© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|006040 |
| Gene name | |
| Location | scaffold_1:1476683..1478162 |
| Strand | - |
| Gene length (bp) | 1479 |
| Transcript length (bp) | 1056 |
| Coding sequence length (bp) | 1056 |
| Protein length (aa) | 352 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13230 | GATase_4 | Glutamine amidotransferases class-II | 1.1E-19 | 16 | 283 |
| PF13522 | GATase_6 | Glutamine amidotransferase domain | 5.4E-09 | 88 | 162 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53871|DUG3_YEAST | Probable glutamine amidotransferase DUG3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DUG3 PE=1 SV=1 | 1 | 324 | 2.0E-103 |
| sp|P54004|Y199_SYNY3 | Putative glutamine amidotransferase slr0199 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0199 PE=3 SV=1 | 1 | 283 | 1.0E-29 |
| sp|A0R5M9|EGTC_MYCS2 | Gamma-glutamyl-hercynylcysteine sulfoxide hydrolase OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=egtC PE=1 SV=1 | 1 | 125 | 9.0E-07 |
| sp|O69670|EGTC_MYCTU | Gamma-glutamyl-hercynylcysteine sulfoxide hydrolase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=egtC PE=1 SV=1 | 1 | 125 | 6.0E-06 |
| sp|P44098|Y1037_HAEIN | Putative glutamine amidotransferase HI_1037 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1037 PE=3 SV=1 | 87 | 214 | 7.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 96.83 | 56.83 | 136.84 |
| Initials | Initials knots | 73.52 | 43.76 | 103.27 |
| Pileal_Stipeal_center | Stage I stipe center | 117.83 | 70.59 | 165.07 |
| Pileal_Stipeal_shell | Stage I stipe shell | 106.62 | 64.11 | 149.12 |
| DIF_stipe_center | Stage II stipe center | 124.31 | 74.63 | 173.99 |
| DIF_stipe_shell | Stage II stipe shell | 130.88 | 78.56 | 183.21 |
| DIF_stipe_skin | Stage II stipe skin | 113.32 | 67.67 | 158.97 |
| DIF_cap_skin | Stage II cap skin | 127.20 | 76.35 | 178.06 |
| DIF_cap_tissue | Stage II cap tissue | 133.70 | 80.10 | 187.29 |
| DIF_gill_tissue | Stage II gill tissue | 117.76 | 70.73 | 164.79 |
| YFB_stipe_center | Young fruiting body stipe center | 121.78 | 73.16 | 170.41 |
| YFB_stipe_shell | Young fruiting body stipe shell | 140.19 | 83.90 | 196.47 |
| YFB_stipe_skin | Young fruiting body stipe skin | 123.94 | 73.53 | 174.35 |
| YFB_cap_skin | Young fruiting body cap skin | 137.88 | 82.18 | 193.58 |
| YFB_cap_tissue | Young fruiting body cap tissue | 157.72 | 94.07 | 221.38 |
| YFB_gill_tissue | Young fruiting body gill tissue | 126.15 | 75.70 | 176.60 |
| YFB_veil | Young fruiting body veil | 118.04 | 70.90 | 165.19 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.600779 | no |
| Casing | YFB_stipe_center | 0.520190 | no |
| Casing | YFB_stipe_shell | 0.215281 | no |
| Casing | YFB_stipe_skin | 0.483189 | no |
| Casing | YFB_cap_skin | 0.255586 | no |
| Casing | YFB_cap_tissue | 0.079655 | no |
| Casing | YFB_gill_tissue | 0.434560 | no |
| Casing | YFB_veil | 0.596348 | no |
| Casing | Initials | 0.413116 | no |
| Casing | Pileal_Stipeal_center | 0.601215 | no |
| Casing | Pileal_Stipeal_shell | 0.835071 | no |
| Casing | DIF_stipe_center | 0.462544 | no |
| Casing | DIF_stipe_shell | 0.343885 | no |
| Casing | DIF_stipe_skin | 0.701776 | no |
| Casing | DIF_cap_skin | 0.416514 | no |
| Casing | DIF_cap_tissue | 0.302114 | no |
| DIF_gill_tissue | YFB_stipe_center | 0.949040 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.650960 | no |
| DIF_gill_tissue | YFB_stipe_skin | 0.921393 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.697309 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.364601 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.888452 | no |
