© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|005670 |
| Gene name | |
| Location | scaffold_1:1397974..1399791 |
| Strand | + |
| Gene length (bp) | 1817 |
| Transcript length (bp) | 1167 |
| Coding sequence length (bp) | 1167 |
| Protein length (aa) | 389 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF16363 | GDP_Man_Dehyd | GDP-mannose 4,6 dehydratase | 1.8E-45 | 12 | 359 |
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 1.4E-41 | 10 | 278 |
| PF01073 | 3Beta_HSD | 3-beta hydroxysteroid dehydrogenase/isomerase family | 9.9E-11 | 11 | 184 |
| PF04321 | RmlD_sub_bind | RmlD substrate binding domain | 1.8E-10 | 9 | 188 |
| PF02719 | Polysacc_synt_2 | Polysaccharide biosynthesis protein | 1.8E-09 | 10 | 149 |
| PF08659 | KR | KR domain | 2.7E-07 | 10 | 154 |
| PF07993 | NAD_binding_4 | Male sterility protein | 1.3E-05 | 12 | 188 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q553X7|GALE_DICDI | UDP-glucose 4-epimerase OS=Dictyostelium discoideum GN=galE PE=1 SV=1 | 4 | 370 | 4.0E-111 |
| sp|Q9W0P5|GALE_DROME | UDP-glucose 4-epimerase OS=Drosophila melanogaster GN=Gale PE=1 SV=1 | 10 | 370 | 9.0E-104 |
| sp|Q9SN58|UGE5_ARATH | UDP-glucose 4-epimerase 5 OS=Arabidopsis thaliana GN=UGE5 PE=1 SV=3 | 8 | 379 | 4.0E-102 |
| sp|Q14376|GALE_HUMAN | UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE=1 SV=2 | 8 | 370 | 5.0E-102 |
| sp|P55180|GALE_BACSU | UDP-glucose 4-epimerase OS=Bacillus subtilis (strain 168) GN=galE PE=3 SV=1 | 10 | 375 | 5.0E-102 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q553X7|GALE_DICDI | UDP-glucose 4-epimerase OS=Dictyostelium discoideum GN=galE PE=1 SV=1 | 4 | 370 | 4.0E-111 |
| sp|Q9W0P5|GALE_DROME | UDP-glucose 4-epimerase OS=Drosophila melanogaster GN=Gale PE=1 SV=1 | 10 | 370 | 9.0E-104 |
| sp|Q9SN58|UGE5_ARATH | UDP-glucose 4-epimerase 5 OS=Arabidopsis thaliana GN=UGE5 PE=1 SV=3 | 8 | 379 | 4.0E-102 |
| sp|Q14376|GALE_HUMAN | UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE=1 SV=2 | 8 | 370 | 5.0E-102 |
| sp|P55180|GALE_BACSU | UDP-glucose 4-epimerase OS=Bacillus subtilis (strain 168) GN=galE PE=3 SV=1 | 10 | 375 | 5.0E-102 |
| sp|Q3T105|GALE_BOVIN | UDP-glucose 4-epimerase OS=Bos taurus GN=GALE PE=2 SV=2 | 8 | 370 | 2.0E-101 |
| sp|Q5R8D0|GALE_PONAB | UDP-glucose 4-epimerase OS=Pongo abelii GN=GALE PE=2 SV=1 | 8 | 370 | 9.0E-101 |
| sp|Q9T0A7|UGE2_ARATH | UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana GN=UGE2 PE=1 SV=1 | 8 | 368 | 2.0E-99 |
| sp|Q8R059|GALE_MOUSE | UDP-glucose 4-epimerase OS=Mus musculus GN=Gale PE=1 SV=1 | 7 | 370 | 2.0E-99 |
| sp|Q8LDN8|UGE3_ARATH | Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 3 OS=Arabidopsis thaliana GN=UGE3 PE=1 SV=1 | 8 | 370 | 2.0E-99 |
| sp|Q9HDU3|GAL10_SCHPO | Bifunctional protein gal10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gal10 PE=3 SV=1 | 10 | 372 | 6.0E-99 |
| sp|Q8LNZ3|UGE1_ORYSJ | UDP-glucose 4-epimerase 1 OS=Oryza sativa subsp. japonica GN=UGE-1 PE=2 SV=1 | 7 | 373 | 1.0E-98 |
| sp|Q42605|UGE1_ARATH | Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 OS=Arabidopsis thaliana GN=UGE1 PE=1 SV=2 | 8 | 373 | 2.0E-98 |
| sp|B0M3E8|UGE1_PEA | Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 OS=Pisum sativum GN=UGE1 PE=1 SV=2 | 8 | 370 | 3.0E-98 |
| sp|Q9C7W7|UGE4_ARATH | UDP-glucose 4-epimerase 4 OS=Arabidopsis thaliana GN=UGE4 PE=1 SV=1 | 9 | 374 | 3.0E-98 |
