Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|004520
Gene name
Locationscaffold_1:1108333..1109818
Strand+
Gene length (bp)1485
Transcript length (bp)1275
Coding sequence length (bp)1275
Protein length (aa) 425

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family 2.7E-18 7 286

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O74369|CSS1_SCHPO Inositol phosphosphingolipids phospholipase C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=css1 PE=1 SV=2 2 407 3.0E-75
sp|P40015|ISC1_YEAST Inositol phosphosphingolipids phospholipase C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISC1 PE=1 SV=1 3 407 1.0E-51
sp|O45870|NSMA_CAEEL Putative neutral sphingomyelinase OS=Caenorhabditis elegans GN=T27F6.6 PE=3 SV=2 4 400 4.0E-41
sp|Q9ET64|NSMA_RAT Sphingomyelin phosphodiesterase 2 OS=Rattus norvegicus GN=Smpd2 PE=1 SV=1 4 332 4.0E-38
sp|O60906|NSMA_HUMAN Sphingomyelin phosphodiesterase 2 OS=Homo sapiens GN=SMPD2 PE=1 SV=2 4 293 6.0E-37
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Swissprot ID Swissprot Description Start End E-value
sp|O74369|CSS1_SCHPO Inositol phosphosphingolipids phospholipase C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=css1 PE=1 SV=2 2 407 3.0E-75
sp|P40015|ISC1_YEAST Inositol phosphosphingolipids phospholipase C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISC1 PE=1 SV=1 3 407 1.0E-51
sp|O45870|NSMA_CAEEL Putative neutral sphingomyelinase OS=Caenorhabditis elegans GN=T27F6.6 PE=3 SV=2 4 400 4.0E-41
sp|Q9ET64|NSMA_RAT Sphingomyelin phosphodiesterase 2 OS=Rattus norvegicus GN=Smpd2 PE=1 SV=1 4 332 4.0E-38
sp|O60906|NSMA_HUMAN Sphingomyelin phosphodiesterase 2 OS=Homo sapiens GN=SMPD2 PE=1 SV=2 4 293 6.0E-37
sp|O70572|NSMA_MOUSE Sphingomyelin phosphodiesterase 2 OS=Mus musculus GN=Smpd2 PE=1 SV=1 4 324 1.0E-34
sp|Q9VZS6|NSMA_DROME Putative neutral sphingomyelinase OS=Drosophila melanogaster GN=CG12034 PE=2 SV=2 10 295 1.0E-27
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GO

GO Term Description Terminal node
GO:0003824 catalytic activity Yes
GO:0003674 molecular_function No

SignalP

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SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 20 0.45

