Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|004740
Gene name
Locationscaffold_1:1164007..1166246
Strand-
Gene length (bp)2239
Transcript length (bp)1596
Coding sequence length (bp)1596
Protein length (aa) 532

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04820 Trp_halogenase Tryptophan halogenase 6.6E-14 12 96
PF04820 Trp_halogenase Tryptophan halogenase 6.2E-17 109 390
PF01494 FAD_binding_3 FAD binding domain 1.1E-15 9 197
PF12831 FAD_oxidored FAD dependent oxidoreductase 1.0E-06 12 173

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q0VZ69|THAL_CHOCO Tryptophan 2-halogenase OS=Chondromyces crocatus GN=cmdE PE=4 SV=1 5 432 8.0E-70
sp|P96800|Y1602_METBF Uncharacterized protein Mbar_A1602 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=Mbar_A1602 PE=3 SV=2 12 354 4.0E-16
sp|P95482|PRNC_PSEFL Monodechloroaminopyrrolnitrin halogenase PrnC OS=Pseudomonas fluorescens GN=prnC PE=4 SV=1 12 335 1.0E-12
sp|P26484|FIXC_AZOC5 Protein FixC OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) GN=fixC PE=3 SV=2 13 349 1.0E-05
sp|Q6M083|GGR_METMP Digeranylgeranylglycerophospholipid reductase OS=Methanococcus maripaludis (strain S2 / LL) GN=MMP0388 PE=3 SV=1 12 403 1.0E-05

GO

GO Term Description Terminal node
GO:0004497 monooxygenase activity Yes
GO:0071949 FAD binding Yes
GO:0000166 nucleotide binding No
GO:0003674 molecular_function No
GO:0043167 ion binding No
GO:0005488 binding No
GO:0097159 organic cyclic compound binding No
GO:0016491 oxidoreductase activity No
GO:1901363 heterocyclic compound binding No
GO:0036094 small molecule binding No
GO:0003824 catalytic activity No
GO:0050660 flavin adenine dinucleotide binding No
GO:0043168 anion binding No
GO:1901265 nucleoside phosphate binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 25 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|004740
MPNAQLPSRTTVLVIGGGPAGAYAASALARENIDTIVIEAAKFPRYHIGESMLPSLNSFMRFIGAEEKLRDHGFT
TKLGAAVKFNQHKKEGYTDFTRGDVRNASCNVIRSEFDNMLLRHAEESGARVFEETKITDIEFETNGAEMRPTSA