| sp|Q6ZDJ7|UGE2_ORYSJ | UDP-glucose 4-epimerase 2 OS=Oryza sativa subsp. japonica GN=UGE-2 PE=2 SV=1 | 7 | 380 | 3.0E-98 |
| sp|P04397|GAL10_YEAST | Bifunctional protein GAL10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAL10 PE=1 SV=2 | 1 | 370 | 6.0E-98 |
| sp|Q43070|GALE1_PEA | UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE PE=2 SV=1 | 8 | 370 | 2.0E-97 |
| sp|P35673|GALE_ERWAM | UDP-glucose 4-epimerase OS=Erwinia amylovora GN=galE PE=3 SV=1 | 9 | 370 | 5.0E-97 |
| sp|Q9Y7X5|UGE1_SCHPO | UDP-glucose 4-epimerase uge1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=uge1 PE=1 SV=1 | 10 | 374 | 2.0E-96 |
| sp|O65781|GALE2_CYATE | UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetragonoloba PE=2 SV=1 | 8 | 370 | 7.0E-96 |
| sp|P18645|GALE_RAT | UDP-glucose 4-epimerase OS=Rattus norvegicus GN=Gale PE=2 SV=1 | 8 | 370 | 1.0E-95 |
| sp|P40801|GAL10_PACTA | Bifunctional protein GAL10 OS=Pachysolen tannophilus GN=GAL10 PE=2 SV=1 | 10 | 372 | 3.0E-94 |
| sp|Q9F7D4|GALE_YERPE | UDP-glucose 4-epimerase OS=Yersinia pestis GN=galE PE=3 SV=1 | 10 | 370 | 3.0E-94 |
| sp|Q6K2E1|UGE4_ORYSJ | UDP-glucose 4-epimerase 4 OS=Oryza sativa subsp. japonica GN=UGE-4 PE=2 SV=1 | 6 | 378 | 4.0E-94 |
| sp|O65780|GALE1_CYATE | UDP-glucose 4-epimerase GEPI42 OS=Cyamopsis tetragonoloba PE=2 SV=1 | 8 | 370 | 4.0E-94 |
| sp|Q652A8|UGE3_ORYSJ | UDP-glucose 4-epimerase 3 OS=Oryza sativa subsp. japonica GN=UGE-3 PE=2 SV=1 | 9 | 370 | 8.0E-94 |
| sp|Q9CNY5|GALE_PASMU | UDP-glucose 4-epimerase OS=Pasteurella multocida (strain Pm70) GN=galE PE=3 SV=1 | 10 | 372 | 1.0E-90 |
| sp|P09609|GAL10_KLULA | Bifunctional protein GAL10 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=GAL10 PE=2 SV=2 | 8 | 370 | 1.0E-90 |
| sp|P24325|GALE_HAEIN | UDP-glucose 4-epimerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=galE PE=3 SV=2 | 10 | 372 | 1.0E-90 |
| sp|Q57301|GALE_YEREN | UDP-glucose 4-epimerase OS=Yersinia enterocolitica GN=galE PE=3 SV=1 | 9 | 370 | 2.0E-90 |
| sp|P56997|GALE_NEIMA | UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=galE PE=3 SV=1 | 7 | 370 | 1.0E-89 |
| sp|P56986|GALE_NEIMC | UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup C GN=galE PE=3 SV=1 | 7 | 370 | 5.0E-89 |
| sp|E8MF10|GALE_BIFL2 | UDP-glucose 4-epimerase OS=Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 / JCM 1217 / NCTC 11818 / E194b) GN=lnpD PE=1 SV=1 | 7 | 375 | 6.0E-88 |
| sp|Q56093|GALE_SALTI | UDP-glucose 4-epimerase OS=Salmonella typhi GN=galE PE=3 SV=2 | 10 | 370 | 6.0E-88 |
| sp|P09147|GALE_ECOLI | UDP-glucose 4-epimerase OS=Escherichia coli (strain K12) GN=galE PE=1 SV=1 | 10 | 370 | 7.0E-88 |
| sp|P22715|GALE_SALTY | UDP-glucose 4-epimerase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=galE PE=3 SV=2 | 10 | 370 | 9.0E-88 |
| sp|P56985|GALE_NEIMB | UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup B (strain MC58) GN=galE PE=3 SV=1 | 7 | 370 | 1.0E-87 |
| sp|Q59678|GALE_MANHA | UDP-glucose 4-epimerase OS=Mannheimia haemolytica GN=galE PE=3 SV=1 | 10 | 372 | 1.0E-85 |
| sp|Q05026|GALE_NEIGO | UDP-glucose 4-epimerase OS=Neisseria gonorrhoeae GN=galE PE=3 SV=1 | 10 | 368 | 4.0E-85 |
| sp|Q9KDV3|GALE_BACHD | UDP-glucose 4-epimerase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=galE PE=3 SV=1 | 10 | 378 | 3.0E-67 |
| sp|P96995|GALE_STRMU | UDP-glucose 4-epimerase OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=galE PE=3 SV=2 | 10 | 370 | 1.0E-62 |
