Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|006830
Gene name
Locationscaffold_1:1653763..1656913
Strand+
Gene length (bp)3150
Transcript length (bp)2589
Coding sequence length (bp)2589
Protein length (aa) 863

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02278 Lyase_8 Polysaccharide lyase family 8, super-sandwich domain 8.0E-70 486 734
PF08124 Lyase_8_N Polysaccharide lyase family 8, N terminal alpha-helical domain 3.6E-15 248 404
PF02884 Lyase_8_C Polysaccharide lyase family 8, C-terminal beta-sandwich domain 4.9E-13 751 821

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q59288|CSLA_PEDHD Chondroitinase-AC OS=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) GN=cslA PE=1 SV=1 128 858 3.0E-40
sp|Q9AQS0|XANLY_BACGL Xanthan lyase OS=Bacillus sp. (strain GL1) GN=xly PE=1 SV=1 185 774 6.0E-11

GO

GO Term Description Terminal node
GO:0005576 extracellular region Yes
GO:0016829 lyase activity Yes
GO:0005575 cellular_component No
GO:0003674 molecular_function No
GO:0003824 catalytic activity No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 31 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|006830
MKPLFNLPRTLFFHVSLFLSLLACPDLVSSASTSTSSTSLSSTHGIVVPSGSSSSRVLSSLTTSHVQSASSSLST
RISQTSATAPNSSKMTTIATSTFVNPSLNSSATATSTATVTTPSDPAILEEIEMLRTQVIDIIIGPLGQASAIPA
WLTSLGPDGKWPDSEVDYTTGCPARRANWPAQTHWQRILVMAAAWHGGLQGGENFVGDENLRKKTLLAIDYWFGR
DLTNLECMINGGTPSCPCDNPDNTLWNTNWFSNVILIPNLVGSSCILLNETLTAAQLDHCTKITNRSYDLFLRPF
NEVNFLTGANVLDVAKIGIDGALLNPNITQITDAYRRIHEEVVIQPAIKADGIRPDGSFGQHGGVLYNGNYGKDF
TNDIVAFEIEAAETRFAANSESRSALALLFEGDHWMIFRNTVTGVLHWDFSALGRFISFPVIDTQATGSIKLNLT
QIDVLGRLWDQPALVQFAESLSEHDMNANAGRLIGNRMFYNNDYMVHRGPNYVTTVKMYSTRTKYGECLNSQNIL
GFHLSDGAVYTYLKGNEYEDIAVAWDWNLIPGITTDYEATKLTCSSGVTGIEDFVGGVSNDDTGIAVMRYTNPLT
GDLNWQKAWFFLEGDVQHTMISNITSTSDSPVFSVLDQRLHDDAIFMDDGEPFRANDGPTPLSSATLWHGGVGYD
LSGLGDDDILHVEVGPKSGNWSAIGTSTEPPSTFDLFAAWIEHGTPASSISYSTFPGTSFTGFMGKQAKLRLQSV
VNDGSVGAIYDEEHQTVMVVFWEEDGGSVTIRPPRLAPITISADGNIALIYRFSDAAVYVSDPSQTLTEVQVNLE
LGTGWKPPFWGFHRSKDFSIFLPTGGLAGSSVRQPLN*
Coding >AgabiH97|006830
ATGAAGCCTCTCTTCAATCTCCCTCGTACTCTCTTTTTCCACGTCTCTTTGTTCCTTTCCCTCTTGGCGTGCCCC