TYTRKNGEVGVVHFDYLVDASGRNGIVSTKYLKNRKMNQSLHNLACWGYWTGQKQYMPNSSRHNAPWFESLTDES
GWAWFIPLHNGTVSVGIVMDSSISAQKKAEGRKATSDGNYTLRDHYLDQIQLVPGLKAFLEEATLKEDGEHYVIR
SAADYSYAADKYAGDHYRIIGDASAFIDPFFSSGVHLALLGGLTAAASIAASIKKQCAEEVAWKFHDVKVATAYT
RFLLVVMSAYKQIRNQSVAVLSDVDEDNFDRVFDIFRPVIQGNSDVGKNLSENELERTIDFCKDIFAPTDPEMIE
AVGARLRPELLAANSPILTNEEINIESQGDDEARIVLHRLNARKPVNQMYQGPDNLQVGDVGGYVAHIQVGALGL
VEVAST*
Coding >AgabiH97|004740
ATGCCAAACGCACAACTACCATCCCGCACCACTGTCCTTGTTATTGGCGGTGGACCTGCTGGTGCTTACGCGGCT
TCAGCTTTGGCCCGAGAGAACATCGACACCATCGTCATTGAGGCAGCCAAATTTCCTCGGTATCATATTGGCGAG
AGTATGCTTCCGTCCTTGAATTCGTTTATGCGATTTATTGGTGCTGAAGAAAAACTCCGAGACCATGGATTCACG
ACGAAACTTGGAGCAGCTGTAAAGTTTAACCAACATAAGAAAGAAGGCTATACTGATTTTACACGAGGCGATGTC
CGAAATGCGAGTTGTAACGTTATTCGCTCAGAATTCGACAACATGCTTCTACGCCACGCCGAGGAGTCGGGGGCT
CGAGTTTTTGAGGAAACAAAGATCACTGATATCGAATTCGAAACCAACGGAGCAGAGATGCGTCCTACTTCAGCA
ACCTATACACGGAAGAACGGCGAGGTTGGTGTAGTCCATTTTGATTACCTAGTGGATGCCTCTGGTAGGAATGGG
ATAGTCTCCACCAAGTACCTGAAAAACCGCAAAATGAATCAGAGCTTGCACAACCTCGCATGTTGGGGATATTGG
ACTGGCCAAAAGCAATACATGCCTAATAGTTCTCGTCACAACGCGCCATGGTTCGAATCTTTGACAGACGAAAGT
GGCTGGGCATGGTTCATACCTTTACATAATGGTACGGTTTCGGTCGGAATCGTAATGGATAGTTCTATCAGTGCG
CAGAAGAAAGCGGAAGGGAGGAAGGCAACATCCGACGGCAATTACACACTGAGAGATCATTACCTTGACCAGATC
CAGTTGGTGCCCGGGTTGAAAGCCTTTCTGGAAGAAGCAACGCTCAAAGAGGATGGCGAGCATTATGTTATTCGG
AGCGCCGCAGACTATAGCTATGCGGCGGACAAGTACGCTGGGGACCATTATAGAATTATCGGCGACGCCTCTGCT
TTCATCGATCCATTTTTTTCCAGTGGTGTTCATCTCGCCCTCCTTGGAGGCCTAACCGCAGCAGCATCAATCGCA
GCATCAATCAAGAAACAGTGCGCGGAGGAAGTGGCTTGGAAATTCCACGATGTTAAAGTTGCGACGGCGTACACG
AGATTTTTGCTGGTCGTTATGAGTGCGTACAAACAGATTCGAAACCAGTCAGTGGCAGTACTGTCAGATGTCGAC
GAAGATAATTTTGATCGGGTTTTCGACATCTTCCGGCCTGTCATCCAGGGGAACTCAGACGTCGGGAAAAATTTA
TCAGAAAATGAGCTTGAAAGGACAATCGACTTCTGCAAAGATATTTTTGCGCCGACAGATCCAGAGATGATTGAG
GCAGTTGGTGCTCGCCTACGGCCGGAGCTACTTGCAGCAAACAGCCCCATCTTAACGAATGAGGAGATCAACATA
GAGTCTCAAGGTGACGATGAAGCTAGAATAGTGTTACATCGCTTGAATGCCCGGAAGCCAGTCAACCAGATGTAT
CAGGGGCCAGATAATCTCCAGGTGGGCGACGTAGGCGGGTACGTAGCACATATACAAGTTGGTGCACTCGGCCTT
GTCGAAGTGGCATCGACGTGA
