K OS=Rattus norvegicus GN=Hnrnpk PE=1 SV=1 | 25 | 180 | 6.0E-14 |
| sp|P61979|HNRPK_MOUSE | Heterogeneous nuclear ribonucleoprotein K OS=Mus musculus GN=Hnrnpk PE=1 SV=1 | 25 | 180 | 6.0E-14 |
| sp|P61978|HNRPK_HUMAN | Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=1 SV=1 | 25 | 180 | 6.0E-14 |
| sp|Q4R4M6|HNRPK_MACFA | Heterogeneous nuclear ribonucleoprotein K OS=Macaca fascicularis GN=HNRNPK PE=2 SV=1 | 25 | 180 | 7.0E-14 |
| sp|Q5R5H8|HNRPK_PONAB | Heterogeneous nuclear ribonucleoprotein K OS=Pongo abelii GN=HNRNPK PE=2 SV=1 | 25 | 180 | 7.0E-14 |
| sp|Q8UVD9|FUBP2_CHICK | Far upstream element-binding protein 2 OS=Gallus gallus GN=KHSRP PE=1 SV=1 | 10 | 321 | 7.0E-14 |
| sp|Q9SR13|FLK_ARATH | Flowering locus K homology domain OS=Arabidopsis thaliana GN=FLK PE=1 SV=1 | 27 | 317 | 6.0E-13 |
| sp|Q9UNW9|NOVA2_HUMAN | RNA-binding protein Nova-2 OS=Homo sapiens GN=NOVA2 PE=1 SV=1 | 27 | 181 | 2.0E-12 |
| sp|Q2PFW9|NOVA1_MACFA | RNA-binding protein Nova-1 OS=Macaca fascicularis GN=NOVA1 PE=2 SV=1 | 8 | 185 | 2.0E-12 |
| sp|Q80WA4|NOVA1_RAT | RNA-binding protein Nova-1 (Fragment) OS=Rattus norvegicus GN=Nova1 PE=2 SV=1 | 8 | 185 | 3.0E-12 |
| sp|Q99PF5|FUBP2_RAT | Far upstream element-binding protein 2 OS=Rattus norvegicus GN=Khsrp PE=1 SV=1 | 15 | 321 | 2.0E-11 |
| sp|Q92945|FUBP2_HUMAN | Far upstream element-binding protein 2 OS=Homo sapiens GN=KHSRP PE=1 SV=4 | 15 | 321 | 2.0E-11 |
| sp|Q3U0V1|FUBP2_MOUSE | Far upstream element-binding protein 2 OS=Mus musculus GN=Khsrp PE=1 SV=2 | 15 | 321 | 2.0E-11 |
| sp|Q9JKN6|NOVA1_MOUSE | RNA-binding protein Nova-1 OS=Mus musculus GN=Nova1 PE=1 SV=2 | 8 | 185 | 4.0E-11 |
| sp|P51513|NOVA1_HUMAN | RNA-binding protein Nova-1 OS=Homo sapiens GN=NOVA1 PE=1 SV=1 | 8 | 185 | 7.0E-11 |
| sp|Q96I24|FUBP3_HUMAN | Far upstream element-binding protein 3 OS=Homo sapiens GN=FUBP3 PE=1 SV=2 | 17 | 315 | 4.0E-10 |
| sp|Q9JKN6|NOVA1_MOUSE | RNA-binding protein Nova-1 OS=Mus musculus GN=Nova1 PE=1 SV=2 | 112 | 322 | 9.0E-10 |
| sp|P51513|NOVA1_HUMAN | RNA-binding protein Nova-1 OS=Homo sapiens GN=NOVA1 PE=1 SV=1 | 112 | 322 | 3.0E-09 |
| sp|Q15366|PCBP2_HUMAN | Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=1 SV=1 | 248 | 322 | 4.0E-09 |
| sp|Q15366|PCBP2_HUMAN | Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=1 SV=1 | 111 | 307 | 5.0E-09 |
| sp|Q9SZH4|PEP_ARATH | RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana GN=PEP PE=2 SV=1 | 27 | 291 | 6.0E-09 |
| sp|Q96AE4|FUBP1_HUMAN | Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1 PE=1 SV=3 | 15 | 321 | 1.0E-08 |
| sp|Q91WJ8|FUBP1_MOUSE | Far upstream element-binding protein 1 OS=Mus musculus GN=Fubp1 PE=1 SV=1 | 15 | 321 | 6.0E-08 |
| sp|Q91WJ8|FUBP1_MOUSE | Far upstream element-binding protein 1 OS=Mus musculus GN=Fubp1 PE=1 SV=1 | 215 | 315 | 4.0E-07 |
| sp|Q9Y2W6|TDRKH_HUMAN | Tudor and KH domain-containing protein OS=Homo sapiens GN=TDRKH PE=1 SV=2 | 22 | 148 | 1.0E-06 |
| sp|Q32PX7|FUBP1_RAT | Far upstream element-binding protein 1 OS=Rattus norvegicus GN=Fubp1 PE=1 SV=1 | 215 | 315 | 2.0E-06 |
| sp|Q80VL1|TDRKH_MOUSE | Tudor and KH domain-containing protein OS=Mus musculus GN=Tdrkh PE=1 SV=1 | 22 | 148 | 5.0E-06 |
