Protein ID | AgabiH97|006830 |
Gene name | |
Location | scaffold_1:1653763..1656913 |
Strand | + |
Gene length (bp) | 3150 |
Transcript length (bp) | 2589 |
Coding sequence length (bp) | 2589 |
Protein length (aa) | 863 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF02278 | Lyase_8 | Polysaccharide lyase family 8, super-sandwich domain | 8.0E-70 | 486 | 734 |
PF08124 | Lyase_8_N | Polysaccharide lyase family 8, N terminal alpha-helical domain | 3.6E-15 | 248 | 404 |
PF02884 | Lyase_8_C | Polysaccharide lyase family 8, C-terminal beta-sandwich domain | 4.9E-13 | 751 | 821 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q59288|CSLA_PEDHD | Chondroitinase-AC OS=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) GN=cslA PE=1 SV=1 | 128 | 858 | 3.0E-40 |
sp|Q9AQS0|XANLY_BACGL | Xanthan lyase OS=Bacillus sp. (strain GL1) GN=xly PE=1 SV=1 | 185 | 774 | 6.0E-11 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005576 | extracellular region | Yes |
GO:0016829 | lyase activity | Yes |
GO:0005575 | cellular_component | No |
GO:0003674 | molecular_function | No |
GO:0003824 | catalytic activity | No |
GO:0110165 | cellular anatomical entity | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
Yes | 1 - 31 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >AgabiH97|006830 MKPLFNLPRTLFFHVSLFLSLLACPDLVSSASTSTSSTSLSSTHGIVVPSGSSSSRVLSSLTTSHVQSASSSLST RISQTSATAPNSSKMTTIATSTFVNPSLNSSATATSTATVTTPSDPAILEEIEMLRTQVIDIIIGPLGQASAIPA WLTSLGPDGKWPDSEVDYTTGCPARRANWPAQTHWQRILVMAAAWHGGLQGGENFVGDENLRKKTLLAIDYWFGR DLTNLECMINGGTPSCPCDNPDNTLWNTNWFSNVILIPNLVGSSCILLNETLTAAQLDHCTKITNRSYDLFLRPF NEVNFLTGANVLDVAKIGIDGALLNPNITQITDAYRRIHEEVVIQPAIKADGIRPDGSFGQHGGVLYNGNYGKDF TNDIVAFEIEAAETRFAANSESRSALALLFEGDHWMIFRNTVTGVLHWDFSALGRFISFPVIDTQATGSIKLNLT QIDVLGRLWDQPALVQFAESLSEHDMNANAGRLIGNRMFYNNDYMVHRGPNYVTTVKMYSTRTKYGECLNSQNIL GFHLSDGAVYTYLKGNEYEDIAVAWDWNLIPGITTDYEATKLTCSSGVTGIEDFVGGVSNDDTGIAVMRYTNPLT GDLNWQKAWFFLEGDVQHTMISNITSTSDSPVFSVLDQRLHDDAIFMDDGEPFRANDGPTPLSSATLWHGGVGYD LSGLGDDDILHVEVGPKSGNWSAIGTSTEPPSTFDLFAAWIEHGTPASSISYSTFPGTSFTGFMGKQAKLRLQSV VNDGSVGAIYDEEHQTVMVVFWEEDGGSVTIRPPRLAPITISADGNIALIYRFSDAAVYVSDPSQTLTEVQVNLE LGTGWKPPFWGFHRSKDFSIFLPTGGLAGSSVRQPLN* |
