Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|004870
Gene name
Locationscaffold_1:1205825..1206943
Strand+
Gene length (bp)1118
Transcript length (bp)999
Coding sequence length (bp)999
Protein length (aa) 333

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00010 HLH Helix-loop-helix DNA-binding domain 5.0E-10 202 250

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0046983 protein dimerization activity Yes
GO:0003674 molecular_function No
GO:0005515 protein binding No
GO:0005488 binding No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal 0.5091 0.9089 0.0359 0.0243 0.3015 0.0001 0.0522 0.0806 0.0298 0.006

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Helix-loop-helix

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup762
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|004870
Agaricus bisporus var bisporus H39 AgabiH39|004900
Agaricus bisporus var bisporus H97 AgabiH97|004870 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|004900
Rhodonia placenta FPRL280 RhoplFPRL280|38_30

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|004870
MDQHPMQDDSSIPPPTYGFYPTEQDPSSYNMSAYNGHMPYHVVHPNPPQRQQQLVSDLQPAGLHPYPNIPLIPHQ
FHHANVYSSSPPHGSLPLSNSPPPPSPPEMYDPLSPPISGSDTSADGLYHHSNHSNSSSINSPAPSRANSLVHRT
NVRYNPTPSPTSSSGRRRSRSRDSDEEDPMGLAAYNHPAVENLAHTRKEATRRQRIEAEQRRRDELRDGYAKLKD
ALPVSNQKSSKVSLLERATNHIMLLEKTNQDLKARINALEQEMARLRGINEKISLGSTDLVPSVFEGKTLAVTDA
SALTPPASAHVKLQLSTPERPSSAVPSEHEQL*
Coding >AgabiH97|004870
ATGGACCAACATCCCATGCAAGACGACTCTTCGATTCCACCGCCGACATACGGTTTCTATCCAACAGAGCAGGAC
CCTTCCTCCTACAACATGTCTGCGTACAATGGACACATGCCCTACCACGTCGTTCACCCCAACCCTCCGCAACGC
CAGCAGCAGCTCGTCTCAGACCTGCAGCCAGCAGGGTTGCATCCATACCCCAACATTCCTCTGATACCTCATCAA
TTTCACCACGCCAACGTGTATTCGTCCTCGCCGCCTCATGGCTCCCTGCCCCTTTCAAATTCTCCCCCACCCCCT
TCCCCACCCGAGATGTATGATCCTCTCTCCCCACCTATATCCGGATCAGACACCTCGGCGGACGGACTTTACCAC
CACTCCAACCACTCAAACAGCAGCAGCATCAACTCTCCCGCACCCTCTCGAGCAAACTCTCTTGTCCACCGCACC
AACGTCAGGTACAACCCTACCCCTTCTCCCACCAGCTCATCCGGTCGACGCCGCAGCCGCTCTCGCGATTCCGAC
GAAGAAGATCCCATGGGTCTCGCAGCCTACAACCACCCCGCCGTTGAAAACCTTGCCCACACTCGCAAAGAGGCT
ACCCGCAGACAGAGAATCGAGGCAGAACAGCGCAGACGAGACGAGTTGCGCGACGGCTACGCCAAACTAAAGGAC
GCCCTCCCTGTTTCCAACCAGAAAAGCAGCAAGGTTTCTCTTTTAGAGCGAGCCACCAATCATATTATGCTCTTA
GAAAAGACAAACCAAGATCTCAAAGCTCGTATAAATGCACTCGAGCAAGAAATGGCCAGGCTACGGGGTATCAAC
GAAAAAATATCCCTTGGAAGTACGGACCTCGTTCCTTCTGTCTTCGAAGGCAAGACTTTGGCCGTCACAGATGCT