| sp|P21977|GALE_STRTR | UDP-glucose 4-epimerase OS=Streptococcus thermophilus GN=galE PE=3 SV=1 | 10 | 370 | 3.0E-59 |
| sp|Q8H0B2|ARAE3_ORYSJ | Probable UDP-arabinose 4-epimerase 3 OS=Oryza sativa subsp. japonica GN=UEL-3 PE=2 SV=1 | 4 | 373 | 1.0E-58 |
| sp|O84903|GALE_LACCA | UDP-glucose 4-epimerase OS=Lactobacillus casei GN=galE PE=3 SV=1 | 10 | 370 | 2.0E-58 |
| sp|Q8H930|ARAE1_ORYSJ | Probable UDP-arabinose 4-epimerase 1 OS=Oryza sativa subsp. japonica GN=UEL-1 PE=2 SV=2 | 4 | 370 | 2.0E-58 |
| sp|Q45291|GALE_CORGL | UDP-glucose 4-epimerase OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=galE PE=3 SV=2 | 10 | 378 | 3.0E-57 |
| sp|Q7WTB1|GALE_LACHE | UDP-glucose 4-epimerase OS=Lactobacillus helveticus GN=galE PE=2 SV=1 | 10 | 370 | 1.0E-56 |
| sp|Q8H0B6|ARAE2_ORYSJ | Probable UDP-arabinose 4-epimerase 2 OS=Oryza sativa subsp. japonica GN=UEL-2 PE=2 SV=1 | 4 | 373 | 3.0E-55 |
| sp|Q9SA77|ARAE1_ARATH | UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1 | 4 | 364 | 6.0E-55 |
| sp|O64749|ARAE2_ARATH | Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsis thaliana GN=At2g34850 PE=2 SV=3 | 3 | 364 | 1.0E-53 |
| sp|Q9FI17|ARAE4_ARATH | Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsis thaliana GN=At5g44480 PE=3 SV=1 | 4 | 373 | 7.0E-53 |
| sp|P13226|GALE_STRLI | UDP-glucose 4-epimerase OS=Streptomyces lividans GN=galE PE=3 SV=2 | 11 | 370 | 2.0E-52 |
| sp|P33119|GALE_CORDI | UDP-glucose 4-epimerase OS=Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) GN=galE PE=3 SV=2 | 10 | 376 | 6.0E-52 |
| sp|Q59745|EXOB_RHILT | UDP-glucose 4-epimerase OS=Rhizobium leguminosarum bv. trifolii GN=exoB PE=3 SV=1 | 8 | 367 | 2.0E-51 |
| sp|Q9SUN3|ARAE3_ARATH | Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g20460 PE=2 SV=3 | 3 | 374 | 3.0E-51 |
| sp|P26503|EXOB_RHIME | UDP-glucose 4-epimerase OS=Rhizobium meliloti (strain 1021) GN=exoB PE=3 SV=1 | 8 | 371 | 8.0E-46 |
| sp|P75517|GALE_MYCPN | UDP-glucose 4-epimerase OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=galE PE=3 SV=1 | 10 | 359 | 1.0E-45 |
| sp|Q59083|EXOB_AZOBR | UDP-glucose 4-epimerase OS=Azospirillum brasilense GN=exoB PE=3 SV=1 | 10 | 364 | 2.0E-44 |
| sp|P47364|GALE_MYCGE | UDP-glucose 4-epimerase OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=galE PE=3 SV=1 | 10 | 363 | 7.0E-30 |
| sp|Q57664|GALE_METJA | Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0211 PE=3 SV=1 | 10 | 367 | 1.0E-23 |
| sp|P56600|GAL10_CANMA | Bifunctional protein GAL10 (Fragment) OS=Candida maltosa GN=GAL10 PE=3 SV=1 | 11 | 168 | 2.0E-23 |
| sp|O22141|GAE4_ARATH | UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1 | 10 | 363 | 9.0E-20 |
| sp|Q58455|Y1055_METJA | Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1055 PE=3 SV=1 | 8 | 367 | 1.0E-19 |
| sp|P45602|GALE_KLEPN | UDP-glucose 4-epimerase (Fragment) OS=Klebsiella pneumoniae GN=galE PE=3 SV=1 | 10 | 164 | 3.0E-19 |
| sp|Q9LPC1|GAE2_ARATH | UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1 | 9 | 363 | 7.0E-17 |
| sp|Q9LIS3|GAE6_ARATH | UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1 | 9 | 363 | 1.0E-16 |
| sp|O81312|GAE3_ARATH | UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1 | 9 | 363 | 5.0E-16 |
| sp|P39858|CAPI_STAAU | Protein CapI OS=Staphylococcus aureus GN=capI PE=3 SV=1 | 10 | 363 | 3.0E-15 |
| sp|O54067|LPSL_RHIME | UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti (strain 1021) GN=lspL PE=3 SV=2 | 11 | 374 | 2.0E-14 |
