© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|005540 |
| Gene name | |
| Location | scaffold_1:1371536..1373622 |
| Strand | + |
| Gene length (bp) | 2086 |
| Transcript length (bp) | 1929 |
| Coding sequence length (bp) | 1929 |
| Protein length (aa) | 643 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 5.7E-09 | 113 | 154 |
| PF13639 | zf-RING_2 | Ring finger domain | 8.4E-08 | 112 | 154 |
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | 4.2E-08 | 113 | 152 |
| PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | 2.6E-06 | 113 | 154 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q32NQ8|RNF10_XENLA | RING finger protein 10 OS=Xenopus laevis GN=rnf10 PE=2 SV=1 | 12 | 535 | 4.0E-54 |
| sp|Q08E13|RNF10_BOVIN | RING finger protein 10 OS=Bos taurus GN=RNF10 PE=2 SV=1 | 12 | 509 | 3.0E-51 |
| sp|Q8N5U6|RNF10_HUMAN | RING finger protein 10 OS=Homo sapiens GN=RNF10 PE=1 SV=2 | 12 | 509 | 4.0E-51 |
| sp|Q5XI59|RNF10_RAT | RING finger protein 10 OS=Rattus norvegicus GN=Rnf10 PE=2 SV=1 | 12 | 307 | 2.0E-37 |
| sp|Q3UIW5|RNF10_MOUSE | RING finger protein 10 OS=Mus musculus GN=Rnf10 PE=2 SV=2 | 12 | 303 | 2.0E-37 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q32NQ8|RNF10_XENLA | RING finger protein 10 OS=Xenopus laevis GN=rnf10 PE=2 SV=1 | 12 | 535 | 4.0E-54 |
| sp|Q08E13|RNF10_BOVIN | RING finger protein 10 OS=Bos taurus GN=RNF10 PE=2 SV=1 | 12 | 509 | 3.0E-51 |
| sp|Q8N5U6|RNF10_HUMAN | RING finger protein 10 OS=Homo sapiens GN=RNF10 PE=1 SV=2 | 12 | 509 | 4.0E-51 |
| sp|Q5XI59|RNF10_RAT | RING finger protein 10 OS=Rattus norvegicus GN=Rnf10 PE=2 SV=1 | 12 | 307 | 2.0E-37 |
| sp|Q3UIW5|RNF10_MOUSE | RING finger protein 10 OS=Mus musculus GN=Rnf10 PE=2 SV=2 | 12 | 303 | 2.0E-37 |
| sp|O94271|YORN_SCHPO | Uncharacterized RING finger protein P8B7.23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP8B7.23 PE=3 SV=1 | 6 | 271 | 7.0E-34 |
| sp|O94271|YORN_SCHPO | Uncharacterized RING finger protein P8B7.23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP8B7.23 PE=3 SV=1 | 408 | 581 | 3.0E-20 |
| sp|Q06436|MAG2_YEAST | RING-finger protein MAG2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAG2 PE=1 SV=1 | 17 | 170 | 5.0E-16 |