| DIF_gill_tissue | YFB_veil | 0.996051 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.730575 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.973224 | no |
| YFB_stipe_center | YFB_cap_skin | 0.773189 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.437230 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.946473 | no |
| YFB_stipe_center | YFB_veil | 0.953149 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.774836 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.976282 | no |
| YFB_stipe_shell | YFB_cap_tissue | 0.788488 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.813077 | no |
| YFB_stipe_shell | YFB_veil | 0.652111 | no |
| YFB_stipe_skin | YFB_cap_skin | 0.813374 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.489457 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.974372 | no |
| YFB_stipe_skin | YFB_veil | 0.925892 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.753789 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.848553 | no |
| YFB_cap_skin | YFB_veil | 0.697145 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.528641 | no |
| YFB_cap_tissue | YFB_veil | 0.366232 | no |
| YFB_gill_tissue | YFB_veil | 0.894431 | no |
| Initials | DIF_gill_tissue | 0.087080 | no |
| Initials | YFB_stipe_center | 0.059906 | no |
| Initials | YFB_stipe_shell | 0.007092 | yes |
| Initials | YFB_stipe_skin | 0.052346 | no |
| Initials | YFB_cap_skin | 0.010728 | yes |
| Initials | YFB_cap_tissue | 0.003765 | yes |
| Initials | YFB_gill_tissue | 0.035076 | yes |
| Initials | YFB_veil | 0.081756 | no |
| Initials | Pileal_Stipeal_center | 0.086070 | no |
| Initials | Pileal_Stipeal_shell | 0.208451 | no |
| Initials | DIF_stipe_center | 0.045911 | yes |
| Initials | DIF_stipe_shell | 0.027451 | yes |
| Initials | DIF_stipe_skin | 0.134284 | no |
| Initials | DIF_cap_skin | 0.033674 | yes |
| Initials | DIF_cap_tissue | 0.018624 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.998590 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.949476 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.650521 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.920926 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.694970 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.364167 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.888070 | no |
| Pileal_Stipeal_center | YFB_veil | 0.996811 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.822768 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.914189 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.812745 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.940086 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.872437 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.761189 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.826576 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.751088 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.391191 | no |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.713600 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.439887 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.173722 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.666974 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.824250 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.696716 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.566429 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.903770 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.644063 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.507422 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.916034 | no |