| sp|Q96AE4|FUBP1_HUMAN | Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1 PE=1 SV=3 | 215 | 315 | 6.0E-06 |
| sp|Q8UVD9|FUBP2_CHICK | Far upstream element-binding protein 2 OS=Gallus gallus GN=KHSRP PE=1 SV=1 | 228 | 315 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 14 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 257.72 | 151.37 | 364.08 |
| Initials | Initials knots | 192.56 | 114.74 | 270.37 |
| Pileal_Stipeal_center | Stage I stipe center | 360.49 | 206.30 | 514.68 |
| Pileal_Stipeal_shell | Stage I stipe shell | 413.49 | 231.04 | 595.93 |
| DIF_stipe_center | Stage II stipe center | 365.77 | 208.28 | 523.26 |
| DIF_stipe_shell | Stage II stipe shell | 285.35 | 165.49 | 405.20 |
| DIF_stipe_skin | Stage II stipe skin | 291.73 | 169.56 | 413.90 |
| DIF_cap_skin | Stage II cap skin | 418.92 | 235.14 | 602.70 |
| DIF_cap_tissue | Stage II cap tissue | 467.78 | 258.04 | 677.53 |
| DIF_gill_tissue | Stage II gill tissue | 501.37 | 276.01 | 726.73 |
| YFB_stipe_center | Young fruiting body stipe center | 314.52 | 182.63 | 446.42 |
| YFB_stipe_shell | Young fruiting body stipe shell | 268.82 | 157.58 | 380.06 |
| YFB_stipe_skin | Young fruiting body stipe skin | 273.40 | 158.73 | 388.06 |
| YFB_cap_skin | Young fruiting body cap skin | 334.80 | 192.46 | 477.14 |
| YFB_cap_tissue | Young fruiting body cap tissue | 391.67 | 222.49 | 560.85 |
| YFB_gill_tissue | Young fruiting body gill tissue | 314.21 | 177.55 | 450.86 |
| YFB_veil | Young fruiting body veil | 413.86 | 229.51 | 598.22 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.013782 | yes |
| Casing | YFB_stipe_center | 0.606857 | no |
| Casing | YFB_stipe_shell | 0.940772 | no |
| Casing | YFB_stipe_skin | 0.915440 | no |
| Casing | YFB_cap_skin | 0.461664 | no |
| Casing | YFB_cap_tissue | 0.165026 | no |
| Casing | YFB_gill_tissue | 0.619350 | no |
| Casing | YFB_veil | 0.102830 | no |
| Casing | Initials | 0.378802 | no |
| Casing | Pileal_Stipeal_center | 0.306903 | no |
| Casing | Pileal_Stipeal_shell | 0.110231 | no |
| Casing | DIF_stipe_center | 0.272537 | no |
| Casing | DIF_stipe_shell | 0.836219 | no |
| Casing | DIF_stipe_skin | 0.786988 | no |
| Casing | DIF_cap_skin | 0.105226 | no |
| Casing | DIF_cap_tissue | 0.039612 | yes |
| DIF_gill_tissue | YFB_stipe_center | 0.126752 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.029890 | yes |
| DIF_gill_tissue | YFB_stipe_skin | 0.036455 | yes |
| DIF_gill_tissue | YFB_cap_skin | 0.207523 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.518213 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.131265 | no |
| DIF_gill_tissue | YFB_veil | 0.654234 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.714120 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.755823 | no |
| YFB_stipe_center | YFB_cap_skin | 0.905555 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.567388 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.998365 | no |
| YFB_stipe_center | YFB_veil | 0.438646 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.977561 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.563425 | no |
| YFB_stipe_shell | YFB_cap_tissue | 0.229801 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.719950 | no |