| sp|Q9M0B6|GAE1_ARATH | UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1 | 9 | 363 | 6.0E-14 |
| sp|Q7BJX9|GNE_PLESH | UDP-N-acetylglucosamine 4-epimerase OS=Plesiomonas shigelloides GN=wbgU PE=1 SV=1 | 8 | 280 | 7.0E-13 |
| sp|O34886|YTCB_BACSU | Uncharacterized UDP-glucose epimerase YtcB OS=Bacillus subtilis (strain 168) GN=ytcB PE=3 SV=1 | 10 | 354 | 1.0E-11 |
| sp|P9WN67|GALE_MYCTU | UDP-glucose 4-epimerase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=galE1 PE=1 SV=1 | 11 | 358 | 1.0E-11 |
| sp|P9WN66|GALE_MYCTO | UDP-glucose 4-epimerase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=galE1 PE=3 SV=1 | 11 | 358 | 1.0E-11 |
| sp|Q04973|VIPB_SALTI | Vi polysaccharide biosynthesis protein VipB/TviC OS=Salmonella typhi GN=vipB PE=3 SV=1 | 8 | 363 | 6.0E-11 |
| sp|Q6E7F2|FCF1_ECOLX | dTDP-4-dehydro-6-deoxyglucose reductase OS=Escherichia coli GN=fcf1 PE=1 SV=1 | 10 | 312 | 1.0E-10 |
| sp|P26391|RMLB_SALTY | dTDP-glucose 4,6-dehydratase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rfbB PE=1 SV=1 | 10 | 375 | 3.0E-10 |
| sp|Q47GJ3|HLDD_DECAR | ADP-L-glycero-D-manno-heptose-6-epimerase OS=Dechloromonas aromatica (strain RCB) GN=hldD PE=3 SV=1 | 10 | 310 | 3.0E-10 |
| sp|Q54WS6|TGDS_DICDI | dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium discoideum GN=tgds PE=3 SV=1 | 7 | 311 | 3.0E-10 |
| sp|Q04871|YCL2_ECO11 | Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia coli O111:H- PE=3 SV=1 | 11 | 363 | 1.0E-09 |
| sp|Q9K002|HLDD_NEIMB | ADP-L-glycero-D-manno-heptose-6-epimerase OS=Neisseria meningitidis serogroup B (strain MC58) GN=hldD PE=3 SV=1 | 10 | 314 | 9.0E-08 |
| sp|A9M3Q7|HLDD_NEIM0 | ADP-L-glycero-D-manno-heptose-6-epimerase OS=Neisseria meningitidis serogroup C (strain 053442) GN=hldD PE=3 SV=1 | 10 | 314 | 1.0E-07 |
| sp|Q9JQX8|HLDD_NEIMA | ADP-L-glycero-D-manno-heptose-6-epimerase OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=hldD PE=3 SV=1 | 10 | 310 | 1.0E-07 |
| sp|Q51061|HLDD_NEIGO | ADP-L-glycero-D-manno-heptose-6-epimerase OS=Neisseria gonorrhoeae GN=hldD PE=3 SV=1 | 10 | 310 | 1.0E-07 |
| sp|A1KT78|HLDD_NEIMF | ADP-L-glycero-D-manno-heptose-6-epimerase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / DSM 15464 / FAM18) GN=hldD PE=3 SV=1 | 10 | 314 | 2.0E-07 |
| sp|Q3SK74|HLDD_THIDA | ADP-L-glycero-D-manno-heptose-6-epimerase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=hldD PE=3 SV=1 | 11 | 290 | 2.0E-07 |
| sp|Q5F9J0|HLDD_NEIG1 | ADP-L-glycero-D-manno-heptose-6-epimerase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=hldD PE=3 SV=1 | 10 | 290 | 3.0E-07 |
| sp|Q46Y59|HLDD_CUPPJ | ADP-L-glycero-D-manno-heptose-6-epimerase OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=hldD PE=3 SV=1 | 10 | 274 | 6.0E-07 |
| sp|A0R5C5|GALE_MYCS2 | UDP-glucose 4-epimerase OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_6142 PE=1 SV=2 | 11 | 367 | 2.0E-06 |
| sp|Q1LQG2|HLDD_CUPMC | ADP-L-glycero-D-manno-heptose-6-epimerase OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) GN=hldD PE=3 SV=1 | 10 | 316 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Yes |
| GO:0003854 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity | Yes |
| GO:0006694 | steroid biosynthetic process | Yes |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0033764 | steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | No |
| GO:0009058 | biosynthetic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0016229 | steroid dehydrogenase activity | No |