| sp|Q5XI59|RNF10_RAT | RING finger protein 10 OS=Rattus norvegicus GN=Rnf10 PE=2 SV=1 | 408 | 509 | 1.0E-09 |
| sp|Q3UIW5|RNF10_MOUSE | RING finger protein 10 OS=Mus musculus GN=Rnf10 PE=2 SV=2 | 407 | 509 | 1.0E-09 |
| sp|Q06436|MAG2_YEAST | RING-finger protein MAG2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAG2 PE=1 SV=1 | 404 | 481 | 4.0E-08 |
| sp|Q9FF61|SM3L1_ARATH | Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1 | 106 | 163 | 5.0E-08 |
| sp|Q864U1|BRCA1_BOVIN | Breast cancer type 1 susceptibility protein homolog OS=Bos taurus GN=BRCA1 PE=1 SV=1 | 113 | 175 | 2.0E-06 |
| sp|Q6J6J0|BRCA1_PONPY | Breast cancer type 1 susceptibility protein homolog OS=Pongo pygmaeus GN=BRCA1 PE=3 SV=1 | 113 | 175 | 2.0E-06 |
| sp|P38398|BRCA1_HUMAN | Breast cancer type 1 susceptibility protein OS=Homo sapiens GN=BRCA1 PE=1 SV=2 | 113 | 175 | 2.0E-06 |
| sp|O54952|BRCA1_RAT | Breast cancer type 1 susceptibility protein homolog OS=Rattus norvegicus GN=Brca1 PE=1 SV=1 | 113 | 182 | 2.0E-06 |
| sp|Q6J6I9|BRCA1_MACMU | Breast cancer type 1 susceptibility protein homolog OS=Macaca mulatta GN=BRCA1 PE=3 SV=1 | 113 | 175 | 2.0E-06 |
| sp|Q9GKK8|BRCA1_PANTR | Breast cancer type 1 susceptibility protein homolog OS=Pan troglodytes GN=BRCA1 PE=2 SV=2 | 113 | 175 | 2.0E-06 |
| sp|Q6J6I8|BRCA1_GORGO | Breast cancer type 1 susceptibility protein homolog OS=Gorilla gorilla gorilla GN=BRCA1 PE=3 SV=1 | 113 | 175 | 2.0E-06 |
| sp|Q95153|BRCA1_CANLF | Breast cancer type 1 susceptibility protein homolog OS=Canis lupus familiaris GN=BRCA1 PE=3 SV=1 | 113 | 175 | 3.0E-06 |
| sp|Q5PPX5|RN170_XENLA | E3 ubiquitin-protein ligase RNF170 OS=Xenopus laevis GN=rnf170 PE=2 SV=1 | 102 | 159 | 3.0E-06 |
| sp|Q28DS3|RN170_XENTR | E3 ubiquitin-protein ligase RNF170 OS=Xenopus tropicalis GN=rnf170 PE=2 SV=1 | 102 | 159 | 5.0E-06 |
| sp|Q8CBG9|RN170_MOUSE | E3 ubiquitin-protein ligase RNF170 OS=Mus musculus GN=Rnf170 PE=1 SV=1 | 101 | 159 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0043169 | cation binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|005540 MSGLPSHRTAKPAASNLNHLLNFSLPPRQSRPLSSLPRRARKTGNSHGIWNKERFVNAQYRFVMNPNGDYTAHFA DPDIFFQWQDILQVIIPRSPVLTFASPSFSQDDNQTACPICLSPPTAPRMTKCGHIFCFSCILHYLSTSDNKWVR