GATCTGGTTTCAAGCGCGTCCACCTCTACATCATCCACCTCTTTATCCTCAACTCATGGCATTGTTGTGCCATCC
GGTTCTTCATCATCTCGGGTGCTTTCCTCGCTGACCACCTCACATGTACAATCTGCATCGTCCTCTTTGAGCACT
CGTATATCGCAGACATCTGCTACCGCCCCCAATTCATCCAAGATGACGACTATAGCCACTTCAACCTTTGTCAAT
CCTTCTTTGAATTCATCTGCCACAGCAACATCCACTGCTACGGTGACTACGCCTTCCGATCCCGCTATACTGGAA
GAAATAGAAATGTTGCGAACCCAAGTAATCGACATTATCATTGGCCCACTTGGTCAAGCGAGTGCAATACCTGCT
TGGCTGACATCCCTGGGTCCTGATGGCAAATGGCCTGATAGTGAAGTTGACTATACAACTGGCTGCCCTGCCCGC
CGGGCCAACTGGCCAGCCCAGACACATTGGCAGCGTATTCTCGTGATGGCAGCTGCATGGCACGGCGGATTACAA
GGAGGGGAAAACTTCGTCGGAGATGAAAATCTCCGTAAGAAAACACTACTGGCTATAGACTATTGGTTCGGGCGT
GATCTCACCAATCTTGAATGCATGATCAACGGTGGTACTCCGTCTTGTCCATGTGATAATCCTGATAATACCCTG
TGGAACACCAACTGGTTTTCTAATGTTATACTGATTCCGAACCTCGTTGGGTCATCATGCATACTGTTGAACGAG
ACTTTGACCGCGGCACAGTTGGATCACTGTACAAAAATAACCAACCGCTCATATGATCTCTTCTTGCGCCCATTT
AATGAAGTCAACTTCCTGACAGGTGCAAATGTTTTGGATGTCGCCAAAATTGGAATTGATGGGGCTCTACTCAAC
CCCAATATCACACAAATAACCGATGCATATCGTCGCATACATGAAGAGGTTGTAATTCAACCAGCTATCAAAGCC
GATGGTATCAGACCTGATGGGTCTTTCGGTCAGCATGGTGGTGTTCTCTACAACGGTAACTACGGCAAGGACTTT
ACAAACGACATCGTGGCCTTTGAAATTGAGGCGGCCGAGACACGTTTTGCTGCAAATTCCGAGTCTCGATCCGCT
CTTGCTCTTCTCTTCGAAGGTGACCATTGGATGATCTTTCGCAACACCGTCACGGGGGTGCTACACTGGGATTTT
TCTGCTCTTGGGCGATTTATCAGCTTTCCTGTCATTGATACTCAGGCCACCGGAAGTATCAAACTAAATCTTACT
CAGATTGATGTCCTTGGACGGCTTTGGGATCAACCGGCTCTTGTCCAATTTGCCGAAAGTCTTTCTGAACACGAC
ATGAATGCCAATGCAGGTCGGCTCATCGGCAATCGTATGTTCTACAACAACGACTACATGGTTCACCGTGGCCCG
AACTACGTTACTACTGTTAAGATGTATTCCACAAGAACAAAGTATGGTGAATGTCTAAACTCTCAGAATATATTG
GGTTTCCATCTCTCAGACGGAGCTGTATACACCTATTTGAAGGGCAATGAGTATGAAGATATTGCTGTCGCCTGG
GACTGGAACCTTATTCCGGGAATTACTACCGACTATGAAGCGACCAAACTTACTTGTTCCAGCGGCGTCACTGGG
ATTGAAGATTTCGTTGGTGGTGTGTCTAATGACGATACTGGTATCGCCGTCATGCGCTACACGAATCCCTTGACT
GGCGACTTGAATTGGCAAAAAGCGTGGTTTTTCCTCGAGGGCGACGTCCAACACACCATGATTTCCAATATCACA
TCCACATCCGACAGCCCTGTCTTCTCCGTACTTGACCAACGTCTCCATGATGACGCTATTTTCATGGATGACGGT
GAACCGTTCAGAGCCAATGATGGACCTACTCCTTTGTCTTCAGCGACGCTTTGGCATGGCGGGGTAGGTTATGAC
CTGTCGGGCCTTGGAGATGATGACATCCTCCACGTTGAGGTTGGTCCAAAGTCAGGGAACTGGTCAGCGATCGGT
ACTTCAACTGAACCACCATCAACATTTGACCTCTTCGCTGCCTGGATTGAACACGGAACGCCCGCATCATCTATT