Transmembrane Domains

Domain # Start End Length
1 342 361 19
2 371 393 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|004520
MPALRLLTLNCWGLKYVAKKRNQRLGAIIDYLVRSSHDIIALQEVWVYADYNKVRVALQHRLPHAKFFYSGALGA
GLAIFSRFPFIESALHPFSLNGEPLDVAAGDWFVGKAAASVVILHPELGKLHIFTTHLYAKGGEDGPEYKRAHRL
VNAWEFAKLARHAAESGHYVIGMGDFNSIPTTLPMAIIRDHAALEDAWTVTHPEGEDIVASSPLDAIAKYGITAD
SPVNTWSAGKSYLNSTFWGKRLDYILYRQPQGRHCPRLQASDCRVVLTENAPGYNFSCSDHFGLEATLNFELGSS
QNTLNGHADDPQSELSRNTITSIMDALTNCYRFSRQRSRKELYTFVLCVILLSAFAVGAAWLPHSWINPLFIVFT
IVLSWTATTMLYEGFLYGNWERNALLNVIEELDIYQKGLDIQASARNSS*
Coding >AgabiH97|004520
ATGCCTGCCCTCCGCCTGCTCACGCTCAACTGCTGGGGCCTCAAATATGTCGCAAAGAAGCGCAACCAGCGACTC
GGCGCAATCATCGACTATCTTGTCCGCTCCTCTCACGACATCATCGCTCTCCAGGAGGTTTGGGTCTACGCCGAC
TACAACAAAGTTCGGGTTGCACTGCAGCACCGCCTGCCTCATGCAAAGTTCTTCTACAGTGGCGCCCTGGGTGCG
GGTCTTGCCATATTCTCCCGTTTTCCATTCATCGAATCCGCACTCCATCCCTTTTCCCTGAACGGAGAACCCCTC
GATGTCGCTGCAGGCGACTGGTTCGTTGGCAAGGCTGCTGCGAGCGTCGTCATCCTCCATCCCGAACTTGGCAAA
CTTCACATCTTCACCACCCATCTCTATGCAAAGGGTGGCGAAGATGGTCCCGAGTACAAGAGGGCTCACAGGCTT
GTCAATGCTTGGGAATTCGCCAAGCTTGCACGCCACGCCGCAGAATCAGGTCACTATGTGATCGGGATGGGTGAC
TTTAACAGCATACCCACCACTTTACCTATGGCCATCATTCGCGATCATGCCGCCTTGGAAGACGCTTGGACAGTT
ACACATCCCGAGGGTGAAGACATCGTCGCTTCAAGTCCGCTGGACGCCATCGCCAAGTATGGCATCACCGCAGAC
TCACCCGTCAACACTTGGTCCGCGGGCAAATCATACCTCAACTCCACCTTTTGGGGAAAACGACTTGACTACATT
TTGTACCGCCAACCACAAGGCAGACACTGCCCTCGACTACAAGCTTCCGATTGCCGAGTCGTTCTCACCGAAAAC
GCCCCGGGATACAACTTTTCTTGTTCCGATCACTTTGGTTTAGAAGCAACCCTCAATTTCGAACTCGGCTCGAGT
CAAAATACCCTCAATGGACATGCCGACGATCCCCAATCAGAATTATCAAGAAACACGATTACCTCTATCATGGAC
GCACTCACAAACTGTTATCGCTTCTCTCGCCAGCGTTCTAGGAAGGAACTTTATACCTTCGTGTTGTGTGTCATT
CTGCTTAGTGCCTTTGCCGTGGGCGCTGCTTGGCTTCCACATTCATGGATAAACCCTCTCTTTATTGTGTTCACC
ATCGTCCTCTCGTGGACTGCTACTACGATGCTATATGAAGGTTTTCTATACGGTAATTGGGAACGTAATGCTCTA
CTAAATGTCATCGAGGAATTGGATATATACCAGAAGGGCCTGGATATACAAGCTAGCGCGAGGAACTCTTCATAG
Transcript >AgabiH97|004520
ATGCCTGCCCTCCGCCTGCTCACGCTCAACTGCTGGGGCCTCAAATATGTCGCAAAGAAGCGCAACCAGCGACTC
GGCGCAATCATCGACTATCTTGTCCGCTCCTCTCACGACATCATCGCTCTCCAGGAGGTTTGGGTCTACGCCGAC
TACAACAAAGTTCGGGTTGCACTGCAGCACCGCCTGCCTCATGCAAAGTTCTTCTACAGTGGCGCCCTGGGTGCG
GGTCTTGCCATATTCTCCCGTTTTCCATTCATCGAATCCGCACTCCATCCCTTTTCCCTGAACGGAGAACCCCTC
GATGTCGCTGCAGGCGACTGGTTCGTTGGCAAGGCTGCTGCGAGCGTCGTCATCCTCCATCCCGAACTTGGCAAA
CTTCACATCTTCACCACCCATCTCTATGCAAAGGGTGGCGAAGATGGTCCCGAGTACAAGAGGGCTCACAGGCTT
GTCAATGCTTGGGAATTCGCCAAGCTTGCACGCCACGCCGCAGAATCAGGTCACTATGTGATCGGGATGGGTGAC
