© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|006800 |
| Gene name | |
| Location | scaffold_1:1647752..1649256 |
| Strand | - |
| Gene length (bp) | 1504 |
| Transcript length (bp) | 936 |
| Coding sequence length (bp) | 936 |
| Protein length (aa) | 312 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02182 | SAD_SRA | SAD/SRA domain | 3.0E-50 | 129 | 288 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9FKA7|ORTH1_ARATH | E3 ubiquitin-protein ligase ORTHRUS 1 OS=Arabidopsis thaliana GN=ORTH1 PE=1 SV=1 | 129 | 289 | 2.0E-34 |
| sp|Q680I0|ORTH5_ARATH | E3 ubiquitin-protein ligase ORTHRUS 5 OS=Arabidopsis thaliana GN=ORTH5 PE=2 SV=1 | 134 | 289 | 3.0E-34 |
| sp|Q9C8E1|ORTH4_ARATH | Putative E3 ubiquitin-protein ligase ORTHRUS 4 OS=Arabidopsis thaliana GN=ORTH4 PE=3 SV=1 | 134 | 289 | 3.0E-34 |
| sp|Q96T88|UHRF1_HUMAN | E3 ubiquitin-protein ligase UHRF1 OS=Homo sapiens GN=UHRF1 PE=1 SV=1 | 129 | 289 | 4.0E-34 |
| sp|Q7TPK1|UHRF1_RAT | E3 ubiquitin-protein ligase UHRF1 OS=Rattus norvegicus GN=Uhrf1 PE=1 SV=2 | 115 | 295 | 7.0E-33 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9FKA7|ORTH1_ARATH | E3 ubiquitin-protein ligase ORTHRUS 1 OS=Arabidopsis thaliana GN=ORTH1 PE=1 SV=1 | 129 | 289 | 2.0E-34 |
| sp|Q680I0|ORTH5_ARATH | E3 ubiquitin-protein ligase ORTHRUS 5 OS=Arabidopsis thaliana GN=ORTH5 PE=2 SV=1 | 134 | 289 | 3.0E-34 |
| sp|Q9C8E1|ORTH4_ARATH | Putative E3 ubiquitin-protein ligase ORTHRUS 4 OS=Arabidopsis thaliana GN=ORTH4 PE=3 SV=1 | 134 | 289 | 3.0E-34 |
| sp|Q96T88|UHRF1_HUMAN | E3 ubiquitin-protein ligase UHRF1 OS=Homo sapiens GN=UHRF1 PE=1 SV=1 | 129 | 289 | 4.0E-34 |
| sp|Q7TPK1|UHRF1_RAT | E3 ubiquitin-protein ligase UHRF1 OS=Rattus norvegicus GN=Uhrf1 PE=1 SV=2 | 115 | 295 | 7.0E-33 |
| sp|Q8VDF2|UHRF1_MOUSE | E3 ubiquitin-protein ligase UHRF1 OS=Mus musculus GN=Uhrf1 PE=1 SV=2 | 115 | 295 | 8.0E-33 |
| sp|Q8VYZ0|ORTH2_ARATH | E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana GN=ORTH2 PE=1 SV=1 | 126 | 289 | 2.0E-32 |
| sp|A7E320|UHRF1_BOVIN | E3 ubiquitin-protein ligase UHRF1 OS=Bos taurus GN=UHRF1 PE=2 SV=1 | 129 | 284 | 5.0E-32 |
| sp|B6CHA3|UHRF1_XENLA | E3 ubiquitin-protein ligase UHRF1 OS=Xenopus laevis GN=uhrf1 PE=2 SV=1 | 129 | 292 | 7.0E-32 |