| GO:0008202 | steroid metabolic process | No |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0006629 | lipid metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 33 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 289.47 | 163.20 | 415.75 |
| Initials | Initials knots | 213.74 | 124.78 | 302.69 |
| Pileal_Stipeal_center | Stage I stipe center | 109.76 | 65.96 | 153.56 |
| Pileal_Stipeal_shell | Stage I stipe shell | 68.73 | 41.04 | 96.43 |
| DIF_stipe_center | Stage II stipe center | 118.84 | 71.38 | 166.31 |
| DIF_stipe_shell | Stage II stipe shell | 128.11 | 76.75 | 179.47 |
| DIF_stipe_skin | Stage II stipe skin | 114.96 | 68.46 | 161.46 |
| DIF_cap_skin | Stage II cap skin | 69.96 | 41.67 | 98.24 |
| DIF_cap_tissue | Stage II cap tissue | 67.21 | 40.00 | 94.43 |
| DIF_gill_tissue | Stage II gill tissue | 73.68 | 44.13 | 103.22 |
| YFB_stipe_center | Young fruiting body stipe center | 172.96 | 101.47 | 244.46 |
| YFB_stipe_shell | Young fruiting body stipe shell | 199.20 | 117.20 | 281.20 |
| YFB_stipe_skin | Young fruiting body stipe skin | 133.37 | 79.77 | 186.98 |
| YFB_cap_skin | Young fruiting body cap skin | 81.79 | 49.15 | 114.43 |
| YFB_cap_tissue | Young fruiting body cap tissue | 71.99 | 43.11 | 100.88 |
| YFB_gill_tissue | Young fruiting body gill tissue | 81.82 | 48.84 | 114.79 |
| YFB_veil | Young fruiting body veil | 76.89 | 45.96 | 107.83 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.000613 | yes |
| Casing | YFB_stipe_center | 0.078057 | no |
| Casing | YFB_stipe_shell | 0.250478 | no |
| Casing | YFB_stipe_skin | 0.004548 | yes |
| Casing | YFB_cap_skin | 0.000613 | yes |
| Casing | YFB_cap_tissue | 0.000613 | yes |
| Casing | YFB_gill_tissue | 0.000613 | yes |
| Casing | YFB_veil | 0.000613 | yes |
| Casing | Initials | 0.379285 | no |
| Casing | Pileal_Stipeal_center | 0.000613 | yes |
| Casing | Pileal_Stipeal_shell | 0.000613 | yes |
| Casing | DIF_stipe_center | 0.000613 | yes |
| Casing | DIF_stipe_shell | 0.001140 | yes |
| Casing | DIF_stipe_skin | 0.000613 | yes |
| Casing | DIF_cap_skin | 0.000613 | yes |
| Casing | DIF_cap_tissue | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_center | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_shell | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_skin | 0.024187 | yes |
| DIF_gill_tissue | YFB_cap_skin | 0.815431 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.963965 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.818173 | no |
| DIF_gill_tissue | YFB_veil | 0.933668 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.746615 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.447417 | no |
| YFB_stipe_center | YFB_cap_skin | 0.002525 | yes |
| YFB_stipe_center | YFB_cap_tissue | 0.000613 | yes |
| YFB_stipe_center | YFB_gill_tissue | 0.003765 | yes |
| YFB_stipe_center | YFB_veil | 0.000613 | yes |
| YFB_stipe_shell | YFB_stipe_skin | 0.175423 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.000613 | yes |
| YFB_stipe_shell | YFB_cap_tissue | 0.000613 | yes |
| YFB_stipe_shell | YFB_gill_tissue | 0.000613 | yes |
| YFB_stipe_shell | YFB_veil | 0.000613 | yes |
| YFB_stipe_skin | YFB_cap_skin | 0.072862 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.016669 | yes |
| YFB_stipe_skin | YFB_gill_tissue | 0.079479 | no |
| YFB_stipe_skin | YFB_veil | 0.038495 | yes |