Coding | >AgabiH97|006830 ATGAAGCCTCTCTTCAATCTCCCTCGTACTCTCTTTTTCCACGTCTCTTTGTTCCTTTCCCTCTTGGCGTGCCCC GATCTGGTTTCAAGCGCGTCCACCTCTACATCATCCACCTCTTTATCCTCAACTCATGGCATTGTTGTGCCATCC GGTTCTTCATCATCTCGGGTGCTTTCCTCGCTGACCACCTCACATGTACAATCTGCATCGTCCTCTTTGAGCACT CGTATATCGCAGACATCTGCTACCGCCCCCAATTCATCCAAGATGACGACTATAGCCACTTCAACCTTTGTCAAT CCTTCTTTGAATTCATCTGCCACAGCAACATCCACTGCTACGGTGACTACGCCTTCCGATCCCGCTATACTGGAA GAAATAGAAATGTTGCGAACCCAAGTAATCGACATTATCATTGGCCCACTTGGTCAAGCGAGTGCAATACCTGCT TGGCTGACATCCCTGGGTCCTGATGGCAAATGGCCTGATAGTGAAGTTGACTATACAACTGGCTGCCCTGCCCGC CGGGCCAACTGGCCAGCCCAGACACATTGGCAGCGTATTCTCGTGATGGCAGCTGCATGGCACGGCGGATTACAA GGAGGGGAAAACTTCGTCGGAGATGAAAATCTCCGTAAGAAAACACTACTGGCTATAGACTATTGGTTCGGGCGT GATCTCACCAATCTTGAATGCATGATCAACGGTGGTACTCCGTCTTGTCCATGTGATAATCCTGATAATACCCTG TGGAACACCAACTGGTTTTCTAATGTTATACTGATTCCGAACCTCGTTGGGTCATCATGCATACTGTTGAACGAG ACTTTGACCGCGGCACAGTTGGATCACTGTACAAAAATAACCAACCGCTCATATGATCTCTTCTTGCGCCCATTT AATGAAGTCAACTTCCTGACAGGTGCAAATGTTTTGGATGTCGCCAAAATTGGAATTGATGGGGCTCTACTCAAC CCCAATATCACACAAATAACCGATGCATATCGTCGCATACATGAAGAGGTTGTAATTCAACCAGCTATCAAAGCC GATGGTATCAGACCTGATGGGTCTTTCGGTCAGCATGGTGGTGTTCTCTACAACGGTAACTACGGCAAGGACTTT ACAAACGACATCGTGGCCTTTGAAATTGAGGCGGCCGAGACACGTTTTGCTGCAAATTCCGAGTCTCGATCCGCT CTTGCTCTTCTCTTCGAAGGTGACCATTGGATGATCTTTCGCAACACCGTCACGGGGGTGCTACACTGGGATTTT TCTGCTCTTGGGCGATTTATCAGCTTTCCTGTCATTGATACTCAGGCCACCGGAAGTATCAAACTAAATCTTACT CAGATTGATGTCCTTGGACGGCTTTGGGATCAACCGGCTCTTGTCCAATTTGCCGAAAGTCTTTCTGAACACGAC ATGAATGCCAATGCAGGTCGGCTCATCGGCAATCGTATGTTCTACAACAACGACTACATGGTTCACCGTGGCCCG AACTACGTTACTACTGTTAAGATGTATTCCACAAGAACAAAGTATGGTGAATGTCTAAACTCTCAGAATATATTG GGTTTCCATCTCTCAGACGGAGCTGTATACACCTATTTGAAGGGCAATGAGTATGAAGATATTGCTGTCGCCTGG GACTGGAACCTTATTCCGGGAATTACTACCGACTATGAAGCGACCAAACTTACTTGTTCCAGCGGCGTCACTGGG ATTGAAGATTTCGTTGGTGGTGTGTCTAATGACGATACTGGTATCGCCGTCATGCGCTACACGAATCCCTTGACT GGCGACTTGAATTGGCAAAAAGCGTGGTTTTTCCTCGAGGGCGACGTCCAACACACCATGATTTCCAATATCACA TCCACATCCGACAGCCCTGTCTTCTCCGTACTTGACCAACGTCTCCATGATGACGCTATTTTCATGGATGACGGT GAACCGTTCAGAGCCAATGATGGACCTACTCCTTTGTCTTCAGCGACGCTTTGGCATGGCGGGGTAGGTTATGAC