© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|003400 |
| Gene name | |
| Location | scaffold_1:857527..858720 |
| Strand | + |
| Gene length (bp) | 1193 |
| Transcript length (bp) | 969 |
| Coding sequence length (bp) | 969 |
| Protein length (aa) | 323 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01073 | 3Beta_HSD | 3-beta hydroxysteroid dehydrogenase/isomerase family | 2.4E-10 | 5 | 202 |
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 7.4E-10 | 6 | 205 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q559Z0|NDUA9_DICDI | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Dictyostelium discoideum GN=ndufa9 PE=3 SV=1 | 61 | 240 | 8.0E-24 |
| sp|Q9SK66|NDUA9_ARATH | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Arabidopsis thaliana GN=At2g20360 PE=1 SV=2 | 6 | 301 | 2.0E-22 |
| sp|P34943|NDUA9_BOVIN | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Bos taurus GN=NDUFA9 PE=1 SV=1 | 69 | 285 | 1.0E-18 |
| sp|Q5BK63|NDUA9_RAT | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Rattus norvegicus GN=Ndufa9 PE=1 SV=2 | 64 | 290 | 2.0E-16 |
| sp|Q9DC69|NDUA9_MOUSE | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Mus musculus GN=Ndufa9 PE=1 SV=2 | 64 | 287 | 2.0E-14 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q559Z0|NDUA9_DICDI | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Dictyostelium discoideum GN=ndufa9 PE=3 SV=1 | 61 | 240 | 8.0E-24 |
| sp|Q9SK66|NDUA9_ARATH | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Arabidopsis thaliana GN=At2g20360 PE=1 SV=2 | 6 | 301 | 2.0E-22 |
| sp|P34943|NDUA9_BOVIN | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Bos taurus GN=NDUFA9 PE=1 SV=1 | 69 | 285 | 1.0E-18 |
| sp|Q5BK63|NDUA9_RAT | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Rattus norvegicus GN=Ndufa9 PE=1 SV=2 | 64 | 290 | 2.0E-16 |
| sp|Q9DC69|NDUA9_MOUSE | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Mus musculus GN=Ndufa9 PE=1 SV=2 | 64 | 287 | 2.0E-14 |
| sp|Q0MQB4|NDUA9_PANTR | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Pan troglodytes GN=NDUFA9 PE=2 SV=1 | 64 | 244 | 2.0E-14 |
| sp|Q0MQB3|NDUA9_GORGO | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFA9 PE=2 SV=2 | 64 | 244 | 3.0E-14 |
| sp|P0CB82|NDUA9_PONPY | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Pongo pygmaeus GN=NDUFA9 PE=2 SV=1 | 64 | 244 | 4.0E-14 |
| sp|P0CB81|NDUA9_PONAB | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Pongo abelii GN=NDUFA9 PE=2 SV=1 | 64 | 244 | 4.0E-14 |
| sp|Q16795|NDUA9_HUMAN | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Homo sapiens GN=NDUFA9 PE=1 SV=2 | 64 | 244 | 5.0E-14 |
| sp|P25284|NDUA9_NEUCR | NADH-ubiquinone oxidoreductase 40 kDa subunit, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo40 PE=1 SV=2 | 61 | 252 | 6.0E-14 |
| sp|P75822|YBJT_ECOLI | Uncharacterized protein YbjT OS=Escherichia coli (strain K12) GN=ybjT PE=4 SV=2 | 1 | 284 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Yes |
| GO:0003854 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity | Yes |
| GO:0006694 | steroid biosynthetic process | Yes |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0033764 | steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | No |
| GO:0009058 | biosynthetic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0016229 | steroid dehydrogenase activity | No |