TCCTATTCCACATTCCCCGGTACCAGTTTCACTGGTTTCATGGGCAAGCAGGCCAAGCTTCGTTTGCAATCTGTT
GTGAATGACGGGAGCGTGGGGGCCATATACGACGAGGAACACCAAACAGTAATGGTTGTGTTTTGGGAAGAAGAT
GGTGGTAGTGTTACAATCAGACCCCCGAGATTGGCCCCGATCACTATTAGCGCGGACGGCAACATAGCTCTGATT
TATCGGTTTTCAGACGCTGCAGTTTATGTGTCAGATCCTTCTCAAACACTTACGGAAGTACAAGTCAATTTGGAA
TTGGGTACGGGCTGGAAGCCACCATTCTGGGGTTTCCACAGGTCCAAAGACTTCAGTATATTCCTTCCAACGGGT
GGCCTAGCAGGTAGTAGCGTGCGCCAGCCATTGAATTAG
Transcript >AgabiH97|006830
ATGAAGCCTCTCTTCAATCTCCCTCGTACTCTCTTTTTCCACGTCTCTTTGTTCCTTTCCCTCTTGGCGTGCCCC
GATCTGGTTTCAAGCGCGTCCACCTCTACATCATCCACCTCTTTATCCTCAACTCATGGCATTGTTGTGCCATCC
GGTTCTTCATCATCTCGGGTGCTTTCCTCGCTGACCACCTCACATGTACAATCTGCATCGTCCTCTTTGAGCACT
CGTATATCGCAGACATCTGCTACCGCCCCCAATTCATCCAAGATGACGACTATAGCCACTTCAACCTTTGTCAAT
CCTTCTTTGAATTCATCTGCCACAGCAACATCCACTGCTACGGTGACTACGCCTTCCGATCCCGCTATACTGGAA
GAAATAGAAATGTTGCGAACCCAAGTAATCGACATTATCATTGGCCCACTTGGTCAAGCGAGTGCAATACCTGCT
TGGCTGACATCCCTGGGTCCTGATGGCAAATGGCCTGATAGTGAAGTTGACTATACAACTGGCTGCCCTGCCCGC
CGGGCCAACTGGCCAGCCCAGACACATTGGCAGCGTATTCTCGTGATGGCAGCTGCATGGCACGGCGGATTACAA
GGAGGGGAAAACTTCGTCGGAGATGAAAATCTCCGTAAGAAAACACTACTGGCTATAGACTATTGGTTCGGGCGT
GATCTCACCAATCTTGAATGCATGATCAACGGTGGTACTCCGTCTTGTCCATGTGATAATCCTGATAATACCCTG
TGGAACACCAACTGGTTTTCTAATGTTATACTGATTCCGAACCTCGTTGGGTCATCATGCATACTGTTGAACGAG
ACTTTGACCGCGGCACAGTTGGATCACTGTACAAAAATAACCAACCGCTCATATGATCTCTTCTTGCGCCCATTT
AATGAAGTCAACTTCCTGACAGGTGCAAATGTTTTGGATGTCGCCAAAATTGGAATTGATGGGGCTCTACTCAAC
CCCAATATCACACAAATAACCGATGCATATCGTCGCATACATGAAGAGGTTGTAATTCAACCAGCTATCAAAGCC
GATGGTATCAGACCTGATGGGTCTTTCGGTCAGCATGGTGGTGTTCTCTACAACGGTAACTACGGCAAGGACTTT
ACAAACGACATCGTGGCCTTTGAAATTGAGGCGGCCGAGACACGTTTTGCTGCAAATTCCGAGTCTCGATCCGCT
CTTGCTCTTCTCTTCGAAGGTGACCATTGGATGATCTTTCGCAACACCGTCACGGGGGTGCTACACTGGGATTTT
TCTGCTCTTGGGCGATTTATCAGCTTTCCTGTCATTGATACTCAGGCCACCGGAAGTATCAAACTAAATCTTACT
CAGATTGATGTCCTTGGACGGCTTTGGGATCAACCGGCTCTTGTCCAATTTGCCGAAAGTCTTTCTGAACACGAC
ATGAATGCCAATGCAGGTCGGCTCATCGGCAATCGTATGTTCTACAACAACGACTACATGGTTCACCGTGGCCCG
AACTACGTTACTACTGTTAAGATGTATTCCACAAGAACAAAGTATGGTGAATGTCTAAACTCTCAGAATATATTG
GGTTTCCATCTCTCAGACGGAGCTGTATACACCTATTTGAAGGGCAATGAGTATGAAGATATTGCTGTCGCCTGG