CPICFDSVTERQLKSVKWFDGLVHDSDNVVDSPPVPSSSSSVIDNTFESMPALGSSLSMRLIQRPQITTLALPRS HTWPSDLLPPHQAPFHFLPDVYSFAKFMLATPAHLISDLTGDLDQLASERRTLASFDDDLGTCFIDAAETRVRLQ IAAAAALDTPALKAKVEKAIRDKTDLEERTAFHQMRRKNEQLARKVPQEEVPVDFLAIKSPSTHSSAPSTPAEFE TDTPREVSARLQPRNHPKQRRNVNPPPPNTQTYYYYQAASGLPIYLHPLDIRILLSHFGTYPAFPGTITVKVEGY SESTIDDNLRKRCKYLAHLPEGADVVFVEADLEDVVGADSLKNFESLLKSRILRRKEKGKKDDKAKARAEERERE REKHWASSLVYSSSRPEAIAIQEIVDHSSSSTSELENSSSLPRQNSGAWGTKSFASALHSPSTPVNDNRGQDKPR EKKEDEWDMDAAWHELQQQRSGGGKKKNTKLVILGGGGGRRR* |
| Coding | >AgabiH97|005540 ATGTCTGGCCTGCCCTCCCACCGCACGGCCAAGCCTGCTGCATCCAATCTGAACCATCTCCTCAACTTCTCCCTC CCTCCTAGACAGTCTCGGCCGCTTTCCTCCCTCCCCCGCAGGGCCAGAAAGACAGGAAACAGCCATGGCATCTGG AACAAAGAACGCTTCGTCAATGCCCAGTATCGGTTCGTCATGAACCCCAACGGCGACTACACCGCCCATTTCGCA GATCCAGACATTTTCTTCCAGTGGCAGGACATACTGCAGGTCATCATACCCCGGTCGCCGGTCCTGACGTTTGCT TCCCCCTCGTTCTCTCAGGACGATAATCAGACTGCCTGCCCTATTTGCCTATCTCCCCCTACCGCCCCTCGTATG ACCAAGTGTGGCCATATCTTCTGTTTCTCGTGCATCCTCCATTACCTGAGCACTTCAGACAATAAATGGGTCCGC TGCCCAATCTGCTTTGACTCGGTCACCGAACGCCAGCTCAAGTCTGTCAAGTGGTTCGATGGGCTCGTCCATGAC TCTGATAATGTCGTGGATTCTCCGCCAGTACCCTCATCGTCTTCGTCCGTCATTGATAACACCTTTGAGAGTATG CCTGCCCTGGGATCGTCTCTGAGTATGCGCCTTATACAGCGGCCGCAAATAACTACACTAGCTCTACCCCGTTCG CATACATGGCCTTCTGATCTGCTGCCGCCCCACCAGGCCCCGTTCCACTTTCTCCCCGATGTCTACAGTTTCGCT AAATTCATGCTCGCCACGCCGGCACATCTCATCTCGGATCTCACTGGTGATTTGGATCAATTGGCTTCCGAGCGT CGGACGCTCGCAAGCTTCGACGACGACCTAGGAACCTGTTTCATTGATGCGGCCGAAACTAGAGTGCGTCTTCAG ATCGCAGCGGCGGCGGCTCTAGATACTCCTGCTTTGAAGGCCAAGGTTGAAAAGGCTATCAGGGATAAAACTGAT CTCGAGGAGCGAACGGCTTTCCATCAAATGAGGAGAAAAAATGAGCAACTTGCACGCAAAGTACCTCAGGAAGAA GTACCGGTGGATTTTCTTGCTATCAAATCACCAAGCACCCATTCGTCCGCACCATCTACACCCGCCGAATTCGAG ACGGATACCCCTCGCGAGGTCTCGGCACGCCTACAACCTCGCAATCACCCCAAACAACGACGCAACGTCAATCCG CCGCCACCAAATACCCAGACGTATTACTACTATCAGGCTGCGTCTGGCTTACCGATCTACCTCCATCCACTCGAT ATCCGAATATTGCTCTCGCATTTTGGCACCTATCCCGCATTCCCCGGCACTATCACTGTGAAAGTTGAGGGCTAC TCGGAGAGTACAATTGACGACAACCTACGGAAACGCTGTAAATATCTTGCGCATCTACCAGAGGGTGCCGATGTT GTATTCGTAGAAGCCGACCTAGAAGATGTCGTGGGTGCTGACTCACTCAAGAATTTTGAGTCGTTGCTGAAATCC CGGATTCTACGGAGGAAAGAGAAAGGAAAGAAGGATGACAAGGCAAAGGCGAGGGCGGAGGAACGAGAGAGGGAG AGAGAGAAGCATTGGGCGTCGTCTCTGGTCTATTCTAGCTCTCGACCAGAAGCAATTGCAATTCAGGAAATTGTG GACCACTCCTCGTCGTCCACTTCGGAATTAGAGAATTCATCGTCACTGCCCCGACAGAACTCAGGCGCATGGGGC ACCAAGAGCTTTGCGTCGGCGCTGCATTCGCCTTCAACGCCTGTCAATGATAATCGTGGACAAGATAAGCCAAGA GAAAAGAAAGAGGATGAATGGGATATGGATGCGGCTTGGCATGAGTTGCAACAACAGAGGAGTGGTGGTGGCAAG AAGAAGAATACAAAGCTTGTAATTCTTGGGGGCGGAGGTGGGAGACGGCGTTGA |