CTGTCGGGCCTTGGAGATGATGACATCCTCCACGTTGAGGTTGGTCCAAAGTCAGGGAACTGGTCAGCGATCGGT ACTTCAACTGAACCACCATCAACATTTGACCTCTTCGCTGCCTGGATTGAACACGGAACGCCCGCATCATCTATT TCCTATTCCACATTCCCCGGTACCAGTTTCACTGGTTTCATGGGCAAGCAGGCCAAGCTTCGTTTGCAATCTGTT GTGAATGACGGGAGCGTGGGGGCCATATACGACGAGGAACACCAAACAGTAATGGTTGTGTTTTGGGAAGAAGAT GGTGGTAGTGTTACAATCAGACCCCCGAGATTGGCCCCGATCACTATTAGCGCGGACGGCAACATAGCTCTGATT TATCGGTTTTCAGACGCTGCAGTTTATGTGTCAGATCCTTCTCAAACACTTACGGAAGTACAAGTCAATTTGGAA TTGGGTACGGGCTGGAAGCCACCATTCTGGGGTTTCCACAGGTCCAAAGACTTCAGTATATTCCTTCCAACGGGT GGCCTAGCAGGTAGTAGCGTGCGCCAGCCATTGAATTAG |
Transcript | >AgabiH97|006830 ATGAAGCCTCTCTTCAATCTCCCTCGTACTCTCTTTTTCCACGTCTCTTTGTTCCTTTCCCTCTTGGCGTGCCCC GATCTGGTTTCAAGCGCGTCCACCTCTACATCATCCACCTCTTTATCCTCAACTCATGGCATTGTTGTGCCATCC GGTTCTTCATCATCTCGGGTGCTTTCCTCGCTGACCACCTCACATGTACAATCTGCATCGTCCTCTTTGAGCACT CGTATATCGCAGACATCTGCTACCGCCCCCAATTCATCCAAGATGACGACTATAGCCACTTCAACCTTTGTCAAT CCTTCTTTGAATTCATCTGCCACAGCAACATCCACTGCTACGGTGACTACGCCTTCCGATCCCGCTATACTGGAA GAAATAGAAATGTTGCGAACCCAAGTAATCGACATTATCATTGGCCCACTTGGTCAAGCGAGTGCAATACCTGCT TGGCTGACATCCCTGGGTCCTGATGGCAAATGGCCTGATAGTGAAGTTGACTATACAACTGGCTGCCCTGCCCGC CGGGCCAACTGGCCAGCCCAGACACATTGGCAGCGTATTCTCGTGATGGCAGCTGCATGGCACGGCGGATTACAA GGAGGGGAAAACTTCGTCGGAGATGAAAATCTCCGTAAGAAAACACTACTGGCTATAGACTATTGGTTCGGGCGT GATCTCACCAATCTTGAATGCATGATCAACGGTGGTACTCCGTCTTGTCCATGTGATAATCCTGATAATACCCTG TGGAACACCAACTGGTTTTCTAATGTTATACTGATTCCGAACCTCGTTGGGTCATCATGCATACTGTTGAACGAG ACTTTGACCGCGGCACAGTTGGATCACTGTACAAAAATAACCAACCGCTCATATGATCTCTTCTTGCGCCCATTT AATGAAGTCAACTTCCTGACAGGTGCAAATGTTTTGGATGTCGCCAAAATTGGAATTGATGGGGCTCTACTCAAC CCCAATATCACACAAATAACCGATGCATATCGTCGCATACATGAAGAGGTTGTAATTCAACCAGCTATCAAAGCC GATGGTATCAGACCTGATGGGTCTTTCGGTCAGCATGGTGGTGTTCTCTACAACGGTAACTACGGCAAGGACTTT ACAAACGACATCGTGGCCTTTGAAATTGAGGCGGCCGAGACACGTTTTGCTGCAAATTCCGAGTCTCGATCCGCT CTTGCTCTTCTCTTCGAAGGTGACCATTGGATGATCTTTCGCAACACCGTCACGGGGGTGCTACACTGGGATTTT TCTGCTCTTGGGCGATTTATCAGCTTTCCTGTCATTGATACTCAGGCCACCGGAAGTATCAAACTAAATCTTACT CAGATTGATGTCCTTGGACGGCTTTGGGATCAACCGGCTCTTGTCCAATTTGCCGAAAGTCTTTCTGAACACGAC ATGAATGCCAATGCAGGTCGGCTCATCGGCAATCGTATGTTCTACAACAACGACTACATGGTTCACCGTGGCCCG AACTACGTTACTACTGTTAAGATGTATTCCACAAGAACAAAGTATGGTGAATGTCTAAACTCTCAGAATATATTG