GACTGGAACCTTATTCCGGGAATTACTACCGACTATGAAGCGACCAAACTTACTTGTTCCAGCGGCGTCACTGGG
ATTGAAGATTTCGTTGGTGGTGTGTCTAATGACGATACTGGTATCGCCGTCATGCGCTACACGAATCCCTTGACT
GGCGACTTGAATTGGCAAAAAGCGTGGTTTTTCCTCGAGGGCGACGTCCAACACACCATGATTTCCAATATCACA
TCCACATCCGACAGCCCTGTCTTCTCCGTACTTGACCAACGTCTCCATGATGACGCTATTTTCATGGATGACGGT
GAACCGTTCAGAGCCAATGATGGACCTACTCCTTTGTCTTCAGCGACGCTTTGGCATGGCGGGGTAGGTTATGAC
CTGTCGGGCCTTGGAGATGATGACATCCTCCACGTTGAGGTTGGTCCAAAGTCAGGGAACTGGTCAGCGATCGGT
ACTTCAACTGAACCACCATCAACATTTGACCTCTTCGCTGCCTGGATTGAACACGGAACGCCCGCATCATCTATT
TCCTATTCCACATTCCCCGGTACCAGTTTCACTGGTTTCATGGGCAAGCAGGCCAAGCTTCGTTTGCAATCTGTT
GTGAATGACGGGAGCGTGGGGGCCATATACGACGAGGAACACCAAACAGTAATGGTTGTGTTTTGGGAAGAAGAT
GGTGGTAGTGTTACAATCAGACCCCCGAGATTGGCCCCGATCACTATTAGCGCGGACGGCAACATAGCTCTGATT
TATCGGTTTTCAGACGCTGCAGTTTATGTGTCAGATCCTTCTCAAACACTTACGGAAGTACAAGTCAATTTGGAA
TTGGGTACGGGCTGGAAGCCACCATTCTGGGGTTTCCACAGGTCCAAAGACTTCAGTATATTCCTTCCAACGGGT
GGCCTAGCAGGTAGTAGCGTGCGCCAGCCATTGAATTAG
Gene >AgabiH97|006830
ATGAAGCCTCTCTTCAATCTCCCTCGTACTCTCTTTTTCCACGTCTCTTTGTTCCTTTCCCTCTTGGCGTGCCCC
GATCTGGTTTCAAGCGCGTCCACCTCTACATCATCCACCTCTTTATCCTCAACTCATGGCATTGTTGTGCCATCC
GGTTCTTCATCATCTCGGGTGCTTTCCTCGCTGACCACCTCACATGTACAATCTGCATCGTCCTCTTTGAGCACT
CGTATATCGCAGACATCTGCTACCGCCCCCAATTCATCCAAGATGACGACTATAGCCACTTCAACCTTTGTCAAT
CCTTCTTTGAATTCATCTGCCACAGCAACATCCACTGCTACGGTGACTACGCCTTCCGATCCCGCTATACTGGAA
GAAATAGAAATGTTGCGAACCCAAGTAATCGACATTATCATTGGCCCACTTGGTCAAGCGAGTGCAATACCTGCT
TGGTTTGTGTTGAACATTCTAACCAGGTCTCGAACAGCAATAGCTAATCCACGCTAGGCTGACATCCCTGGGTCC
TGATGGCAAATGGCCTGATAGTGAAGTTGACTATACAACTGGCTGCCCTGCCCGCCGGGCCAACTGGCCAGCCCA
GACACATTGGCAGCGTATTCGTGAGTTCTTGCTTGGGGCGATCGTGGAAAAGCCTTCTCATGAATTTTAGTCGTG
ATGGCAGCTGCATGGCACGGCGGATTACAAGGAGGGGAAAACTTCGTCGGAGATGAAAATCTCCGTAAGAAAACA
CTACTGGCTATAGACTATTGGTTCGGGCGTGATCTCACCAATCTTGAATGCATGATCAACGGTGGTACTCCGTCT
TGTCCATGTGATAATCCTGATAATACCCTGTGGTATGAAGATGCTGCATTGAAATAAGGGCCACTACTGAAATAT
TTTTTCAAGGAACACCAACTGGTTTTCTAATGTTCGTCGCTGTCTTCTGTTTAGCACCCATCACCAATTGATTGT
ACTAGGTTATACTGATTCCGAACCTCGTTGGGTCATCATGCATACTGTTGAACGAGACTTTGACCGCGGCACAGT
TGGATCACTGTACAAAAATAACCAACCGCTCATATGATCTCTTCTTGCGCCCATTTAATGAAGTCAACTTCCTGA