| Transcript | >AgabiH97|005540 ATGTCTGGCCTGCCCTCCCACCGCACGGCCAAGCCTGCTGCATCCAATCTGAACCATCTCCTCAACTTCTCCCTC CCTCCTAGACAGTCTCGGCCGCTTTCCTCCCTCCCCCGCAGGGCCAGAAAGACAGGAAACAGCCATGGCATCTGG AACAAAGAACGCTTCGTCAATGCCCAGTATCGGTTCGTCATGAACCCCAACGGCGACTACACCGCCCATTTCGCA GATCCAGACATTTTCTTCCAGTGGCAGGACATACTGCAGGTCATCATACCCCGGTCGCCGGTCCTGACGTTTGCT TCCCCCTCGTTCTCTCAGGACGATAATCAGACTGCCTGCCCTATTTGCCTATCTCCCCCTACCGCCCCTCGTATG ACCAAGTGTGGCCATATCTTCTGTTTCTCGTGCATCCTCCATTACCTGAGCACTTCAGACAATAAATGGGTCCGC TGCCCAATCTGCTTTGACTCGGTCACCGAACGCCAGCTCAAGTCTGTCAAGTGGTTCGATGGGCTCGTCCATGAC TCTGATAATGTCGTGGATTCTCCGCCAGTACCCTCATCGTCTTCGTCCGTCATTGATAACACCTTTGAGAGTATG CCTGCCCTGGGATCGTCTCTGAGTATGCGCCTTATACAGCGGCCGCAAATAACTACACTAGCTCTACCCCGTTCG CATACATGGCCTTCTGATCTGCTGCCGCCCCACCAGGCCCCGTTCCACTTTCTCCCCGATGTCTACAGTTTCGCT AAATTCATGCTCGCCACGCCGGCACATCTCATCTCGGATCTCACTGGTGATTTGGATCAATTGGCTTCCGAGCGT CGGACGCTCGCAAGCTTCGACGACGACCTAGGAACCTGTTTCATTGATGCGGCCGAAACTAGAGTGCGTCTTCAG ATCGCAGCGGCGGCGGCTCTAGATACTCCTGCTTTGAAGGCCAAGGTTGAAAAGGCTATCAGGGATAAAACTGAT CTCGAGGAGCGAACGGCTTTCCATCAAATGAGGAGAAAAAATGAGCAACTTGCACGCAAAGTACCTCAGGAAGAA GTACCGGTGGATTTTCTTGCTATCAAATCACCAAGCACCCATTCGTCCGCACCATCTACACCCGCCGAATTCGAG ACGGATACCCCTCGCGAGGTCTCGGCACGCCTACAACCTCGCAATCACCCCAAACAACGACGCAACGTCAATCCG CCGCCACCAAATACCCAGACGTATTACTACTATCAGGCTGCGTCTGGCTTACCGATCTACCTCCATCCACTCGAT ATCCGAATATTGCTCTCGCATTTTGGCACCTATCCCGCATTCCCCGGCACTATCACTGTGAAAGTTGAGGGCTAC TCGGAGAGTACAATTGACGACAACCTACGGAAACGCTGTAAATATCTTGCGCATCTACCAGAGGGTGCCGATGTT GTATTCGTAGAAGCCGACCTAGAAGATGTCGTGGGTGCTGACTCACTCAAGAATTTTGAGTCGTTGCTGAAATCC CGGATTCTACGGAGGAAAGAGAAAGGAAAGAAGGATGACAAGGCAAAGGCGAGGGCGGAGGAACGAGAGAGGGAG AGAGAGAAGCATTGGGCGTCGTCTCTGGTCTATTCTAGCTCTCGACCAGAAGCAATTGCAATTCAGGAAATTGTG GACCACTCCTCGTCGTCCACTTCGGAATTAGAGAATTCATCGTCACTGCCCCGACAGAACTCAGGCGCATGGGGC ACCAAGAGCTTTGCGTCGGCGCTGCATTCGCCTTCAACGCCTGTCAATGATAATCGTGGACAAGATAAGCCAAGA GAAAAGAAAGAGGATGAATGGGATATGGATGCGGCTTGGCATGAGTTGCAACAACAGAGGAGTGGTGGTGGCAAG AAGAAGAATACAAAGCTTGTAATTCTTGGGGGCGGAGGTGGGAGACGGCGTTGA |