| YFB_cap_skin | YFB_cap_tissue | 0.765593 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.999257 | no |
| YFB_cap_skin | YFB_veil | 0.903152 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.764321 | no |
| YFB_cap_tissue | YFB_veil | 0.892813 | no |
| YFB_gill_tissue | YFB_veil | 0.902876 | no |
| Initials | DIF_gill_tissue | 0.000613 | yes |
| Initials | YFB_stipe_center | 0.575268 | no |
| Initials | YFB_stipe_shell | 0.894140 | no |
| Initials | YFB_stipe_skin | 0.097943 | no |
| Initials | YFB_cap_skin | 0.000613 | yes |
| Initials | YFB_cap_tissue | 0.000613 | yes |
| Initials | YFB_gill_tissue | 0.000613 | yes |
| Initials | YFB_veil | 0.000613 | yes |
| Initials | Pileal_Stipeal_center | 0.008121 | yes |
| Initials | Pileal_Stipeal_shell | 0.000613 | yes |
| Initials | DIF_stipe_center | 0.025711 | yes |
| Initials | DIF_stipe_shell | 0.057550 | no |
| Initials | DIF_stipe_skin | 0.021846 | yes |
| Initials | DIF_cap_skin | 0.000613 | yes |
| Initials | DIF_cap_tissue | 0.000613 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.159996 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.102673 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.027451 | yes |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.597707 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.346529 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.125875 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.358572 | no |
| Pileal_Stipeal_center | YFB_veil | 0.218856 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.091330 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.868021 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.689236 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.930464 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.108995 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.070862 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.889518 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.000613 | yes |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.000613 | yes |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.012577 | yes |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.660410 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.930441 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.661295 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.802887 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.039390 | yes |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.015529 | yes |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.061277 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.975453 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.967953 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.073043 | no |
| DIF_stipe_center | YFB_stipe_center | 0.196757 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.054982 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.791691 | no |
| DIF_stipe_center | YFB_cap_skin | 0.195682 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.056760 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.207757 | no |
| DIF_stipe_center | YFB_veil | 0.108850 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.872121 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.950766 | no |
| DIF_stipe_center | DIF_cap_skin | 0.045911 | yes |
| DIF_stipe_center | DIF_cap_tissue | 0.024444 | yes |
| DIF_stipe_shell | DIF_gill_tissue | 0.029890 | yes |