| DIF_stipe_center | YFB_stipe_center | 0.969833 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.777280 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.994620 | no |
| DIF_stipe_center | YFB_cap_skin | 0.819112 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.495031 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.978545 | no |
| DIF_stipe_center | YFB_veil | 0.921094 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.920680 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.841123 | no |
| DIF_stipe_center | DIF_cap_skin | 0.966897 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.880340 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.812501 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.881671 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.888396 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.915332 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.920651 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.621975 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.944762 | no |
| DIF_stipe_shell | YFB_veil | 0.820321 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.724689 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.957651 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.967505 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.942426 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.884457 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.553562 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.850238 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.604397 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.294143 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.811819 | no |
| DIF_stipe_skin | YFB_veil | 0.939623 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.792677 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.669632 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.874292 | no |
| DIF_cap_skin | YFB_stipe_center | 0.933113 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.832275 | no |
| DIF_cap_skin | YFB_stipe_skin | 0.962119 | no |
| DIF_cap_skin | YFB_cap_skin | 0.870089 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.549091 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.986776 | no |
| DIF_cap_skin | YFB_veil | 0.879907 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.922691 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.763592 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.838842 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.925381 | no |
| DIF_cap_tissue | YFB_stipe_skin | 0.875557 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.954775 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.675446 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.906765 | no |
| DIF_cap_tissue | YFB_veil | 0.771178 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|006040 MCRFVIYKGTSPVQLSHLLTRPCHSIINQAFDSRLRLDRRRPMNGDGFGVGWYDSVYDPELGGQPCIFTSVTPAW NNANLARLAVKIKSPLVFAHVRATTAGSLSLDNCHPFAYENLMFMHNGNIADFHLFKRRLQADLPDHLFSFVQGN TDSEWSFALFLSKVPDPNARSFSPEILRNAMLETITSLNQYAEDAGVTEPSLMNFCVTDGSSIVVSRYISSRKDE AASLWFSSGTEFNEYAEGGHYRMSKSDKRENIIMIASEPLTFERADWMEIKTNHLVVITPKMNLLQIPIEDKYFV SPSDPASLARDTDFAEEKGLLNPLTRQSKLAHDAAATAHESPFKRQVTAEH* |