| Gene | >AgabiH97|005540 ATGTCTGGCCTGCCCTCCCACCGCACGGCCAAGCCTGCTGCATCCAATCTGAACCATCTCCTCAACTTCTCCCTC CCTCCTAGACAGTCTCGGCCGCTTTCCTCCCTCCCCCGCAGGGCCAGAAAGACAGGAAACAGCCATGGCATCTGG AACAAAGAACGTGAGCTCCCCGTCGTTTTTCTCTCTTTGCTCACCCTCAGCACCCCCCAGGCTTCGTCAATGCCC AGTATCGGTTCGTCATGAACCCCAACGGCGACTACACCGCCCATTTCGCAGATCCAGACATGCACGTATCTCACA CTACGTCTCTTGACCCCCCTTGTTCATCCCCTGTGCTAGTTTCTTCCAGTGGCAGGACATACTGCAGGTCATCAT ACCCCGGTCGCCGGTCCTGACGTTTGCTTCCCCCTCGTTCTCTCAGGACGATAATCAGACTGCCTGCCCTATTTG CCTATCTCCCCCTACCGCCCCTCGTATGACCAAGTGTGGCCATGTAAGTCCCCTATCGTATTTCTCCTACTTATC CTTATGATTCGCCCCTATCTAGATCTTCTGTTTCTCGTGCATCCTCCATTACCTGAGCACTTCAGACAATAAATG GGTCCGCTGCCCAATCTGCTTTGACTCGGTCACCGAACGCCAGCTCAAGTCTGTCAAGTGGTTCGATGGGCTCGT CCATGACTCTGATAATGTCGTGGATTCTCCGCCAGTACCCTCATCGTCTTCGTCCGTCATTGATAACACCTTTGA GAGTATGCCTGCCCTGGGATCGTCTCTGAGTATGCGCCTTATACAGCGGCCGCAAATAACTACACTAGCTCTACC CCGTTCGCATACATGGCCTTCTGATCTGCTGCCGCCCCACCAGGCCCCGTTCCACTTTCTCCCCGATGTCTACAG TTTCGCTAAATTCATGCTCGCCACGCCGGCACATCTCATCTCGGATCTCACTGGTGATTTGGATCAATTGGCTTC CGAGCGTCGGACGCTCGCAAGCTTCGACGACGACCTAGGAACCTGTTTCATTGATGCGGCCGAAACTAGAGTGCG TCTTCAGATCGCAGCGGCGGCGGCTCTAGATACTCCTGCTTTGAAGGCCAAGGTTGAAAAGGCTATCAGGGATAA AACTGATCTCGAGGAGCGAACGGCTTTCCATCAAATGAGGAGAAAAAATGAGCAACTTGCACGCAAAGTACCTCA GGAAGAAGTACCGGTGGATTTTCTTGCTATCAAATCACCAAGCACCCATTCGTCCGCACCATCTACACCCGCCGA ATTCGAGACGGATACCCCTCGCGAGGTCTCGGCACGCCTACAACCTCGCAATCACCCCAAACAACGACGCAACGT CAATCCGCCGCCACCAAATACCCAGACGTATTACTACTATCAGGCTGCGTCTGGCTTACCGATCTACCTCCATCC ACTCGATATCCGAATATTGCTCTCGCATTTTGGCACCTATCCCGCATTCCCCGGCACTATCACTGTGAAAGTTGA GGGCTACTCGGAGAGTACAATTGACGACAACCTACGGAAACGCTGTAAATATCTTGCGCATCTACCAGAGGGTGC CGATGTTGTATTCGTAGAAGCCGACCTAGAAGATGTCGTGGGTGCTGACTCACTCAAGAATTTTGAGTCGTTGCT GAAATCCCGGATTCTACGGAGGAAAGAGAAAGGAAAGAAGGATGACAAGGCAAAGGCGAGGGCGGAGGAACGAGA GAGGGAGAGAGAGAAGCATTGGGCGTCGTCTCTGGTCTATTCTAGCTCTCGACCAGAAGCAATTGCAATTCAGGA AATTGTGGACCACTCCTCGTCGTCCACTTCGGAATTAGAGAATTCATCGTCACTGCCCCGACAGAACTCAGGCGC ATGGGGCACCAAGAGCTTTGCGTCGGCGCTGCATTCGCCTTCAACGCCTGTCAATGATAATCGTGGACAAGATAA GCCAAGAGAAAAGAAAGAGGATGAATGGGATATGGATGCGGCTTGGCATGAGTTGCAACAACAGAGGAGTGGTGG TGGCAAGAAGAAGAATACAAAGCTTGTAATTCTTGGGGGCGGAGGTGGGAGACGGCGTTGA |