Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|005750
Gene name
Locationscaffold_1:1417266..1417926
Strand-
Gene length (bp)660
Transcript length (bp)660
Coding sequence length (bp)660
Protein length (aa) 220

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00010 HLH Helix-loop-helix DNA-binding domain 8.6E-06 126 196

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0046983 protein dimerization activity Yes
GO:0003674 molecular_function No
GO:0005515 protein binding No
GO:0005488 binding No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal 0.501 0.9242 0.0315 0.0118 0.5082 0.0006 0.0722 0.0728 0.0435 0.0053

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Helix-loop-helix

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup5475
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|005750
Agaricus bisporus var bisporus H97 AgabiH97|005750 (this protein)
Rhodonia placenta FPRL280 RhoplFPRL280|35_39

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|005750
MASPPLSPHDFDFASFNPNLPTLFPNPPALPASAELFSSAETDHLLGFLDNFNDAAWGLTPDSQPYDVYDALAPY
SNPHLNTTPRPSTSAFGVPSESPPSISFSPSAGTKNANASRSKALLSTPQKRLNHIMSEQKRRNAIRDGYAQLIT
LLAPTGSTPALSMPTRGRPKGSGSRGKGQSKGKSGVLFRAVEYCRWLEEGRDALREEVLRVEAAAAGRH*
Coding >AgabiH97|005750
ATGGCGTCTCCTCCCCTCTCCCCCCACGACTTTGACTTTGCGTCCTTCAACCCCAATCTCCCCACTCTCTTCCCC
AACCCACCTGCCCTCCCCGCATCTGCCGAGCTCTTTTCCTCTGCAGAGACAGACCACCTCCTCGGCTTTCTCGAC
AACTTCAACGACGCTGCCTGGGGTCTCACCCCCGACTCACAGCCCTACGATGTCTACGATGCCCTCGCCCCCTAC
TCCAATCCTCACCTCAACACCACCCCAAGACCATCCACCTCTGCGTTTGGAGTGCCCTCTGAATCTCCCCCATCC
ATCTCCTTTTCTCCGTCCGCAGGCACAAAAAATGCCAATGCATCACGGTCCAAAGCCCTCCTTTCCACTCCACAA
AAGCGTCTCAACCATATCATGTCAGAGCAAAAGCGGCGCAATGCCATTCGCGATGGTTATGCCCAGCTGATCACA
CTCCTCGCCCCCACCGGATCTACTCCCGCTCTCTCTATGCCCACACGCGGCCGGCCAAAAGGCAGTGGCAGTCGA
GGCAAAGGCCAGAGCAAAGGCAAAAGTGGTGTCCTTTTCCGCGCTGTCGAGTATTGTCGTTGGCTTGAAGAGGGA
CGGGATGCTCTCAGAGAGGAAGTGTTACGCGTCGAAGCTGCTGCCGCTGGTAGGCATTAA
Transcript >AgabiH97|005750
ATGGCGTCTCCTCCCCTCTCCCCCCACGACTTTGACTTTGCGTCCTTCAACCCCAATCTCCCCACTCTCTTCCCC
AACCCACCTGCCCTCCCCGCATCTGCCGAGCTCTTTTCCTCTGCAGAGACAGACCACCTCCTCGGCTTTCTCGAC
AACTTCAACGACGCTGCCTGGGGTCTCACCCCCGACTCACAGCCCTACGATGTCTACGATGCCCTCGCCCCCTAC
TCCAATCCTCACCTCAACACCACCCCAAGACCATCCACCTCTGCGTTTGGAGTGCCCTCTGAATCTCCCCCATCC
ATCTCCTTTTCTCCGTCCGCAGGCACAAAAAATGCCAATGCATCACGGTCCAAAGCCCTCCTTTCCACTCCACAA
AAGCGTCTCAACCATATCATGTCAGAGCAAAAGCGGCGCAATGCCATTCGCGATGGTTATGCCCAGCTGATCACA
CTCCTCGCCCCCACCGGATCTACTCCCGCTCTCTCTATGCCCACACGCGGCCGGCCAAAAGGCAGTGGCAGTCGA
GGCAAAGGCCAGAGCAAAGGCAAAAGTGGTGTCCTTTTCCGCGCTGTCGAGTATTGTCGTTGGCTTGAAGAGGGA
CGGGATGCTCTCAGAGAGGAAGTGTTACGCGTCGAAGCTGCTGCCGCTGGTAGGCATTAA
Gene >AgabiH97|005750
ATGGCGTCTCCTCCCCTCTCCCCCCACGACTTTGACTTTGCGTCCTTCAACCCCAATCTCCCCACTCTCTTCCCC
AACCCACCTGCCCTCCCCGCATCTGCCGAGCTCTTTTCCTCTGCAGAGACAGACCACCTCCTCGGCTTTCTCGAC
AACTTCAACGACGCTGCCTGGGGTCTCACCCCCGACTCACAGCCCTACGATGTCTACGATGCCCTCGCCCCCTAC
TCCAATCCTCACCTCAACACCACCCCAAGACCATCCACCTCTGCGTTTGGAGTGCCCTCTGAATCTCCCCCATCC
ATCTCCTTTTCTCCGTCCGCAGGCACAAAAAATGCCAATGCATCACGGTCCAAAGCCCTCCTTTCCACTCCACAA
AAGCGTCTCAACCATATCATGTCAGAGCAAAAGCGGCGCAATGCCATTCGCGATGGTTATGCCCAGCTGATCACA
CTCCTCGCCCCCACCGGATCTACTCCCGCTCTCTCTATGCCCACACGCGGCCGGCCAAAAGGCAGTGGCAGTCGA
GGCAAAGGCCAGAGCAAAGGCAAAAGTGGTGTCCTTTTCCGCGCTGTCGAGTATTGTCGTTGGCTTGAAGAGGGA
CGGGATGCTCTCAGAGAGGAAGTGTTACGCGTCGAAGCTGCTGCCGCTGGTAGGCATTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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