| sp|F6UA42|UHRF1_XENTR | E3 ubiquitin-protein ligase UHRF1 OS=Xenopus tropicalis GN=uhrf1 PE=3 SV=2 | 129 | 292 | 1.0E-31 |
| sp|E7EZF3|UHRF1_DANRE | E3 ubiquitin-protein ligase UHRF1 OS=Danio rerio GN=uhrf1 PE=1 SV=1 | 129 | 284 | 3.0E-31 |
| sp|Q7TMI3|UHRF2_MOUSE | E3 ubiquitin-protein ligase UHRF2 OS=Mus musculus GN=Uhrf2 PE=1 SV=1 | 129 | 292 | 4.0E-30 |
| sp|Q96PU4|UHRF2_HUMAN | E3 ubiquitin-protein ligase UHRF2 OS=Homo sapiens GN=UHRF2 PE=1 SV=1 | 129 | 292 | 1.0E-29 |
| sp|Q681I0|ORTHL_ARATH | E3 ubiquitin-protein ligase ORTHRUS-LIKE 1 OS=Arabidopsis thaliana GN=ORTHL PE=2 SV=1 | 108 | 289 | 2.0E-26 |
| sp|Q9FVS2|ORTH3_ARATH | E3 ubiquitin-protein ligase ORTHRUS 3 OS=Arabidopsis thaliana GN=ORTH3 PE=3 SV=2 | 134 | 289 | 7.0E-25 |
| sp|Q8GZB6|SUVH4_ARATH | Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 OS=Arabidopsis thaliana GN=SUVH4 PE=1 SV=2 | 127 | 291 | 2.0E-19 |
| sp|O82175|SUVH5_ARATH | Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 OS=Arabidopsis thaliana GN=SUVH5 PE=1 SV=1 | 127 | 295 | 1.0E-17 |
| sp|Q8VZ17|SUVH6_ARATH | Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 OS=Arabidopsis thaliana GN=SUVH6 PE=2 SV=2 | 128 | 291 | 1.0E-16 |
| sp|Q5QD03|SUVH3_CHLRE | Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 OS=Chlamydomonas reinhardtii GN=SUVH3 PE=2 SV=1 | 129 | 297 | 2.0E-14 |
| sp|Q9FF80|SUVH1_ARATH | Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Arabidopsis thaliana GN=SUVH1 PE=2 SV=1 | 115 | 290 | 2.0E-12 |
| sp|Q9T0G7|SUVH9_ARATH | Histone-lysine N-methyltransferase family member SUVH9 OS=Arabidopsis thaliana GN=SUVH9 PE=1 SV=1 | 109 | 288 | 6.0E-10 |
| sp|Q9C5P4|SUVH3_ARATH | Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 OS=Arabidopsis thaliana GN=SUVH3 PE=2 SV=2 | 119 | 290 | 5.0E-09 |
| sp|Q93YF5|SUVH1_TOBAC | Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Nicotiana tabacum GN=SUVH1 PE=1 SV=1 | 115 | 289 | 2.0E-08 |
| sp|Q9FHI0|YDG1_ARATH | YDG domain-containing protein At5g47150 OS=Arabidopsis thaliana GN=At5g47150 PE=2 SV=1 | 120 | 291 | 4.0E-08 |
| sp|O22781|SUVH2_ARATH | Histone-lysine N-methyltransferase family member SUVH2 OS=Arabidopsis thaliana GN=SUVH2 PE=1 SV=1 | 124 | 291 | 5.0E-08 |