| Coding | >AgabiH97|006040 ATGTGTCGATTCGTCATATATAAAGGAACTTCACCTGTACAACTCTCCCATCTTCTCACACGACCATGTCATTCT ATCATCAACCAAGCCTTTGATTCTCGACTTCGACTGGATAGACGGAGGCCAATGAATGGCGACGGATTTGGCGTT GGATGGTACGATTCGGTCTATGATCCAGAACTCGGAGGTCAACCTTGCATATTCACGTCTGTGACGCCTGCGTGG AACAATGCTAATCTAGCTCGACTAGCTGTCAAGATCAAGTCTCCCCTTGTATTTGCTCACGTTCGCGCCACCACT GCGGGATCGCTGTCCTTGGACAACTGCCACCCTTTCGCTTACGAAAACTTGATGTTTATGCACAACGGAAATATT GCAGATTTCCATCTTTTCAAACGGCGCCTCCAAGCCGACCTACCGGACCACTTATTCTCTTTCGTCCAAGGCAAT ACAGACTCCGAATGGTCGTTTGCACTTTTTCTATCCAAAGTACCTGACCCCAATGCACGGAGTTTCTCTCCAGAG ATCCTGCGCAACGCCATGCTGGAAACCATTACATCACTAAATCAGTATGCTGAAGATGCTGGAGTGACTGAACCA AGTTTGATGAATTTTTGTGTGACCGATGGGTCAAGCATCGTAGTATCGCGTTACATCTCCTCGAGAAAGGACGAG GCAGCATCCTTGTGGTTCTCTTCTGGAACAGAGTTCAACGAATACGCTGAGGGTGGCCATTACAGAATGTCAAAG TCGGACAAGCGGGAAAACATAATAATGATTGCAAGCGAACCCTTAACATTTGAGAGGGCGGACTGGATGGAGATC AAGACAAACCACTTGGTGGTAATTACACCCAAGATGAATCTATTACAGATTCCGATCGAAGACAAGTATTTTGTT TCCCCGTCAGACCCGGCTTCACTTGCTCGCGATACAGACTTTGCCGAGGAGAAGGGGTTGTTAAATCCATTGACT CGACAGAGCAAGCTGGCACACGACGCGGCCGCTACAGCGCATGAATCTCCATTCAAACGACAGGTCACTGCTGAG CATTGA |
| Transcript | >AgabiH97|006040 ATGTGTCGATTCGTCATATATAAAGGAACTTCACCTGTACAACTCTCCCATCTTCTCACACGACCATGTCATTCT ATCATCAACCAAGCCTTTGATTCTCGACTTCGACTGGATAGACGGAGGCCAATGAATGGCGACGGATTTGGCGTT GGATGGTACGATTCGGTCTATGATCCAGAACTCGGAGGTCAACCTTGCATATTCACGTCTGTGACGCCTGCGTGG AACAATGCTAATCTAGCTCGACTAGCTGTCAAGATCAAGTCTCCCCTTGTATTTGCTCACGTTCGCGCCACCACT GCGGGATCGCTGTCCTTGGACAACTGCCACCCTTTCGCTTACGAAAACTTGATGTTTATGCACAACGGAAATATT GCAGATTTCCATCTTTTCAAACGGCGCCTCCAAGCCGACCTACCGGACCACTTATTCTCTTTCGTCCAAGGCAAT ACAGACTCCGAATGGTCGTTTGCACTTTTTCTATCCAAAGTACCTGACCCCAATGCACGGAGTTTCTCTCCAGAG ATCCTGCGCAACGCCATGCTGGAAACCATTACATCACTAAATCAGTATGCTGAAGATGCTGGAGTGACTGAACCA AGTTTGATGAATTTTTGTGTGACCGATGGGTCAAGCATCGTAGTATCGCGTTACATCTCCTCGAGAAAGGACGAG GCAGCATCCTTGTGGTTCTCTTCTGGAACAGAGTTCAACGAATACGCTGAGGGTGGCCATTACAGAATGTCAAAG TCGGACAAGCGGGAAAACATAATAATGATTGCAAGCGAACCCTTAACATTTGAGAGGGCGGACTGGATGGAGATC AAGACAAACCACTTGGTGGTAATTACACCCAAGATGAATCTATTACAGATTCCGATCGAAGACAAGTATTTTGTT TCCCCGTCAGACCCGGCTTCACTTGCTCGCGATACAGACTTTGCCGAGGAGAAGGGGTTGTTAAATCCATTGACT CGACAGAGCAAGCTGGCACACGACGCGGCCGCTACAGCGCATGAATCTCCATTCAAACGACAGGTCACTGCTGAG CATTGA |
| Gene | >AgabiH97|006040 ATGTGTCGATTCGTCATATATAAAGGAACTTCACCTGTACAACTCTCCCATGTTTGTCCCTTAGAGTGTTCGTTG AGGTTAGCTGAAGTTGACAGTCGTTCTCTCCAGCTTCTCACACGACCATGTCATTCTATCATCAACCAAGCCTTT GATTCTCGACTTCGACTGGATAGACGGAGGCCAATGAATGGCGACGGATTTGGCGTTGGTTAGAGTTTGAAATTG AGGTCTGCCTTAGCCTGAATAACCTCAACAACAGGATGGTACGATTCGGTCTATGATCCAGAACTCGGAGGTCAA CCTTGCATATTCACGTCTGTGACGCCTGTGAGCTTCTTTAGACGTGGTTCATCGTCGGAAAACGTGCTCACAGAG TGACCAGGCGTGGAACAATGCTAATCTAGCTCGACTAGCTGTCAAGATCAAGTCTCCCCTTGTATTGTGCATACT CTCTCTTCTTGGGTCCTGCTTTAGTACCTTAATATCCGTACCAGTGCTCACGTTCGCGCCACCACTGCGGGATCG CTGTCCTTGGACAACTGCCACCCTTTCGCTTACGAAAACTTGATGGTACGAGTCTTTCTGCATCCATACCAGAAA AGGCGCTCATCAAAAATGGTAGTTTATGCACAACGGAAATATTGCAGATTTCCATCTTTTCAAACGGCGCCTCCA AGCCGACCTACCGGACCACTTATTCTCTTTCGTCCAAGGCAATACAGACTCCGAATGGTCGTTTGCACTTTTTCT ATCCAAAGTCTGTTGTGCAACTTGTCTCTTGTCCTTTGCTGTTACTTACACAGCATCAGGTACCTGACCCCAATG CACGGAGTTTCTCTCCAGAGATCCTGCGCAACGCCATGCTGGAAACCATTACATCACTAAATCAGTATGCTGAAG ATGCTGGAGTGACTGAACCAAGTTTGATGAATTTTTGTGTGACCGATGGGTCAAGCATCGTAGTATCGCGTTACA TCTCCTCGAGAAAGGACGAGGCAGCATCCTTGGTATCTATGATTTAATGTTATCCGCTCCATGCACTGATCATTT GTACTAGTGGTTCTCTTCTGGAACAGAGTTCAACGAATACGCTGAGGGTGGCCATTACAGAATGTCAAAGTCGGA CAAGCGGGAAAACATAATAATGATTGCAAGCGAACCCTTAACATTTGAGAGGGGTAAGCACTGGGTTTGAACGGG TTCAGCTTGGTTACTGACATAATCTGGCTAGCGGACTGGATGGAGATCAAGACAAACCACTTGGTGGTAATTACA CCCAAGATGAATCTATTACAGATTCCGATCGAAGACAAGTATTTTGTTTCCCCGTCAGACCCGGCTTCACTTGCT CGCGATACAGACTTTGCCGAGGAGAAGGGGTTGTTAAATCCATTGACTCGACAGAGCAAGCTGGCACACGACGCG GCCGCTACAGCGCATGAATCTCCATTCAAACGACAGGTCACTGCTGAGCATTGA |