Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|004100
Gene name
Locationscaffold_1:1013611..1015177
Strand+
Gene length (bp)1566
Transcript length (bp)915
Coding sequence length (bp)915
Protein length (aa) 305

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF20152 DUF6534 Family of unknown function (DUF6534) 2.3E-15 163 247

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cell membrane Transmembrane domain 0.0578 0.1103 0.1374 0.6649 0.0902 0.0009 0.0945 0.3587 0.3872 0.0015

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 10 32 22
2 45 67 22
3 82 104 22
4 116 138 22
5 158 177 19
6 203 225 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup19
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|004100
Agaricus bisporus var bisporus H39 AgabiH39|406100
Agaricus bisporus var bisporus H39 AgabiH39|386300
Agaricus bisporus var bisporus H39 AgabiH39|386200
Agaricus bisporus var bisporus H39 AgabiH39|102060
Agaricus bisporus var bisporus H39 AgabiH39|095970
Agaricus bisporus var bisporus H39 AgabiH39|103490
Agaricus bisporus var bisporus H39 AgabiH39|095720
Agaricus bisporus var bisporus H39 AgabiH39|022930
Agaricus bisporus var bisporus H39 AgabiH39|020260
Agaricus bisporus var bisporus H39 AgabiH39|020250
Agaricus bisporus var bisporus H39 AgabiH39|095960
Agaricus bisporus var bisporus H97 AgabiH97|096260
Agaricus bisporus var bisporus H97 AgabiH97|103490
Agaricus bisporus var bisporus H97 AgabiH97|103480
Agaricus bisporus var bisporus H97 AgabiH97|103470
Agaricus bisporus var bisporus H97 AgabiH97|102060
Agaricus bisporus var bisporus H97 AgabiH97|096250
Agaricus bisporus var bisporus H97 AgabiH97|020260
Agaricus bisporus var bisporus H97 AgabiH97|095960
Agaricus bisporus var bisporus H97 AgabiH97|095720
Agaricus bisporus var bisporus H97 AgabiH97|022930
Agaricus bisporus var bisporus H97 AgabiH97|020250
Agaricus bisporus var bisporus H97 AgabiH97|004100 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|095970
Rhodonia placenta FPRL280 RhoplFPRL280|25_45
Rhodonia placenta FPRL280 RhoplFPRL280|168_9
Rhodonia placenta FPRL280 RhoplFPRL280|227_13
Rhodonia placenta FPRL280 RhoplFPRL280|435_5