| sp|Q9C5P1|SUVH7_ARATH | Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH7 OS=Arabidopsis thaliana GN=SUVH7 PE=2 SV=1 | 104 | 290 | 2.0E-07 |
| sp|Q9LVU3|YDG2_ARATH | YDG domain-containing protein At5g47160 OS=Arabidopsis thaliana GN=At5g47160 PE=2 SV=1 | 117 | 284 | 5.0E-06 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | Nuclear localization signal | 0.2079 | 0.9491 | 0.0206 | 0.0112 | 0.0731 | 0.0411 | 0.0239 | 0.0158 | 0.0195 | 0.007 |
| Orthofinder run ID | 1 |
| Orthogroup | 524 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|006800 MVSPYERQKELQIAKNKELLKSLGLEKPLFEPKEKPRKKATPQKRKRTDEDTENIEPSARKLQRAEDSSESGTLS TGLRRSSRNAGKAVDYSGERTLSLPQSVIRNKTSGNDGPMGREDGKRVHNPKTYGHIPGIAVGTWWLSRQDCSQD AVHAPWVGGISGGRQGAYSVALSGGYDDDVDLGYGFTYTGSGGRDLHGTKDKPKNLRTAPQSSDQSFEHSFNQML KVSSETRNPVRVVRGFKLQSKYAPSEGYRYDGLYVVEKAFMEKGNNAKGYLVCRYVFKRLPDQPPLPVREDYEDL DSVEESSAEED* |
| Coding | >AgabiH97|006800 ATGGTGTCCCCCTATGAAAGGCAGAAGGAACTACAAATAGCCAAGAATAAAGAGCTATTGAAAAGTCTCGGTCTC GAAAAACCTTTATTTGAACCGAAAGAAAAACCCAGGAAAAAAGCTACACCACAAAAGCGCAAGAGAACCGACGAA GACACGGAAAACATAGAACCCTCAGCACGGAAACTCCAACGCGCTGAAGATTCCAGTGAGAGTGGAACCTTGTCC ACAGGTCTTCGTCGCAGTTCTCGCAACGCTGGAAAAGCGGTCGATTACTCTGGCGAAAGAACGTTGAGTTTACCT CAATCTGTCATACGCAACAAAACTTCGGGCAATGATGGGCCTATGGGACGCGAAGATGGAAAGCGCGTACATAAC CCCAAAACATACGGCCACATCCCCGGTATTGCTGTTGGAACATGGTGGCTTTCAAGACAGGATTGTAGCCAGGAT GCAGTTCATGCGCCGTGGGTAGGTGGTATATCAGGGGGTCGTCAGGGAGCGTACAGTGTCGCCCTCAGCGGAGGT TACGATGATGACGTCGACCTTGGATATGGATTCACGTACACTGGTTCTGGTGGTCGTGATCTCCATGGGACAAAG GACAAACCTAAAAATCTTCGTACAGCTCCACAAAGCTCTGACCAAAGTTTTGAGCACTCGTTCAACCAGATGCTG AAGGTTTCGTCCGAAACCAGAAACCCAGTTCGCGTTGTGCGTGGTTTCAAGCTTCAATCTAAATATGCTCCAAGT GAAGGATACCGCTACGATGGATTATATGTAGTGGAAAAGGCCTTCATGGAGAAAGGAAACAATGCGAAAGGATAT CTTGTTTGCAGATACGTATTTAAGCGTTTACCGGATCAACCCCCTTTGCCAGTTAGAGAGGATTACGAAGACTTG GATTCAGTAGAGGAATCATCGGCGGAAGAAGATTAG |