| YFB_stipe_shell | YFB_veil | 0.150982 | no |
| YFB_stipe_skin | YFB_cap_skin | 0.610993 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.263495 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.764728 | no |
| YFB_stipe_skin | YFB_veil | 0.181205 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.715369 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.908153 | no |
| YFB_cap_skin | YFB_veil | 0.586018 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.574075 | no |
| YFB_cap_tissue | YFB_veil | 0.924075 | no |
| YFB_gill_tissue | YFB_veil | 0.435291 | no |
| Initials | DIF_gill_tissue | 0.000613 | yes |
| Initials | YFB_stipe_center | 0.081756 | no |
| Initials | YFB_stipe_shell | 0.287011 | no |
| Initials | YFB_stipe_skin | 0.263398 | no |
| Initials | YFB_cap_skin | 0.042041 | yes |
| Initials | YFB_cap_tissue | 0.008457 | yes |
| Initials | YFB_gill_tissue | 0.089469 | no |
| Initials | YFB_veil | 0.002525 | yes |
| Initials | Pileal_Stipeal_center | 0.019442 | yes |
| Initials | Pileal_Stipeal_shell | 0.002951 | yes |
| Initials | DIF_stipe_center | 0.015529 | yes |
| Initials | DIF_stipe_shell | 0.195326 | no |
| Initials | DIF_stipe_skin | 0.160642 | no |
| Initials | DIF_cap_skin | 0.003365 | yes |
| Initials | DIF_cap_tissue | 0.001625 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.347312 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.761547 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.397915 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.447122 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.887475 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.872098 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.766629 | no |
| Pileal_Stipeal_center | YFB_veil | 0.765891 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.767794 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.980041 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.540338 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.588916 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.745010 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.502265 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.659627 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.446701 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.160121 | no |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.189511 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.602939 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.921810 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.455186 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.998527 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.798463 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.260813 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.292699 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.982681 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.803423 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.375672 | no |
| DIF_stipe_center | YFB_stipe_center | 0.729320 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.365801 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.414251 | no |