| DIF_stipe_shell | YFB_stipe_center | 0.345996 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.117172 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.939180 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.102830 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.020790 | yes |
| DIF_stipe_shell | YFB_gill_tissue | 0.108995 | no |
| DIF_stipe_shell | YFB_veil | 0.054170 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.812044 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.016386 | yes |
| DIF_stipe_shell | DIF_cap_tissue | 0.008457 | yes |
| DIF_stipe_skin | DIF_gill_tissue | 0.113653 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.161568 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.040501 | yes |
| DIF_stipe_skin | YFB_stipe_skin | 0.720859 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.267165 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.086070 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.279861 | no |
| DIF_stipe_skin | YFB_veil | 0.163833 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.071598 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.042475 | yes |
| DIF_cap_skin | DIF_gill_tissue | 0.920020 | no |
| DIF_cap_skin | YFB_stipe_center | 0.000613 | yes |
| DIF_cap_skin | YFB_stipe_shell | 0.000613 | yes |
| DIF_cap_skin | YFB_stipe_skin | 0.011968 | yes |
| DIF_cap_skin | YFB_cap_skin | 0.699317 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.956426 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.701898 | no |
| DIF_cap_skin | YFB_veil | 0.840397 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.940475 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.845991 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.000613 | yes |
| DIF_cap_tissue | YFB_stipe_shell | 0.000613 | yes |
| DIF_cap_tissue | YFB_stipe_skin | 0.009123 | yes |
| DIF_cap_tissue | YFB_cap_skin | 0.604297 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.891438 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.605883 | no |
| DIF_cap_tissue | YFB_veil | 0.752092 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|005670 MPSEPTLKNVVVTGGAGYIGSHVIYTLQKARQYKVISIDNHHNSQSAALDRVSRLSKSELPENATATERETTEID AHTCDLTKPEQIRAVFEKYGKGGIWGVVHIAAYKAVGESTEVPLTYYANNVSASVSLLQIMNEYDCRRIVYSSSA TVYGTPPIIPIPETTRLEAHSPYGKTKVMVETIIEDLCQSDPRWRAISLRYFNPAGAHPSGLIGEDPRGRPGNLL PLLAQMAVGRVKDTVLKVFGNDYPTPDGTCVRDYLHVLDLSKGHVLALNALAGNSKIFSGKQEAFFKAYNLGKGK GMSVLQIAEAMRKATGFDYKYEIIGRRRGDVPDLTADPALAEKELGFEASQDLETMCRDLWNWQSKNPLGAKSTK REKTSTSTLTHPG* |
| Coding | >AgabiH97|005670 ATGCCCTCTGAGCCGACTCTCAAAAACGTGGTCGTGACCGGCGGTGCTGGTTACATAGGCTCCCACGTCATATAC ACTCTCCAGAAGGCTAGGCAATACAAAGTCATATCGATAGACAACCACCACAACTCCCAATCTGCTGCTCTAGAT CGGGTGTCTCGACTCTCGAAAAGTGAACTTCCCGAGAATGCGACCGCTACTGAGCGGGAAACTACAGAAATCGAC GCCCATACCTGTGACCTCACAAAGCCGGAGCAAATCAGAGCTGTTTTTGAGAAGTACGGAAAAGGTGGCATCTGG GGTGTTGTGCATATCGCGGCCTACAAAGCCGTTGGAGAGTCAACAGAAGTGCCTCTAACTTACTACGCCAACAAT GTGTCTGCCTCGGTATCACTCCTGCAGATCATGAATGAGTATGACTGCAGAAGGATTGTGTATTCTTCGTCTGCC ACAGTTTATGGTACACCGCCCATCATTCCTATCCCCGAAACAACGCGTCTAGAAGCACACAGCCCATACGGCAAG ACAAAGGTGATGGTCGAGACCATTATAGAGGATCTATGCCAATCGGATCCGAGATGGAGAGCAATTTCCCTTCGC TACTTCAATCCTGCAGGTGCTCATCCCTCGGGTCTGATTGGTGAAGATCCTCGAGGGCGCCCTGGAAACCTACTC CCGTTACTCGCTCAAATGGCTGTCGGGCGAGTCAAAGACACAGTTCTGAAAGTATTTGGAAACGACTACCCTACG CCCGACGGAACTTGCGTCCGCGATTATCTACATGTTCTAGATCTTTCGAAGGGCCATGTCCTGGCACTAAACGCT TTAGCTGGAAATTCAAAGATCTTCAGCGGAAAGCAGGAGGCATTCTTCAAAGCATATAACCTTGGGAAAGGTAAG GGAATGAGTGTTCTTCAAATTGCCGAAGCCATGCGCAAGGCTACTGGATTTGACTACAAATATGAGATCATTGGA AGGCGGCGCGGCGACGTTCCAGATTTGACAGCGGATCCTGCGCTGGCTGAGAAGGAGCTCGGATTTGAGGCTTCC CAGGATCTTGAGACCATGTGCCGAGATCTCTGGAATTGGCAGAGCAAGAATCCCCTTGGAGCCAAAAGCACGAAA AGGGAAAAAACCAGTACTTCGACGCTGACGCATCCTGGATAA |