Transcript >AgabiH97|004740
ATGCCAAACGCACAACTACCATCCCGCACCACTGTCCTTGTTATTGGCGGTGGACCTGCTGGTGCTTACGCGGCT
TCAGCTTTGGCCCGAGAGAACATCGACACCATCGTCATTGAGGCAGCCAAATTTCCTCGGTATCATATTGGCGAG
AGTATGCTTCCGTCCTTGAATTCGTTTATGCGATTTATTGGTGCTGAAGAAAAACTCCGAGACCATGGATTCACG
ACGAAACTTGGAGCAGCTGTAAAGTTTAACCAACATAAGAAAGAAGGCTATACTGATTTTACACGAGGCGATGTC
CGAAATGCGAGTTGTAACGTTATTCGCTCAGAATTCGACAACATGCTTCTACGCCACGCCGAGGAGTCGGGGGCT
CGAGTTTTTGAGGAAACAAAGATCACTGATATCGAATTCGAAACCAACGGAGCAGAGATGCGTCCTACTTCAGCA
ACCTATACACGGAAGAACGGCGAGGTTGGTGTAGTCCATTTTGATTACCTAGTGGATGCCTCTGGTAGGAATGGG
ATAGTCTCCACCAAGTACCTGAAAAACCGCAAAATGAATCAGAGCTTGCACAACCTCGCATGTTGGGGATATTGG
ACTGGCCAAAAGCAATACATGCCTAATAGTTCTCGTCACAACGCGCCATGGTTCGAATCTTTGACAGACGAAAGT
GGCTGGGCATGGTTCATACCTTTACATAATGGTACGGTTTCGGTCGGAATCGTAATGGATAGTTCTATCAGTGCG
CAGAAGAAAGCGGAAGGGAGGAAGGCAACATCCGACGGCAATTACACACTGAGAGATCATTACCTTGACCAGATC
CAGTTGGTGCCCGGGTTGAAAGCCTTTCTGGAAGAAGCAACGCTCAAAGAGGATGGCGAGCATTATGTTATTCGG
AGCGCCGCAGACTATAGCTATGCGGCGGACAAGTACGCTGGGGACCATTATAGAATTATCGGCGACGCCTCTGCT
TTCATCGATCCATTTTTTTCCAGTGGTGTTCATCTCGCCCTCCTTGGAGGCCTAACCGCAGCAGCATCAATCGCA
GCATCAATCAAGAAACAGTGCGCGGAGGAAGTGGCTTGGAAATTCCACGATGTTAAAGTTGCGACGGCGTACACG
AGATTTTTGCTGGTCGTTATGAGTGCGTACAAACAGATTCGAAACCAGTCAGTGGCAGTACTGTCAGATGTCGAC
GAAGATAATTTTGATCGGGTTTTCGACATCTTCCGGCCTGTCATCCAGGGGAACTCAGACGTCGGGAAAAATTTA
TCAGAAAATGAGCTTGAAAGGACAATCGACTTCTGCAAAGATATTTTTGCGCCGACAGATCCAGAGATGATTGAG
GCAGTTGGTGCTCGCCTACGGCCGGAGCTACTTGCAGCAAACAGCCCCATCTTAACGAATGAGGAGATCAACATA
GAGTCTCAAGGTGACGATGAAGCTAGAATAGTGTTACATCGCTTGAATGCCCGGAAGCCAGTCAACCAGATGTAT
CAGGGGCCAGATAATCTCCAGGTGGGCGACGTAGGCGGGTACGTAGCACATATACAAGTTGGTGCACTCGGCCTT
GTCGAAGTGGCATCGACGTGA
Gene >AgabiH97|004740
ATGCCAAACGCACAACTAGTAAGCCCTGTCGTTTTGTGTGGTTACAGGCGACCGATAGATGATGACATTTCGTTA
GCCATCCCGCACCACTGTCCTTGTTATTGGCGGTGGACCTGCTGGTGCTTACGCGGCTTCAGCTTTGGCCCGAGA
GAACATCGACACCATCGTCATTGAGGCAGCCAAATTTCCTCGGTAAGATATTCTCCTCTCTACTAGCCCCTATGT
TCCTGAAGCCGCGGAGGTATCATATTGGCGAGAGTATGCTTCCGTCCTTGAATTCGTTTATGCGATTTATTGGTG
CTGAAGAAAAACTCCGAGACCATGGATTCACGACGAAAGTATGTCCGATACCCCTCGATCAATCACCAACAAACT