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|004100
MGDFDLIVGPLLIGLFFNTYLYGLVTYQFLVYKTTKFNDPTWIKTVVALLFVCDTLHSGVAVYAGWEMCVTNFNH
PELLIFVGWTIPFTACATAVAALLTQGFLAHRVLLLTKSKVITVIILVLSVVGFVFGMYAGVRCGIIDDSTKFAP
LKPYVGCWLGFQTAADISITAVLSYSLSRSRTGFRKTDTLINRLIRGAIQTGLFASIFALADLFSFTLAGTTTLY
AMFAYPIGRIYTNTLLDTLNARIELKRGTAGTIDAESGNTYSLQNHSRTLAPDASTHSIQVQKETVTDGASLDAK
YPIQ*
Coding >AgabiH97|004100
ATGGGTGATTTCGATCTAATTGTTGGCCCTTTGCTCATCGGCCTCTTTTTCAACACATATCTCTATGGTTTGGTC
ACATACCAATTCTTGGTTTATAAGACGACCAAATTCAATGATCCAACATGGATTAAGACCGTAGTGGCTCTACTC
TTTGTGTGCGATACGCTGCACAGCGGTGTTGCTGTCTATGCCGGATGGGAGATGTGTGTTACCAATTTCAACCAC
CCCGAATTACTCATATTCGTTGGATGGACTATTCCGTTTACTGCCTGTGCCACAGCCGTGGCGGCGTTGCTTACA
CAAGGATTCCTCGCTCACCGGGTACTGCTTTTGACAAAGAGCAAGGTGATCACAGTAATCATCCTTGTTCTCAGC
GTCGTAGGCTTTGTTTTCGGCATGTACGCTGGTGTTCGCTGTGGAATTATCGATGATTCCACTAAATTTGCACCT
CTGAAGCCGTATGTCGGTTGCTGGCTTGGATTCCAGACTGCCGCCGATATCTCAATCACTGCTGTCTTGAGTTAC
TCGTTGTCTCGATCCCGCACTGGTTTCCGCAAGACTGACACTCTCATCAACCGTCTTATCCGAGGAGCAATTCAG
ACGGGTCTCTTCGCTTCAATCTTTGCCTTGGCAGACTTGTTCAGTTTCACTTTGGCTGGGACTACTACGCTGTAT
GCCATGTTTGCTTACCCTATCGGTCGCATCTACACCAACACTTTGTTGGATACTTTGAATGCTCGTATCGAGCTC
AAGAGGGGAACTGCAGGCACAATTGATGCTGAGAGTGGCAATACGTACAGTCTGCAGAACCACAGCCGTACCCTC
GCTCCAGATGCGTCTACCCATTCGATCCAGGTTCAGAAGGAAACTGTTACGGATGGCGCCAGTCTTGATGCCAAA
TACCCTATCCAGTGA
Transcript >AgabiH97|004100
ATGGGTGATTTCGATCTAATTGTTGGCCCTTTGCTCATCGGCCTCTTTTTCAACACATATCTCTATGGTTTGGTC
ACATACCAATTCTTGGTTTATAAGACGACCAAATTCAATGATCCAACATGGATTAAGACCGTAGTGGCTCTACTC
TTTGTGTGCGATACGCTGCACAGCGGTGTTGCTGTCTATGCCGGATGGGAGATGTGTGTTACCAATTTCAACCAC
CCCGAATTACTCATATTCGTTGGATGGACTATTCCGTTTACTGCCTGTGCCACAGCCGTGGCGGCGTTGCTTACA
CAAGGATTCCTCGCTCACCGGGTACTGCTTTTGACAAAGAGCAAGGTGATCACAGTAATCATCCTTGTTCTCAGC
GTCGTAGGCTTTGTTTTCGGCATGTACGCTGGTGTTCGCTGTGGAATTATCGATGATTCCACTAAATTTGCACCT
CTGAAGCCGTATGTCGGTTGCTGGCTTGGATTCCAGACTGCCGCCGATATCTCAATCACTGCTGTCTTGAGTTAC
TCGTTGTCTCGATCCCGCACTGGTTTCCGCAAGACTGACACTCTCATCAACCGTCTTATCCGAGGAGCAATTCAG
ACGGGTCTCTTCGCTTCAATCTTTGCCTTGGCAGACTTGTTCAGTTTCACTTTGGCTGGGACTACTACGCTGTAT
GCCATGTTTGCTTACCCTATCGGTCGCATCTACACCAACACTTTGTTGGATACTTTGAATGCTCGTATCGAGCTC
AAGAGGGGAACTGCAGGCACAATTGATGCTGAGAGTGGCAATACGTACAGTCTGCAGAACCACAGCCGTACCCTC
GCTCCAGATGCGTCTACCCATTCGATCCAGGTTCAGAAGGAAACTGTTACGGATGGCGCCAGTCTTGATGCCAAA
TACCCTATCCAGTGA
Gene >AgabiH97|004100
ATGGGTGATTTCGATCTAATTGTTGGTAAGAGGGACTACTACAACTATTAATTCTTGGCTGATCAATTAATTTCA
AGGCCCTTTGCTCATCGGCCTCTTTTGTGAGTATCTTTCGCTCAAATTAAATCGGCTGTTCTCTGATCTATGTCA
GTCAACACATATCTCTATGGTTTGGTCACATACCAATTCTTGGTTTATAAGACGACCAGTATGTTGCTTATTCCG
CTTACGCTTTCATCACCGTCTCACTGACGTGGCTTAGAATTCAATGATCCAACATGGATTAAGTATGCATTCGCG
ATTAGATCAGTCCTTTTACAACTATTAAACAGGTTTTATTTAGGACCGTAGTGGCTCTACTCTTTGTGTGCGATA
CGCTGCACAGCGGTGTGTAAGTGTTTGTCGCACTCTTCTGTGCTGTTAAAAGATTCTAATTGTTAATAGTGCTGT
CTATGCCGGATGGGAGATGTGGTAAGTGGCGTGGCAAATTTTTTTTTTTTTGCGCATGTATTTAATTGCGCGTGG
CGTCAGTGTTACCAATTTCAACCACCCCGAATTACTCATATGTGAGGAATATGTGGTCTCTTTCTTTGATAAAAG
CTAATATTTGTATCAGTCGTTGGATGGACTATTCCGTTTACTGCCTGTGCCACAGCCGTGGCGGCGTTGCTTACA
CAAGGATTCCTCGCTCACCGGTAAGAACCTTCGGAATAGTTGATTGATCTCAGGAGAAAGCTCATCACGAGCACT
ACAGGGTACTGCTTTTGACAAAGAGCAAGGTGATCACAGTAATCATCCTTGTTCTCAGCGTCGTAGGCTTTGTTT
TCGGCATGTACGCTGGTGTTCGCTGTGGAATTATCGATGAGTGCGTTCTAATCCTACTGAAAAAAATTGACGGCT
CGTGACATCTGGATTATAGTTCCACTAAATTTGCACCTCTGAAGCCGTATGTCGGTTGCTGGCTTGGATTCCAGA
CTGCCGCCGATATCTCAATCACTGGTATGTATTTGATCCTAGGCGTCGGCAATATCGTTGAAATGTGTCGCAGCT
GTCTTGAGTTACTCGTTGTCTCGATCCCGCACTGGTTTCCGCAAGACTGACACTCTCATCAACCGTCTTATCCGA
GGAGCAATTCAGACGGGTCTCTTCGCTTCAATCTTTGCCTTGGCAGACTTGTTCAGTTTCACTTTGGCTGGGACT
ACTACGCTGTATGCCATGTTTGCTTACCCTATCGGTCGCATCTACACCAACGTAAGCTCTCCCCTGATATATTGT
TACGTGGCTGATCTTTCCCTCTCCCCTCTTCTGAAGACTTTGTTGGATACTTTGAATGCTCGTATCGAGCTCAAG
AGGGGAACTGCAGGCACAATTGATGCTGAGAGTGGCGTACGTCATTTTCGTTGGTCCATGACAAGTTGAAACATT
TTAACGTTCCTTTAGAATACGTACAGTCTGCAGAACCACAGCCGTACCCTCGCTCCAGATGCGTCTACCCATTCG
ATCCAGGTTCAGAAGGAAACTGTTACGGATGGCGCCAGTCTTGATGCCAAATACCCTATCCAGTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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