| DIF_stipe_center | YFB_cap_skin | 0.861064 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.897471 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.736021 | no |
| DIF_stipe_center | YFB_veil | 0.797440 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.506269 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.556534 | no |
| DIF_stipe_center | DIF_cap_skin | 0.775599 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.532801 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.048212 | yes |
| DIF_stipe_shell | YFB_stipe_center | 0.842982 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.914616 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.941632 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.709302 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.343444 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.850896 | no |
| DIF_stipe_shell | YFB_veil | 0.244478 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.969790 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.236900 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.100731 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.063183 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.883522 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.873281 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.905911 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.757917 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.394192 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.889625 | no |
| DIF_stipe_skin | YFB_veil | 0.287390 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.276718 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.130962 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.688462 | no |
| DIF_cap_skin | YFB_stipe_center | 0.418605 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.142929 | no |
| DIF_cap_skin | YFB_stipe_skin | 0.172692 | no |
| DIF_cap_skin | YFB_cap_skin | 0.570538 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.900614 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.427938 | no |
| DIF_cap_skin | YFB_veil | 0.983392 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.827289 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.905761 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.219303 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.065276 | no |
| DIF_cap_tissue | YFB_stipe_skin | 0.075556 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.338140 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.685591 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.224247 | no |
| DIF_cap_tissue | YFB_veil | 0.809280 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|007330 MPSDQAPSPPPSRSPSHSPAPQDSLTLRALVSTKDAGVIIGKAGKNVADLREQTGVKAGVSKVIPGVHERVLTVS GSVDAVAKAYTLIITQLVTASPASPVVSSPSTIHTSIRLLISHNLMGTIIGRNGLKIKAIQDNSGARMVASKEML PQSTERIVEVQGAPEAIGRAVEEIGKCLLEDWERGLGTVLFHPGTVDDRSGGNRRQGSYSASPQYGAQRRANGDG NVRARASPPASPTHSPISSQPPANLRTQNISIPSDMVGCIIGRSGTKITEIRRLSGSKISIAKAPHDETGERMFT IVGTPEANEKALFLLYNQLESEKERRVGREAQQQQELQQE* |