TACACTGCCATAGCTTGGAGCAGCTGTAAAGTTTAACCAACATAAGAAAGAAGGCTGTAAGTCATTGATAGTTAC
GAAAAGCAGCACGACCTGAAACAAACCGCTTAGATACTGATTTTACACGAGGCGATGTCCGAAATGCGAGTTGTA
ACGTTGTGAGTGCTTCGGCCAAATCTTTGACCCATTCTTGTACTTGAGCTCGTCCCTAGATTCGCTCAGAATTCG
ACAACATGCTTCTACGCCACGCCGAGGAGTCGGGGGCTCGAGTTTTTGAGGAAACAAAGATCACTGATATCGAAT
TCGAAACCAACGGAGCAGAGATGCGTCCTACTTCAGCAACCTATACACGGAAGAACGGCGAGGTTGGTGTAGTCC
ATTTTGATTACCTAGTGGATGCCTCTGGTAGGAATGGGATAGTCTCCACCAAGGTATGTCATTTACACGGAAACG
ACTCAAAGATATGATTAGACGCGTCGATGTAGTACCTGAAAAACCGCAAAATGAATCAGAGCTTGCACAACCTCG
CATGTTGGGGATATTGGACTGGCCAAAAGCAATACATGCCTAATAGTTCTCGTCACAACGCGCCATGGTTCGAAT
CTTTGACAGGTGAGACTTCTCCTTGATCCGGATCTAATACATTGAGCGTTCAAATAAAAAATGGCAGACGAAAGT
GGCTGGGCATGGTTCATACCTTTACATAATGGTACGGTGAGTACCCTTCAACACTACACTAGAAGAGCATAGTCT
GATAGAAGTACCGTAAGGTTTCGGTCGGAATCGTAATGGATAGTTCTATCAGTGCGCAGAAGAAAGCGGAAGGGA
GGAAGGCAACATCCGACGGCAATTACACACTGAGAGATCATTACCTTGACCAGATCCAGTTGGTGCCCGGGTTGA
AAGCCTTTCTGGAAGAAGCAACGCTCAAAGAGGATGGCGAGCATTATGTTATTCGGAGCGCCGCAGACTATAGCT
ATGCGGCGGACAAGTACGCTGGGGACCATTATAGAATTATCGGCGACGCCTCTGGTAGGTTCCCTAAATCCAATG
CGGCAAGACAAAAAGGCCTGACTGCGGAGCAGCTTTCATCGATCCATTTTTTTCCAGTGGTGTTCATCTCGCCCT
CCTTGGAGGCCTAACCGCAGCAGCATCAATCGCAGCATCAATCAAGAAACAGTGCGCGGAGGAAGTGGCTTGGAA
ATTCCACGATGTTAAAGTTGCGACGGCGTACACGAGGTAATTTCTTGATGAACAATTGTGTCAAAGCAGCCTTCG
ATGACATGGTTGTCTAGATTTTTGCTGGTCGTTATGAGTGCGTACAAACAGATTCGAAACCAGTCAGTGGCAGTA
CTGTCAGATGTCGACGAAGATAATTTTGATCGGGTTTTCGACATCTTCCGGCCTGGTAGGCACCCATTCCTATTC
AAAGGTTCCTTGAGAAGGCTGACCACTAGTAGTCATCCAGGGGAACTCAGACGTCGGGAAAAATTTATCAGAAAA
TGAGCTTGAAAGGACAATCGACTTCTGCAAAGGTAGATATTTGTATCGCCAGCTATGAGACCACTGCCTAAGATG
ATCATTAGATATTTTTGCGCCGACAGATCCAGAGATGATTGAGGCAGTTGGTGCTCGCCTACGGCCGGAGCTACT
TGCAGCAAACAGCCCCATCTTAACGAATGAGGAGATCAACATAGAGTCTCAAGGTGACGATGAAGCTAGAATAGT
GTTACATCGCTTGAATGCCCGGAAGCCAGTCAACCAGATGTATCAGGGGCCAGATAATCTCCAGGTGGGCGACGT
AGGCGGGTACGTAGCACATATACAAGTTGGTGCACTCGGCCTTGTCGAAGTGGCATCGACGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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