Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	AgabiH97|004290
Gene name
Location	scaffold_1:1056056..1057718
Strand	-
Gene length (bp)	1662
Transcript length (bp)	1260
Coding sequence length (bp)	1260
Protein length (aa)	420

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF13639	zf-RING_2	Ring finger domain	1.6E-10	236	284
PF12678	zf-rbx1	RING-H2 zinc finger domain	8.6E-10	236	284
PF13923	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	2.2E-08	237	283
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	3.5E-07	237	283
PF12861	zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	3.4E-05	237	287

Swissprot hits

GO

GO Term	Description	Terminal node
GO:0061630	ubiquitin protein ligase activity	Yes
GO:0008270	zinc ion binding	Yes
GO:0031145	anaphase-promoting complex-dependent catabolic process	Yes
GO:0005680	anaphase-promoting complex	Yes
GO:0097602	cullin family protein binding	Yes
GO:0046872	metal ion binding	Yes
GO:1901564	organonitrogen compound metabolic process	No
GO:0008152	metabolic process	No
GO:0019538	protein metabolic process	No
GO:0031461	cullin-RING ubiquitin ligase complex	No
GO:0009056	catabolic process	No
GO:0008150	biological_process	No
GO:0071704	organic substance metabolic process	No
GO:0006511	ubiquitin-dependent protein catabolic process	No
GO:1901565	organonitrogen compound catabolic process	No
GO:0043169	cation binding	No
GO:0044248	cellular catabolic process	No
GO:0061659	ubiquitin-like protein ligase activity	No
GO:0046914	transition metal ion binding	No
GO:0005575	cellular_component	No
GO:0140535	intracellular protein-containing complex	No
GO:0043167	ion binding	No
GO:0005488	binding	No
GO:0051603	proteolysis involved in protein catabolic process	No
GO:1990234	transferase complex	No
GO:0019941	modification-dependent protein catabolic process	No
GO:0030163	protein catabolic process	No
GO:0043632	modification-dependent macromolecule catabolic process	No
GO:0032991	protein-containing complex	No
GO:0140096	catalytic activity, acting on a protein	No
GO:0044260	cellular macromolecule metabolic process	No
GO:0000151	ubiquitin ligase complex	No
GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	No
GO:0019787	ubiquitin-like protein transferase activity	No
GO:0044265	cellular macromolecule catabolic process	No
GO:0003824	catalytic activity	No
GO:0009057	macromolecule catabolic process	No
GO:0044237	cellular metabolic process	No
GO:0009987	cellular process	No
GO:0044238	primary metabolic process	No
GO:0006508	proteolysis	No
GO:0004842	ubiquitin-protein transferase activity	No
GO:0000152	nuclear ubiquitin ligase complex	No