| Coding | >AgabiH97|007330 ATGCCCTCAGACCAAGCCCCCTCTCCCCCGCCCTCCCGTTCCCCCTCCCACTCCCCCGCGCCCCAGGACTCCCTC ACCCTCCGCGCCCTCGTCAGCACAAAGGACGCAGGTGTCATCATCGGCAAGGCCGGCAAAAACGTCGCTGACCTG CGCGAACAGACTGGCGTCAAGGCCGGCGTCAGCAAGGTCATCCCCGGCGTCCACGAACGCGTTCTCACCGTCTCC GGCTCTGTCGACGCGGTTGCAAAGGCCTATACTCTTATCATCACTCAGCTCGTCACTGCTAGCCCTGCCTCTCCC GTCGTCTCGTCCCCCTCCACCATTCACACTTCCATCCGCCTCCTTATCTCCCATAATCTTATGGGCACCATCATA GGTCGCAACGGCCTCAAAATCAAGGCCATTCAAGACAACTCTGGCGCACGCATGGTAGCCTCCAAAGAAATGCTC CCTCAATCAACCGAGCGCATCGTTGAGGTTCAGGGTGCTCCCGAGGCGATTGGACGCGCAGTCGAAGAAATCGGA AAATGCTTGCTTGAGGACTGGGAACGAGGCCTTGGCACTGTTCTTTTCCATCCAGGCACCGTTGACGACCGCTCA GGGGGCAATCGTCGTCAAGGTAGTTATTCCGCCTCTCCACAGTACGGCGCCCAGCGCCGTGCTAATGGCGACGGC AATGTCCGTGCTCGCGCTTCACCTCCTGCTTCACCTACTCACTCCCCAATCTCCTCCCAACCGCCGGCCAATCTG CGGACGCAGAACATATCGATTCCCTCTGACATGGTCGGGTGCATCATTGGACGTAGTGGCACTAAAATCACCGAG ATCAGACGACTATCCGGTTCCAAAATCTCGATTGCCAAAGCTCCACACGACGAAACAGGCGAGCGTATGTTCACG ATAGTCGGCACTCCTGAGGCAAATGAGAAAGCTTTGTTCCTGCTTTACAACCAACTCGAAAGCGAGAAGGAGAGG AGAGTTGGAAGAGAGGCTCAGCAACAACAGGAACTCCAACAGGAATGA |
| Transcript | >AgabiH97|007330 ATGCCCTCAGACCAAGCCCCCTCTCCCCCGCCCTCCCGTTCCCCCTCCCACTCCCCCGCGCCCCAGGACTCCCTC ACCCTCCGCGCCCTCGTCAGCACAAAGGACGCAGGTGTCATCATCGGCAAGGCCGGCAAAAACGTCGCTGACCTG CGCGAACAGACTGGCGTCAAGGCCGGCGTCAGCAAGGTCATCCCCGGCGTCCACGAACGCGTTCTCACCGTCTCC GGCTCTGTCGACGCGGTTGCAAAGGCCTATACTCTTATCATCACTCAGCTCGTCACTGCTAGCCCTGCCTCTCCC GTCGTCTCGTCCCCCTCCACCATTCACACTTCCATCCGCCTCCTTATCTCCCATAATCTTATGGGCACCATCATA GGTCGCAACGGCCTCAAAATCAAGGCCATTCAAGACAACTCTGGCGCACGCATGGTAGCCTCCAAAGAAATGCTC CCTCAATCAACCGAGCGCATCGTTGAGGTTCAGGGTGCTCCCGAGGCGATTGGACGCGCAGTCGAAGAAATCGGA AAATGCTTGCTTGAGGACTGGGAACGAGGCCTTGGCACTGTTCTTTTCCATCCAGGCACCGTTGACGACCGCTCA GGGGGCAATCGTCGTCAAGGTAGTTATTCCGCCTCTCCACAGTACGGCGCCCAGCGCCGTGCTAATGGCGACGGC AATGTCCGTGCTCGCGCTTCACCTCCTGCTTCACCTACTCACTCCCCAATCTCCTCCCAACCGCCGGCCAATCTG CGGACGCAGAACATATCGATTCCCTCTGACATGGTCGGGTGCATCATTGGACGTAGTGGCACTAAAATCACCGAG ATCAGACGACTATCCGGTTCCAAAATCTCGATTGCCAAAGCTCCACACGACGAAACAGGCGAGCGTATGTTCACG ATAGTCGGCACTCCTGAGGCAAATGAGAAAGCTTTGTTCCTGCTTTACAACCAACTCGAAAGCGAGAAGGAGAGG AGAGTTGGAAGAGAGGCTCAGCAACAACAGGAACTCCAACAGGAATGA |
| Gene | >AgabiH97|007330 ATGCCCTCAGACCAAGGTTAGTCCCCTCCCCCCATCCCCCGCCCCGCGTCCTCACCGTCCCGCCCAGCCCCCTCT CCCCCGCCCTCCCGTTCCCCCTCCCACTCCCCCGCGCCCCAGGACTCCCTCACCCTCCGCGCCCTCGTCAGCACA AAGGACGCAGGTGTCATCATCGGCAAGGCCGGCAAAAACGTCGCTGACCTGCGCGAACAGACTGGCGTCAAGGCC GGCGTCAGCAAGGTCATCCCCGGCGTCCACGAACGCGTTCTCACCGTCTCCGGCTCTGTCGACGCGGTTGCAAAG GCGCGTCCTTGTTTTCTTTGTTCACTTTGATCGCTCCCTGACTTCATCCCCAGGCCTATACTCTTATCATCACTC AGCTCGTCACTGCTAGCCCTGCCTCTCCCGTCGTCTCGTCCCCCTCCACCATTCACACTTCCATCCGCCTCCTTA TCTCCCATAATCTTATGGGCACCATCATAGGTCGCAACGGCCTCAAAATCAAGGCCATTCAAGACAACTCTGGCG CACGCATGGTAGCCTCCAAAGAAATGCTCCCTCAATCAACCGAGCGCATCGTTGAGGTTCAGGGTGCTCCCGAGG CGATTGGACGCGCAGTCGAAGAAATCGGAAAATGCTTGCTTGAGGACTGGGAACGAGGCCTTGGCACTGTTCTTT TCCATCCAGGCACCGTTGACGACCGCTCAGGGGGCAATCGTCGTCAAGGTAGTTATTCCGCCTCTCCACAGTACG GCGCCCAGCGCCGTGCTAATGGCGACGGCAATGTCCGTGCTCGCGCTTCACCTCCTGCTTCACCTACTCACTCCC CAATCTCCTCCCAACCGCCGGCCAATCTGCGGACGCAGAACATATCGATTCCCTCTGACATGGTCGGGTGCATCA TTGGACGTAGTGGCACTAAAATCACCGAGATCAGACGACTATCCGGTTCCAAAATCTCGATTGCCAAAGCTCCAC ACGACGAAACAGGCGAGCGTATGTTCACGATAGTCGGCACTCCTGAGGCAAATGAGAAAGCTTTGTTCCTGCTTT ACAACCAACTCGAAAGCGAGAAGGAGAGGAGAGTTGGAAGAGAGGCTCAGCAACAACAGGAACTCCAACAGGAAT GA |