TTTAACAGCATACCCACCACTTTACCTATGGCCATCATTCGCGATCATGCCGCCTTGGAAGACGCTTGGACAGTT
ACACATCCCGAGGGTGAAGACATCGTCGCTTCAAGTCCGCTGGACGCCATCGCCAAGTATGGCATCACCGCAGAC
TCACCCGTCAACACTTGGTCCGCGGGCAAATCATACCTCAACTCCACCTTTTGGGGAAAACGACTTGACTACATT
TTGTACCGCCAACCACAAGGCAGACACTGCCCTCGACTACAAGCTTCCGATTGCCGAGTCGTTCTCACCGAAAAC
GCCCCGGGATACAACTTTTCTTGTTCCGATCACTTTGGTTTAGAAGCAACCCTCAATTTCGAACTCGGCTCGAGT
CAAAATACCCTCAATGGACATGCCGACGATCCCCAATCAGAATTATCAAGAAACACGATTACCTCTATCATGGAC
GCACTCACAAACTGTTATCGCTTCTCTCGCCAGCGTTCTAGGAAGGAACTTTATACCTTCGTGTTGTGTGTCATT
CTGCTTAGTGCCTTTGCCGTGGGCGCTGCTTGGCTTCCACATTCATGGATAAACCCTCTCTTTATTGTGTTCACC
ATCGTCCTCTCGTGGACTGCTACTACGATGCTATATGAAGGTTTTCTATACGGTAATTGGGAACGTAATGCTCTA
CTAAATGTCATCGAGGAATTGGATATATACCAGAAGGGCCTGGATATACAAGCTAGCGCGAGGAACTCTTCATAG
Gene >AgabiH97|004520
ATGCCTGCCCTCCGCCTGCTCACGCTCAACTGCTGGTACATCGTCCGGGTCACTTTTCTGCTGTCCACCTACTGA
ACTCTCTACAGGGGCCTCAAATATGTCGCAAAGAAGCGCAACCAGCGACTCGGCGCAATCATCGACTATCTTGTC
CGCTCCTCTCACGACATCATCGCTCTCCAGGAGGTTTGGGTCTACGCCGACTACAACAAAGTTCGGGTTGCACTG
CAGCACCGCCTGCCTCATGCAAAGTTCTTCTACAGGCAAGCTCCCGGCTTCGATCTTGCTTTTCCAAAAGCTTAC
TTTCTACTTCTAGTGGCGCCCTGGGTGCGGGTCTTGCCATATTCTCCCGTTTTCCATTCATCGAATCCGCACTCC
ATCCCTTTTCCCTGAACGGAGAACCCCTCGATGTCGCTGCAGGCGACTGGTTCGTTGGCAAGGCTGCTGCGAGCG
TCGTCATCCTCCATCCCGAACTTGGCAAACTTCACATCTTCACCACCCATGTAGCCCATCTTTTCATTCTACGTC
TTGGCCATGTTCTCAATTCAATTTCAGCTCTATGCAAAGGGTGGCGAAGATGGTCCCGAGTACAAGAGGGCTCAC
AGGCTTGTCAATGCTTGGGAATTCGCCAAGCTTGCACGCCACGCCGCAGAATCAGGTCACTATGTGATCGGGGTA
TGTCTCCTCCACCTCCCAGACACCAATCCTTGTTTAATCTTTTGGCACCAGATGGGTGACTTTAACAGCATACCC
ACCACTTTACCTATGGCCATCATTCGCGATCATGCCGCCTTGGAAGACGCTTGGACAGTTACACATCCCGAGGGT
GAAGACATCGTCGCTTCAAGTCCGCTGGACGCCATCGCCAAGTATGGCATCACCGCAGACTCACCCGTCAACACT
TGGTCCGCGGGCAAATCATACCTCAACTCCACCTTTTGGGGAAAACGACTTGACTACATTTTGTACCGCCAACCA
CAAGGCAGACACTGCCCTCGACTACAAGCTTCCGATTGCCGAGTCGTTCTCACCGAAAACGCCCCGGGATACAAC
TTTTCTTGTTCCGATCACTTTGGTTTAGAAGCAACCCTCAATTTCGAACTCGGCTCGAGTCAAAATACCCTCAAT
GGACATGCCGACGATCCCCAATCAGAATTATCAAGAAACACGATTACCTCTATCATGGACGCACTCACAAACTGT
TATCGCTTCTCTCGCCAGCGTTCTAGGAAGGAACTTTATACCTTCGTGTTGTGTGTCATTCTGCTTAGTGCCTTT
GCCGTGGGCGCTGCTTGGCTTCCACATTCATGGATAAACCCTCTCTTTATTGTGTTCACCATCGTCCTCTCGTGG
ACTGCTACTACGATGCTATATGAAGGTTTTCTATACGGTAATTGGGAACGTAATGCTCTACTAAATGTCATCGAG
GAATTGGATATATACCAGAAGGGCCTGGATATACAAGCTAGCGCGAGGAACTCTTCATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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