GO:0003674	molecular_function	No
GO:0016740	transferase activity	No
GO:0010498	proteasomal protein catabolic process	No
GO:0006807	nitrogen compound metabolic process	No
GO:1902494	catalytic complex	No
GO:0005515	protein binding	No
GO:0043170	macromolecule metabolic process	No
GO:1901575	organic substance catabolic process	No
GO:0140513	nuclear protein-containing complex	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 16	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|004290 MSARSPMWFCHQCHAEMRPLMAPDPVCASCRSSFVEKIEDPQDDPRQFAAPAPAPPPGDHDAAGFDNFLIALQTL LNRGMDPADQPPPRQQPPSRMTFQFGNVAGHPRQTTVTFGTSPSPPGAVPSMSEFMRSAPSPFPQEDTHATPQIN GHLFSQYLMSLLGQTNHPMMPLFMGGGMPESGRMGDYVFSQDALDQIITQIMDSTNTNRPVPATEEIVERLPQEV LMADSPLLTKDCAVCKDQFELGTEDPEQQIVITLPCKHPFHKMCILPWLKSSGTCPVCRYALVPQPGQPTSPNPN DTTASSSSPRPTANDPRPRSQSPPSSPRQSPRSTTSGSVPARSNFASLFGMGGSPRHFHRPSSSFPQPPTARPSS PNSRPAERTSSSSRSGSRNDQPRNSGDRRPHFPGQWTDDMSDLD*
Coding	>AgabiH97|004290 ATGTCTGCCCGCTCGCCAATGTGGTTCTGCCACCAATGCCACGCTGAAATGCGCCCACTCATGGCCCCAGATCCC GTCTGCGCTTCCTGTCGCAGCTCCTTTGTCGAAAAGATCGAAGATCCTCAAGACGATCCCCGCCAATTTGCTGCA CCCGCACCCGCCCCGCCTCCCGGTGACCACGATGCCGCTGGTTTCGACAACTTTCTAATTGCTCTGCAGACCCTT CTCAACCGTGGAATGGACCCCGCTGATCAACCACCCCCTCGACAACAACCTCCCTCCCGTATGACATTCCAGTTT GGCAATGTAGCCGGTCACCCTCGACAGACAACAGTCACGTTTGGCACTTCCCCGTCACCCCCAGGTGCCGTACCA TCCATGTCAGAATTCATGCGTAGTGCTCCCAGCCCTTTCCCCCAAGAGGATACCCACGCCACTCCACAGATCAAC GGTCATCTCTTTTCTCAGTACCTCATGTCTCTCCTTGGACAAACGAACCATCCTATGATGCCTCTCTTCATGGGC GGCGGTATGCCAGAGAGTGGTAGAATGGGTGACTATGTCTTCAGTCAAGATGCATTAGATCAAATAATTACGCAA ATCATGGATTCCACTAATACCAACAGGCCCGTTCCCGCAACCGAAGAGATCGTTGAGCGCCTCCCTCAAGAAGTC CTCATGGCTGACAGCCCTCTCTTGACCAAGGATTGTGCGGTGTGTAAAGATCAGTTCGAGTTGGGGACAGAAGAC CCAGAGCAACAGATCGTGATTACTCTCCCATGCAAGCATCCGTTCCACAAGATGTGTATCCTTCCTTGGTTAAAG TCTTCCGGCACGTGTCCTGTATGTCGATACGCGCTTGTCCCACAGCCTGGGCAGCCTACATCGCCAAACCCCAAC GACACTACCGCTTCCTCGTCCTCCCCAAGGCCCACCGCCAATGACCCACGCCCAAGATCACAATCACCCCCCAGC AGTCCACGCCAGTCGCCAAGGTCAACAACATCAGGTTCAGTCCCTGCCCGAAGCAATTTTGCTTCGTTGTTTGGT ATGGGAGGCAGTCCCAGACACTTCCATCGTCCCTCGAGTTCCTTTCCGCAACCACCCACAGCACGACCGTCGTCA CCCAACTCCCGACCGGCTGAGCGGACGTCCTCGTCCTCTAGGTCTGGCTCACGCAATGACCAACCACGGAATAGT GGGGATAGGCGCCCACATTTTCCAGGCCAGTGGACCGATGACATGTCGGATTTAGATTGA
Transcript	>AgabiH97|004290 ATGTCTGCCCGCTCGCCAATGTGGTTCTGCCACCAATGCCACGCTGAAATGCGCCCACTCATGGCCCCAGATCCC GTCTGCGCTTCCTGTCGCAGCTCCTTTGTCGAAAAGATCGAAGATCCTCAAGACGATCCCCGCCAATTTGCTGCA CCCGCACCCGCCCCGCCTCCCGGTGACCACGATGCCGCTGGTTTCGACAACTTTCTAATTGCTCTGCAGACCCTT CTCAACCGTGGAATGGACCCCGCTGATCAACCACCCCCTCGACAACAACCTCCCTCCCGTATGACATTCCAGTTT GGCAATGTAGCCGGTCACCCTCGACAGACAACAGTCACGTTTGGCACTTCCCCGTCACCCCCAGGTGCCGTACCA