GGTTTCCATCTCTCAGACGGAGCTGTATACACCTATTTGAAGGGCAATGAGTATGAAGATATTGCTGTCGCCTGG GACTGGAACCTTATTCCGGGAATTACTACCGACTATGAAGCGACCAAACTTACTTGTTCCAGCGGCGTCACTGGG ATTGAAGATTTCGTTGGTGGTGTGTCTAATGACGATACTGGTATCGCCGTCATGCGCTACACGAATCCCTTGACT GGCGACTTGAATTGGCAAAAAGCGTGGTTTTTCCTCGAGGGCGACGTCCAACACACCATGATTTCCAATATCACA TCCACATCCGACAGCCCTGTCTTCTCCGTACTTGACCAACGTCTCCATGATGACGCTATTTTCATGGATGACGGT GAACCGTTCAGAGCCAATGATGGACCTACTCCTTTGTCTTCAGCGACGCTTTGGCATGGCGGGGTAGGTTATGAC CTGTCGGGCCTTGGAGATGATGACATCCTCCACGTTGAGGTTGGTCCAAAGTCAGGGAACTGGTCAGCGATCGGT ACTTCAACTGAACCACCATCAACATTTGACCTCTTCGCTGCCTGGATTGAACACGGAACGCCCGCATCATCTATT TCCTATTCCACATTCCCCGGTACCAGTTTCACTGGTTTCATGGGCAAGCAGGCCAAGCTTCGTTTGCAATCTGTT GTGAATGACGGGAGCGTGGGGGCCATATACGACGAGGAACACCAAACAGTAATGGTTGTGTTTTGGGAAGAAGAT GGTGGTAGTGTTACAATCAGACCCCCGAGATTGGCCCCGATCACTATTAGCGCGGACGGCAACATAGCTCTGATT TATCGGTTTTCAGACGCTGCAGTTTATGTGTCAGATCCTTCTCAAACACTTACGGAAGTACAAGTCAATTTGGAA TTGGGTACGGGCTGGAAGCCACCATTCTGGGGTTTCCACAGGTCCAAAGACTTCAGTATATTCCTTCCAACGGGT GGCCTAGCAGGTAGTAGCGTGCGCCAGCCATTGAATTAG |
Gene | >AgabiH97|006830 ATGAAGCCTCTCTTCAATCTCCCTCGTACTCTCTTTTTCCACGTCTCTTTGTTCCTTTCCCTCTTGGCGTGCCCC GATCTGGTTTCAAGCGCGTCCACCTCTACATCATCCACCTCTTTATCCTCAACTCATGGCATTGTTGTGCCATCC GGTTCTTCATCATCTCGGGTGCTTTCCTCGCTGACCACCTCACATGTACAATCTGCATCGTCCTCTTTGAGCACT CGTATATCGCAGACATCTGCTACCGCCCCCAATTCATCCAAGATGACGACTATAGCCACTTCAACCTTTGTCAAT CCTTCTTTGAATTCATCTGCCACAGCAACATCCACTGCTACGGTGACTACGCCTTCCGATCCCGCTATACTGGAA GAAATAGAAATGTTGCGAACCCAAGTAATCGACATTATCATTGGCCCACTTGGTCAAGCGAGTGCAATACCTGCT TGGTTTGTGTTGAACATTCTAACCAGGTCTCGAACAGCAATAGCTAATCCACGCTAGGCTGACATCCCTGGGTCC TGATGGCAAATGGCCTGATAGTGAAGTTGACTATACAACTGGCTGCCCTGCCCGCCGGGCCAACTGGCCAGCCCA GACACATTGGCAGCGTATTCGTGAGTTCTTGCTTGGGGCGATCGTGGAAAAGCCTTCTCATGAATTTTAGTCGTG ATGGCAGCTGCATGGCACGGCGGATTACAAGGAGGGGAAAACTTCGTCGGAGATGAAAATCTCCGTAAGAAAACA CTACTGGCTATAGACTATTGGTTCGGGCGTGATCTCACCAATCTTGAATGCATGATCAACGGTGGTACTCCGTCT TGTCCATGTGATAATCCTGATAATACCCTGTGGTATGAAGATGCTGCATTGAAATAAGGGCCACTACTGAAATAT TTTTTCAAGGAACACCAACTGGTTTTCTAATGTTCGTCGCTGTCTTCTGTTTAGCACCCATCACCAATTGATTGT ACTAGGTTATACTGATTCCGAACCTCGTTGGGTCATCATGCATACTGTTGAACGAGACTTTGACCGCGGCACAGT