TCAGCGCTTACTCCACCCGCGTCTGCCCATGTCAAGCTCCAGCTATCAACACCAGAGCGTCCCAGCTCTGCCGTT
CCCTCAGAGCATGAACAGTTGTAA
Transcript >AgabiH97|004870
ATGGACCAACATCCCATGCAAGACGACTCTTCGATTCCACCGCCGACATACGGTTTCTATCCAACAGAGCAGGAC
CCTTCCTCCTACAACATGTCTGCGTACAATGGACACATGCCCTACCACGTCGTTCACCCCAACCCTCCGCAACGC
CAGCAGCAGCTCGTCTCAGACCTGCAGCCAGCAGGGTTGCATCCATACCCCAACATTCCTCTGATACCTCATCAA
TTTCACCACGCCAACGTGTATTCGTCCTCGCCGCCTCATGGCTCCCTGCCCCTTTCAAATTCTCCCCCACCCCCT
TCCCCACCCGAGATGTATGATCCTCTCTCCCCACCTATATCCGGATCAGACACCTCGGCGGACGGACTTTACCAC
CACTCCAACCACTCAAACAGCAGCAGCATCAACTCTCCCGCACCCTCTCGAGCAAACTCTCTTGTCCACCGCACC
AACGTCAGGTACAACCCTACCCCTTCTCCCACCAGCTCATCCGGTCGACGCCGCAGCCGCTCTCGCGATTCCGAC
GAAGAAGATCCCATGGGTCTCGCAGCCTACAACCACCCCGCCGTTGAAAACCTTGCCCACACTCGCAAAGAGGCT
ACCCGCAGACAGAGAATCGAGGCAGAACAGCGCAGACGAGACGAGTTGCGCGACGGCTACGCCAAACTAAAGGAC
GCCCTCCCTGTTTCCAACCAGAAAAGCAGCAAGGTTTCTCTTTTAGAGCGAGCCACCAATCATATTATGCTCTTA
GAAAAGACAAACCAAGATCTCAAAGCTCGTATAAATGCACTCGAGCAAGAAATGGCCAGGCTACGGGGTATCAAC
GAAAAAATATCCCTTGGAAGTACGGACCTCGTTCCTTCTGTCTTCGAAGGCAAGACTTTGGCCGTCACAGATGCT
TCAGCGCTTACTCCACCCGCGTCTGCCCATGTCAAGCTCCAGCTATCAACACCAGAGCGTCCCAGCTCTGCCGTT
CCCTCAGAGCATGAACAGTTGTAA
Gene >AgabiH97|004870
ATGGACCAACATCCCATGCAAGACGACTCTTCGATTCCACCGCCGACATACGGTTTCTATCCAACAGAGCAGGAC
CCTTCCTCCTACAACATGTCTGCGTACAATGGACACATGCCCTACCACGTCGTTCACCCCAACCCTCCGCAACGT
GATGTTTCTTTCATTCTCGCCAACTCGTGCCCGCGATCTGATTGTCTTTTCTTTCATACAGGCCAGCAGCAGCTC
GTCTCAGACCTGCAGCCAGCAGGGTTGCATCCATACCCCAACATTCCTCTGATACCTCATCAATTTCACCACGCC
AACGTGTATTCGTCCTCGCCGCCTCATGGCTCCCTGCCCCTTTCAAATTCTCCCCCACCCCCTTCCCCACCCGAG
ATGTATGATCCTCTCTCCCCACCTATATCCGGATCAGACACCTCGGCGGACGGACTTTACCACCACTCCAACCAC
TCAAACAGCAGCAGCATCAACTCTCCCGCACCCTCTCGAGCAAACTCTCTTGTCCACCGCACCAACGTCAGGTAC
AACCCTACCCCTTCTCCCACCAGCTCATCCGGTCGACGCCGCAGCCGCTCTCGCGATTCCGACGAAGAAGATCCC
ATGGGTCTCGCAGCCTACAACCACCCCGCCGTTGAAAACCTTGCCCACACTCGCAAAGAGGCTACCCGCAGACAG
AGAATCGAGGCAGAACAGCGCAGACGAGACGAGTTGCGCGACGGCTACGCCAAACTAAAGGACGCCCTCCCTGTT
TCCAACCAGAAAAGCAGCAAGGTTTCTCTTTTAGAGCGAGGTAGGTTCACCCCTACCTTTCCATGTCTATTCTCT
CAAGTGTTCCATTTCTTCTAGCCACCAATCATATTATGCTCTTAGAAAAGACAAACCAAGATCTCAAAGCTCGTA
TAAATGCACTCGAGCAAGAAATGGCCAGGCTACGGGGTATCAACGAAAAAATATCCCTTGGAAGTACGGACCTCG
TTCCTTCTGTCTTCGAAGGCAAGACTTTGGCCGTCACAGATGCTTCAGCGCTTACTCCACCCGCGTCTGCCCATG
TCAAGCTCCAGCTATCAACACCAGAGCGTCCCAGCTCTGCCGTTCCCTCAGAGCATGAACAGTTGTAA

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