TCCATGTCAGAATTCATGCGTAGTGCTCCCAGCCCTTTCCCCCAAGAGGATACCCACGCCACTCCACAGATCAAC GGTCATCTCTTTTCTCAGTACCTCATGTCTCTCCTTGGACAAACGAACCATCCTATGATGCCTCTCTTCATGGGC GGCGGTATGCCAGAGAGTGGTAGAATGGGTGACTATGTCTTCAGTCAAGATGCATTAGATCAAATAATTACGCAA ATCATGGATTCCACTAATACCAACAGGCCCGTTCCCGCAACCGAAGAGATCGTTGAGCGCCTCCCTCAAGAAGTC CTCATGGCTGACAGCCCTCTCTTGACCAAGGATTGTGCGGTGTGTAAAGATCAGTTCGAGTTGGGGACAGAAGAC CCAGAGCAACAGATCGTGATTACTCTCCCATGCAAGCATCCGTTCCACAAGATGTGTATCCTTCCTTGGTTAAAG TCTTCCGGCACGTGTCCTGTATGTCGATACGCGCTTGTCCCACAGCCTGGGCAGCCTACATCGCCAAACCCCAAC GACACTACCGCTTCCTCGTCCTCCCCAAGGCCCACCGCCAATGACCCACGCCCAAGATCACAATCACCCCCCAGC AGTCCACGCCAGTCGCCAAGGTCAACAACATCAGGTTCAGTCCCTGCCCGAAGCAATTTTGCTTCGTTGTTTGGT ATGGGAGGCAGTCCCAGACACTTCCATCGTCCCTCGAGTTCCTTTCCGCAACCACCCACAGCACGACCGTCGTCA CCCAACTCCCGACCGGCTGAGCGGACGTCCTCGTCCTCTAGGTCTGGCTCACGCAATGACCAACCACGGAATAGT GGGGATAGGCGCCCACATTTTCCAGGCCAGTGGACCGATGACATGTCGGATTTAGATTGA
Gene	>AgabiH97|004290 ATGTCTGCCCGCTCGCCAATGTGGTTCTGCCACCAAGTGCGTCGACTCTCTCGTCCCCGTGACCCCCAGCTCATT CTCCCCCCTCAGTGCCACGCTGAAATGCGCCCACTCATGGTCTCTCTCACTCGCTGATCCTCCCCTGCACTGACT AATCAACCCTGCAGGCCCCAGATCCCGTCTGCGCTTCCTGTCGCAGCTCCTTTGTCGAAAAGGTGGCTGCTTTCC TGCTCTCTCACTCTCGCTTGCCTCACCACCCCACCAGATCGAAGATCCTCAAGACGATCCCCGCCAATTTGCTGC ACCCGCACCCGCCCCGCCTCCCGGTGACCACGATGCCGCTGGTTTCGACAACTTTCTAAGTGTGTTCATTCCAAG CACTTTTGTCTCTGCTACATCTCTCTTTCAGTTGCTCTGCAGACCCTTCTCAACCGTGGAATGGACCCCGCTGAT CAACCACCCCCTCGACAACAAGTGAATCTCTGCTGTTCTATCTCGTTTCTCGACACTCAGACCTTCCTTTCTAGC CTCCCTCCCGTATGACATTCCAGTTTGGCAATGTAGCCGGTCACCCTCGACAGACAACAGTCACGTTTGGCACTT CCCCGTCACCCCCAGGTGCCGTACCATCCATGTCAGAGTAGGTGTCTTTTCCCATATCATCCTCCGGCTCCACCG ACCTTGTGCCCCAGATTCATGCGTAGTGCTCCCAGCCCTTTCCCCCAAGAGGATACCCACGCCACTCCACAGATC AACGGTCATCTCTTTTCTCAGTACCTCATGTCTCTCCTTGGACAAACGAACCATCCTATGATGCCTCTCTTCATG GGCGGCGGTATGCCAGAGAGTGGTAGAATGGGTGACTATGTCTTCAGTCAAGATGGTATGTATGCCCTCTCTTGA CTTTTCCATCTGTCCTCATGTCCTGCTCAGCATTAGATCAAATAATTACGCAAATCATGGATTCCACTAATACCA ACAGGCCCGTTCCCGCAACCGAAGAGATCGTTGAGCGCCTCCCTCAAGAAGTCCTCATGGCTGACAGTACGTTCA TCTCTGCTCTCTTTCTCACACGCACCCTCATTCCTTCTAGGCCCTCTCTTGACCAAGGATTGTGCGGTGTGTAAA GATCAGTTCGAGTTGGGGACAGAAGACCCAGAGCAACAGATCGTGATTACTCTCCCATGCAAGCATCCGTTCCAC AAGATGTGTATCCTTCCTTGGTTAAAGTCTTCCGGCACGTGTCCTGTATGTCGATACGCGCTTGTCCCACAGCCT GGGCAGCCTACATCGCCAAACCCCAACGACACTACCGCTTCCTCGTCCTCCCCAAGGCCCACCGCCAATGACCCA CGCCCAAGATCACAATCACCCCCCAGCAGTCCACGCCAGTCGCCAAGGTCAACAACATCAGGTTCAGTCCCTGCC CGAAGCAATTTTGCTTCGTTGTTTGGTATGGGAGGCAGTCCCAGACACTTCCATCGTCCCTCGAGTTCCTTTCCG CAACCACCCACAGCACGACCGTCGTCACCCAACTCCCGACCGGCTGAGCGGACGTCCTCGTCCTCTAGGTCTGGC TCACGCAATGACCAACCACGGAATAGTGGGGATAGGCGCCCACATTTTCCAGGCCAGTGGACCGATGACATGTCG GATTTAGATTGA