| Transcript | >AgabiH97|006800 ATGGTGTCCCCCTATGAAAGGCAGAAGGAACTACAAATAGCCAAGAATAAAGAGCTATTGAAAAGTCTCGGTCTC GAAAAACCTTTATTTGAACCGAAAGAAAAACCCAGGAAAAAAGCTACACCACAAAAGCGCAAGAGAACCGACGAA GACACGGAAAACATAGAACCCTCAGCACGGAAACTCCAACGCGCTGAAGATTCCAGTGAGAGTGGAACCTTGTCC ACAGGTCTTCGTCGCAGTTCTCGCAACGCTGGAAAAGCGGTCGATTACTCTGGCGAAAGAACGTTGAGTTTACCT CAATCTGTCATACGCAACAAAACTTCGGGCAATGATGGGCCTATGGGACGCGAAGATGGAAAGCGCGTACATAAC CCCAAAACATACGGCCACATCCCCGGTATTGCTGTTGGAACATGGTGGCTTTCAAGACAGGATTGTAGCCAGGAT GCAGTTCATGCGCCGTGGGTAGGTGGTATATCAGGGGGTCGTCAGGGAGCGTACAGTGTCGCCCTCAGCGGAGGT TACGATGATGACGTCGACCTTGGATATGGATTCACGTACACTGGTTCTGGTGGTCGTGATCTCCATGGGACAAAG GACAAACCTAAAAATCTTCGTACAGCTCCACAAAGCTCTGACCAAAGTTTTGAGCACTCGTTCAACCAGATGCTG AAGGTTTCGTCCGAAACCAGAAACCCAGTTCGCGTTGTGCGTGGTTTCAAGCTTCAATCTAAATATGCTCCAAGT GAAGGATACCGCTACGATGGATTATATGTAGTGGAAAAGGCCTTCATGGAGAAAGGAAACAATGCGAAAGGATAT CTTGTTTGCAGATACGTATTTAAGCGTTTACCGGATCAACCCCCTTTGCCAGTTAGAGAGGATTACGAAGACTTG GATTCAGTAGAGGAATCATCGGCGGAAGAAGATTAG |
| Gene | >AgabiH97|006800 ATGGTGTCCCCCTATGAAAGGCAGAAGGAACTACAAATAGCCAAGGCTTGTATTTGATTATGCCCTGAAACTTAT AATCCTGACAAGGGCCTCAGAATAAAGAGCTATTGAAAAGTCTCGGTCTCGAAAAACCTTTATTTGAACCGAAAG AAAAACCCAGGAAAAAAGCTACACCACAAAAGCGCAAGAGAACCGACGAAGACACGGAAAACATAGAACCCTCAG CACGGAAACTCCAACGCGCTGAAGATTCCAGTGAGAGTGGAACCTTGTCCACAGGTCTTCGTCGCAGTTCTCGCA ACGCTGGAAAAGCGGTCGATTACTCTGGCGAAAGAACGTTGAGTTTACCTCAATCTGTCATACGCAACAAAACTT CGGGCAATGATGGGCCTATGGGACGCGAAGATGGAAAGCGCGTACATAACCCGTGAGTTGGTCGATTGCACCTCC CCGGGTTGAATTCCTAATTTCACCAAACTAGCAAAACATACGGCCACATCCCCGGTATTGCTGTTGGAACATGGT GGCTTTCAAGACAGGATTGTAGCCAGGATGCAGTTCATGCGTAAGTTATTTTATTAGACTTTAACCCATTATTCA GCGTTGTTTTTTCGATAGGCCGTGGGTAGGTGGTATATCAGGGGGTCGTCAGGGAGCGTACAGTGTCGCCCTCAG CGGAGGTTACGATGATGACGTCGACCTTGGATATGGATTGTAAGTTTTTTTTTTCTATGGCACTGATGTATGCTA AGTCTCGCTCTATAGCACGTACACTGGTTCTGGTAGGAAGAGCTATGTTGTTTTATGTCCATATTTGACGTGTTT CAGGTGGTCGTGATCTCCATGGGACAAAGGACAAACCTAAAAATGTGAGAATACCTATGCCCCCTTGTTAAGCAT ACTGATTCAAACACTTCGTTAAGCTTCGTACAGCTCCACAAAGCTCTGACCAAAGTTTTGAGCACTCGGTATGCA ACAATGTACTTTAGTGTATTTCTGCTGCTAACAAGTCATTGATCACTAGTTCAACCAGATGCTGAAGGTGATATA TCCTCGAATGAATGACCAGATACACTGGATGCTAAACTACTTTTAAAGGTTTCGTCCGAAACCAGAAACCCAGTT CGCGTTGTGCGTGGTTTCAAGCTTCAATCTAAATATGCTCCAAGTGAAGGGTTAGTCGAACATCTTGTCTCCCGA CCTGCAAACTGATCCCAATCCACTTAGATACCGCTACGATGGATTATATGTAGTGGAAAAGGTGGGCGACTCATT TTCTTATGACACGTCTTCTGAGAGACTTTAGGCCTTCATGGAGAAAGGAAACAATGCGAAAGGATATCTTGTTTG CAGATACGTATTTAAGGTTTGTCTCGAAGTGCGTGCGGAAATTGCGTATCTGAGAACCATATTCCAGCGTTTACC GGATCAACCCCCTTTGCCAGTTAGAGAGGATTACGAAGACTTGGATTCAGTAGAGGAATCATCGGCGGAAGAAGA TTAG |