CAGGTGCAAATGTTTTGGATGTCGCCAAAATTGGAATTGATGGGGCTCTACTCAACCCCAATATCACACAAATAA
CCGATGCATATCGTCGCATACATGAAGAGGTTGTAATTCAACCAGCTATCAAAGCCGATGGTATCAGACCTGATG
GGTCTTTCGGTGCGATATCATCTGGATTCTGATTCCTTGTCTCATTTCTGTATTTCAGGTCAGCATGGTGGTGTT
CTCTACAACGGTAACTACGGTAAGTGGGGTTGATTGAGTTCATAATATGTTTCGTGTGCTCAGGTTTTTTGCAGG
CAAGGACTTGTGAGTGGAGAATTGAAATTGAGGAACTCTCATATTGATTCTTCGAAGTACAAACGACATCGTGGC
CTTTGAAATTGAGGCGGCCGAGACACGTTTTGCTGCAAATTCCGAGTCTCGATCCGCTCTTGCTCTTCTCTTCGA
AGGTGACCATTGGATGATCTTTCGCAACACCGTCACGGGGGTGCTACACTGGGATTTTGTGAGTACCTCACTAAT
CTCATTTGACTCTTACTCAGTCAGGTCTAGTCTGCTCTTGGGCGATTTATCAGCTTTCCTGTCATTGATACTCAG
TACGTTCTACTCTACTTTTTCCTATCAGATAAATGTAAAACCATCTCTTTAGGGCCACCGGAAGTATCAAACTAA
ATCTTACTCAGATTGATGTCCTTGGACGGCTTTGGGATCAACCGGCTCTTGTCCAATTTGCCGAAAGTCTTTCTG
AACACGACATGAATGCCAATGCAGGTCGGCTCATCGGCAATCGTATGTTCTACAACAACGACTACATGGTTAGCT
TCCTCGCCTCCAAGCCTAGATTCTGATTTATAGTTCGTCAGGTTCACCGTGGCCCGAACTACGTTACTACTGTTA
AGATGTATTCCACAAGAACAAAGTATGGTGAATGTCTAAACTCTCAGAATGTATGTATTGTTGGACTTCCATTGT
TCGGGCTCTCCTTCATCGATACTCCTTTAGATATTGGGTTTCCATCTCTCAGACGGAGCTGTATACACCTATTTG
AAGGGCAATGAGTATGAAGATATTGCTGTCGCCTGGGACTGGAACCTTATTCCGGGAATTACTACCGACTATGAA
GCGACCAAACTTACTTGTTCCAGCGGCGTCACTGGGATTGAAGATTTCGTTGGTGGTGTGTCTAATGACGATACT
GGTATCGCCGTCATGCGCTACACGAATCCCTTGACTGGCGACTTGAATTGGCAAAAAGCGTGGTTTTTCCTCGAG
GGCGACGTCCAACACACCATGATTTCCAATATCACATCCACATCCGACAGCCCTGTCTTCTCCGTACTTGACCAA
CGTCTCCATGATGACGCTATTTTCATGGATGACGGTGAACCGTTCAGAGCCAATGATGGACCTACTCCTTTGTCT
TCAGCGACGCTTTGGCATGGCGGGGTAGGTTATGACCTGTCGGGCCTTGGAGATGATGACATCCTCCACGTTGAG
GTTGGTCCAAAGTCAGGGAACTGGTCAGCGATCGGTACTTCAACTGAACCACCATCAACATTTGACCTCTTCGCT
GCCTGGATTGAACACGGAACGCCCGCATCATCTATTTCCTATTCCACATTCCCCGGTACCAGTTTCACTGGTTTC
ATGGGCAAGCAGGCCAAGCTTCGTTTGCAATCTGTTGTGAATGACGGGAGCGTGGGGGCCATATACGACGAGGAA
CACCAAACAGTAATGGTTGTGTTTTGGGAAGAAGATGGTGGTAGTGTTACAATCAGACCCCCGAGATTGGCCCCG
ATCACTATTAGCGCGGACGGCAACATAGCTCTGATTTATCGGTTTTCAGACGCTGCAGTTTATGTGTCAGATCCT
TCTCAAACACTTACGGAAGTACAAGTCAATTTGGAATTGGGTACGGGCTGGAAGCCACCATTCTGGGGTTTCCAC
AGGTCCAAAGACTTCAGTATATTCCTTCCAACGGGTGGCCTAGCAGGTAGTAGCGTGCGCCAGCCATTGAATTAG

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