TGGATCACTGTACAAAAATAACCAACCGCTCATATGATCTCTTCTTGCGCCCATTTAATGAAGTCAACTTCCTGA CAGGTGCAAATGTTTTGGATGTCGCCAAAATTGGAATTGATGGGGCTCTACTCAACCCCAATATCACACAAATAA CCGATGCATATCGTCGCATACATGAAGAGGTTGTAATTCAACCAGCTATCAAAGCCGATGGTATCAGACCTGATG GGTCTTTCGGTGCGATATCATCTGGATTCTGATTCCTTGTCTCATTTCTGTATTTCAGGTCAGCATGGTGGTGTT CTCTACAACGGTAACTACGGTAAGTGGGGTTGATTGAGTTCATAATATGTTTCGTGTGCTCAGGTTTTTTGCAGG CAAGGACTTGTGAGTGGAGAATTGAAATTGAGGAACTCTCATATTGATTCTTCGAAGTACAAACGACATCGTGGC CTTTGAAATTGAGGCGGCCGAGACACGTTTTGCTGCAAATTCCGAGTCTCGATCCGCTCTTGCTCTTCTCTTCGA AGGTGACCATTGGATGATCTTTCGCAACACCGTCACGGGGGTGCTACACTGGGATTTTGTGAGTACCTCACTAAT CTCATTTGACTCTTACTCAGTCAGGTCTAGTCTGCTCTTGGGCGATTTATCAGCTTTCCTGTCATTGATACTCAG TACGTTCTACTCTACTTTTTCCTATCAGATAAATGTAAAACCATCTCTTTAGGGCCACCGGAAGTATCAAACTAA ATCTTACTCAGATTGATGTCCTTGGACGGCTTTGGGATCAACCGGCTCTTGTCCAATTTGCCGAAAGTCTTTCTG AACACGACATGAATGCCAATGCAGGTCGGCTCATCGGCAATCGTATGTTCTACAACAACGACTACATGGTTAGCT TCCTCGCCTCCAAGCCTAGATTCTGATTTATAGTTCGTCAGGTTCACCGTGGCCCGAACTACGTTACTACTGTTA AGATGTATTCCACAAGAACAAAGTATGGTGAATGTCTAAACTCTCAGAATGTATGTATTGTTGGACTTCCATTGT TCGGGCTCTCCTTCATCGATACTCCTTTAGATATTGGGTTTCCATCTCTCAGACGGAGCTGTATACACCTATTTG AAGGGCAATGAGTATGAAGATATTGCTGTCGCCTGGGACTGGAACCTTATTCCGGGAATTACTACCGACTATGAA GCGACCAAACTTACTTGTTCCAGCGGCGTCACTGGGATTGAAGATTTCGTTGGTGGTGTGTCTAATGACGATACT GGTATCGCCGTCATGCGCTACACGAATCCCTTGACTGGCGACTTGAATTGGCAAAAAGCGTGGTTTTTCCTCGAG GGCGACGTCCAACACACCATGATTTCCAATATCACATCCACATCCGACAGCCCTGTCTTCTCCGTACTTGACCAA CGTCTCCATGATGACGCTATTTTCATGGATGACGGTGAACCGTTCAGAGCCAATGATGGACCTACTCCTTTGTCT TCAGCGACGCTTTGGCATGGCGGGGTAGGTTATGACCTGTCGGGCCTTGGAGATGATGACATCCTCCACGTTGAG GTTGGTCCAAAGTCAGGGAACTGGTCAGCGATCGGTACTTCAACTGAACCACCATCAACATTTGACCTCTTCGCT GCCTGGATTGAACACGGAACGCCCGCATCATCTATTTCCTATTCCACATTCCCCGGTACCAGTTTCACTGGTTTC ATGGGCAAGCAGGCCAAGCTTCGTTTGCAATCTGTTGTGAATGACGGGAGCGTGGGGGCCATATACGACGAGGAA CACCAAACAGTAATGGTTGTGTTTTGGGAAGAAGATGGTGGTAGTGTTACAATCAGACCCCCGAGATTGGCCCCG ATCACTATTAGCGCGGACGGCAACATAGCTCTGATTTATCGGTTTTCAGACGCTGCAGTTTATGTGTCAGATCCT TCTCAAACACTTACGGAAGTACAAGTCAATTTGGAATTGGGTACGGGCTGGAAGCCACCATTCTGGGGTTTCCAC AGGTCCAAAGACTTCAGTATATTCCTTCCAACGGGTGGCCTAGCAGGTAGTAGCGTGCGCCAGCCATTGAATTAG |