| Transcript | >AgabiH97|005670 ATGCCCTCTGAGCCGACTCTCAAAAACGTGGTCGTGACCGGCGGTGCTGGTTACATAGGCTCCCACGTCATATAC ACTCTCCAGAAGGCTAGGCAATACAAAGTCATATCGATAGACAACCACCACAACTCCCAATCTGCTGCTCTAGAT CGGGTGTCTCGACTCTCGAAAAGTGAACTTCCCGAGAATGCGACCGCTACTGAGCGGGAAACTACAGAAATCGAC GCCCATACCTGTGACCTCACAAAGCCGGAGCAAATCAGAGCTGTTTTTGAGAAGTACGGAAAAGGTGGCATCTGG GGTGTTGTGCATATCGCGGCCTACAAAGCCGTTGGAGAGTCAACAGAAGTGCCTCTAACTTACTACGCCAACAAT GTGTCTGCCTCGGTATCACTCCTGCAGATCATGAATGAGTATGACTGCAGAAGGATTGTGTATTCTTCGTCTGCC ACAGTTTATGGTACACCGCCCATCATTCCTATCCCCGAAACAACGCGTCTAGAAGCACACAGCCCATACGGCAAG ACAAAGGTGATGGTCGAGACCATTATAGAGGATCTATGCCAATCGGATCCGAGATGGAGAGCAATTTCCCTTCGC TACTTCAATCCTGCAGGTGCTCATCCCTCGGGTCTGATTGGTGAAGATCCTCGAGGGCGCCCTGGAAACCTACTC CCGTTACTCGCTCAAATGGCTGTCGGGCGAGTCAAAGACACAGTTCTGAAAGTATTTGGAAACGACTACCCTACG CCCGACGGAACTTGCGTCCGCGATTATCTACATGTTCTAGATCTTTCGAAGGGCCATGTCCTGGCACTAAACGCT TTAGCTGGAAATTCAAAGATCTTCAGCGGAAAGCAGGAGGCATTCTTCAAAGCATATAACCTTGGGAAAGGTAAG GGAATGAGTGTTCTTCAAATTGCCGAAGCCATGCGCAAGGCTACTGGATTTGACTACAAATATGAGATCATTGGA AGGCGGCGCGGCGACGTTCCAGATTTGACAGCGGATCCTGCGCTGGCTGAGAAGGAGCTCGGATTTGAGGCTTCC CAGGATCTTGAGACCATGTGCCGAGATCTCTGGAATTGGCAGAGCAAGAATCCCCTTGGAGCCAAAAGCACGAAA AGGGAAAAAACCAGTACTTCGACGCTGACGCATCCTGGATAA |
| Gene | >AgabiH97|005670 ATGCCCTCTGAGCCGACTCTCAAAGTAGGTCCACATTACATGCGATCACACCTGCTAGCTAACGAATCGAACAGA ACGTGGTCGTGACCGGCGGTGCTGGTTACATAGGCATGCTCTGTCCTGATCGTCCTTCTCTCACAACTTAGCAGG TATCTCTAGGCTCCCACGTCATATACACTCTCCAGAAGGCTAGGCAATACAAAGTCATATCGATAGACAACCACC ACAACTCCCAATCTGCTGCTCTAGATCGGGTGTCTCGACTCTCGAAAAGTGAACTTCCCGAGAATGCGACCGCTA CTGAGCGGGAAACTACAGAAATCGACGCCCATACCTGTGACCTCACAAAGCCGGAGCAAATCAGAGCTGTTTTTG AGAAGTACGGAAAAGGTGGCATCTGGGGTGTTGTGCATATCGCGGTGAGTCTCGTTCTAGGTCTTCCTCCGCTGC CTAATGCCTTTTCTTTTCTAGGCCTACAAAGCCGTTGGAGAGTCAACAGAAGTGCCTCTAACTTACTACGCCAAC AATGTGTCTGCCTCGGTATCACTCCTGCAGATCATGAATGAGTATGACTGCAGAAGGATTGTGTATTCTTCGTCT GCCACAGTTTATGGTACACCGCCCATCATTCCTATCCCCGAAACAACGCGTCTAGAAGCACACAGCCCATACGGC AAGACAAAGGTGATGGTCGAGACCATTATAGAGGATCTATGCCAATGTACGCCTAAAAATATCTTACGAAAACTA CTGTTCCTGACTGTCGTACAGCGGATCCGAGATGGAGAGCAATTTCCCTTCGCTACTTCAAGTGGGATAATATAT CTATACGTCGAAATATTCTCTTAATTGTTTGCTAGTCCTGCAGGTGCTCATCCCTCGGGTCTGATTGGTGAAGAT CCTCGAGGGCGCCCTGGAAACCTACTCCCGTTACTCGCTCAAATGGCTGTCGGGCGAGTCAAAGACACAGTTCTG AAAGTATTTGGAAACGACTACCCTACGCCGTGCGTTGCGTACTATTTCCTATCGATCAAACTTACGGCGTATATA GCGACGGAACTTGCGTCCGCGATTATCTACATGTTCTAGATCTTTCGAAGGGCCATGTCCTGGCACTAAACGCTT TAGCTGGAAATTCAAAGATCTTCAGCGGAAAGCAGGAGGCATTCTTCAAAGCATATAACCTTGGGAAAGGTAAGG GAATGAGTGTTCTTCAAATTGCCGAAGCCATGCGCAAGGCTACTGGATTTGACTACAAATATGAGATCATTGGAA GGCGGTAAGCTTCTAAACCTTTGTCTCACCACTTGGCAGTGCTCAGCCTCATCTTGATTAGGCGCGGCGACGTTC CAGATTTGACAGCGGATCCTGCGCTGGCTGAGAAGGAGCTCGGATTTGAGGCTTCCCAGGATCTTGAGACCATGT GCCGAGATCTCTGGAATTGGCAGAGCAAGAATCCCCTTGGGTATGGAGAAAAGTGATGGCATCTTGTATGACCCT GTTAACAACACCAGTTGTCGAGTTGCAGATAAGTTAGTTAGTTAAATGCGCACTTTTGTGGAACCACTCCACACC CTTTTGTGCAATTTTTTCGTGGTCTAGTTTTGACGTGAAGTTATGGATATCCCGGTTTTTTCTTCATGTAATGGC ATCGAAAATCAGTTTTACAGGCAGACAGGATCACTTGACTTACATTTTCTACTTTCAGAGCCAAAAGCACGAAAA GGGAAAAAACCAGTACTTCGACGCTGACGCATCCTGGTGCGTTTTTCCCATGAATCCCTGACGGTTAGCTTTTTC ATGTCCCCAAAGGATAA |