| GO:0008202 | steroid metabolic process | No |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0006629 | lipid metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|003400 MPLKIVVCGAGFLGSNIARQIATAPKVNDITRRVQLSSRNPHRLHAKLEKEVPSHSLSPSIAVDVTKPNTLAPAF EGAKVIVSLVGLMHGSPQQFDEIQWHGAENVAYAAKQVGAKLVHFSAIGADAGSHIPYARTKGLAEKSVLEICPN ATIIRPSLVFGPEDDFFNRFAKLARFLPFLPVYGGGTSRFQPVYVGDLARAVEIISRLDATIEKQVSGKITEAGG PDIFTFKQLMELVLDYSHRRRPIISFPFAFGYMQGAILEKLPVNLFTVTRAQVEQLRKDNIVTEENGESRFSFKN LIAEGYHPPLRSLVEILPQYLQ* |
| Coding | >AgabiH97|003400 ATGCCCTTGAAAATCGTTGTATGCGGCGCAGGCTTCTTGGGTTCTAACATTGCTCGGCAAATCGCCACCGCTCCG AAAGTGAACGACATAACGCGTCGCGTACAACTTTCCTCTCGTAACCCCCATCGTCTTCATGCCAAACTTGAGAAA GAGGTTCCGAGCCACTCTCTTTCTCCATCAATCGCAGTGGACGTGACTAAACCTAATACTCTTGCGCCCGCCTTT GAAGGTGCTAAAGTTATAGTATCGCTCGTTGGTTTAATGCACGGCTCTCCACAGCAATTTGATGAAATCCAGTGG CACGGAGCAGAAAATGTCGCATATGCCGCAAAACAAGTAGGAGCGAAACTGGTGCATTTCAGTGCAATAGGTGCA GACGCTGGTAGCCATATACCATACGCGAGGACCAAGGGGCTAGCAGAAAAGTCGGTACTGGAAATCTGTCCAAAT GCGACGATTATCAGACCAAGCTTGGTATTCGGGCCAGAAGATGACTTCTTCAATAGGTTTGCGAAGCTTGCCAGA TTTTTGCCTTTCTTACCGGTGTATGGTGGGGGAACTTCACGATTTCAACCGGTGTACGTTGGCGACCTGGCCCGC GCAGTTGAAATCATTTCGAGGTTGGATGCGACGATTGAGAAACAGGTCTCTGGAAAGATAACCGAAGCAGGCGGT CCCGATATCTTCACATTCAAGCAGCTCATGGAGCTTGTCCTCGATTACTCGCATCGTCGCCGACCTATCATATCC TTTCCTTTTGCATTCGGATACATGCAGGGCGCCATTTTGGAAAAGCTTCCCGTCAACCTTTTCACGGTGACTCGG GCCCAGGTTGAACAGCTCAGGAAGGACAACATCGTCACTGAGGAAAATGGCGAAAGCAGATTTTCCTTCAAAAAC TTGATAGCGGAAGGATATCATCCACCTTTGAGGTCTTTGGTAGAAATCTTGCCTCAGTACTTACAATAG |
| Transcript | >AgabiH97|003400 ATGCCCTTGAAAATCGTTGTATGCGGCGCAGGCTTCTTGGGTTCTAACATTGCTCGGCAAATCGCCACCGCTCCG AAAGTGAACGACATAACGCGTCGCGTACAACTTTCCTCTCGTAACCCCCATCGTCTTCATGCCAAACTTGAGAAA GAGGTTCCGAGCCACTCTCTTTCTCCATCAATCGCAGTGGACGTGACTAAACCTAATACTCTTGCGCCCGCCTTT GAAGGTGCTAAAGTTATAGTATCGCTCGTTGGTTTAATGCACGGCTCTCCACAGCAATTTGATGAAATCCAGTGG CACGGAGCAGAAAATGTCGCATATGCCGCAAAACAAGTAGGAGCGAAACTGGTGCATTTCAGTGCAATAGGTGCA GACGCTGGTAGCCATATACCATACGCGAGGACCAAGGGGCTAGCAGAAAAGTCGGTACTGGAAATCTGTCCAAAT GCGACGATTATCAGACCAAGCTTGGTATTCGGGCCAGAAGATGACTTCTTCAATAGGTTTGCGAAGCTTGCCAGA TTTTTGCCTTTCTTACCGGTGTATGGTGGGGGAACTTCACGATTTCAACCGGTGTACGTTGGCGACCTGGCCCGC GCAGTTGAAATCATTTCGAGGTTGGATGCGACGATTGAGAAACAGGTCTCTGGAAAGATAACCGAAGCAGGCGGT CCCGATATCTTCACATTCAAGCAGCTCATGGAGCTTGTCCTCGATTACTCGCATCGTCGCCGACCTATCATATCC TTTCCTTTTGCATTCGGATACATGCAGGGCGCCATTTTGGAAAAGCTTCCCGTCAACCTTTTCACGGTGACTCGG GCCCAGGTTGAACAGCTCAGGAAGGACAACATCGTCACTGAGGAAAATGGCGAAAGCAGATTTTCCTTCAAAAAC TTGATAGCGGAAGGATATCATCCACCTTTGAGGTCTTTGGTAGAAATCTTGCCTCAGTACTTACAATAG |
| Gene | >AgabiH97|003400 ATGCCCTTGAAAATCGTTGTATGCGGCGCAGGCTTCTTGGGTGAGTTATCTTCCTCATTCTCCGGTTAGGTCTGA CCCAGAGGAATTTGGAGGTTCTAACATTGCTCGGCAAATCGCCACCGCTCCGAAAGTGAACGACATAACGCGTCG CGTACAACTTTCCTCTCGTAACCCCCATCGTCTTCATGCCAAACTTGAGAAAGAGGTTCCGAGCCACTCTCTTTC TCCATCAATCGCAGTGGACGTGACTAAACCTAATACTCTTGCGCCCGCCTTTGAAGGTGCTAAAGTTATAGTATC GCTCGTTGGTTTAATGCACGGCTCTCCACAGCAATTTGATGAAATCCAGTGGCACGGAGCAGAAAATGTCGCATA TGCCGCAAAACAAGTAGGAGCGAAACTGGTGCATTTCAGTGCAATAGGTGCAGACGCTGGTAGCCATATACCATA CGCGAGGACCAAGGGGCTAGCAGAAAAGTCGGTACTGGAAATCTGTCCAAATGCGACGATTATCAGACCAAGCTT GGTATTCGGGCCAGAAGATGACTTCTTCAATGTGAATCAGCTCCACTTCCGCTTTGTCACTTACGCATATCCATT TGATAGAGGTTTGCGAAGCTTGCCAGATTTTTGCCTTTCTTACCGGTGTATGGTGGGGGAACTTCACGATTTCAA CCGGTGTACGTTGGCGACCTGGCCCGCGCAGTTGAAATCATTTCGAGGTTGGATGCGACGATTGAGAAACAGGTC TCTGGAAAGATAACCGAAGCAGGCGGTCCCGATAGTAAGCACTTTTCCATGAGTCATACTCATGCAGATATTAGT GTTAACGGTACCTGGGAATAGTCTTCACATTCAAGCAGCTCATGGAGCTTGTCCTCGATTACTCGCATCGTCGCC GACCTATCATATCCTTTCCTTTTGCATTCGGATACATGCAGGGCGCCATTTTGGAAAAGCTTCCCGTCAACCTTT TCACGGTGACTCGGGCCCAGGTGAGAAGTCCATCAGTTCTGATGCATTGTCATATTGATATTGAGTTATGGCATG TTAAGGTTGAACAGCTCAGGAAGGACAACATCGTCACTGAGGAAAATGGCGAAAGCAGATTTTCCTTCAAAAACT TGATAGCGGAAGGATATCATCCACCTTTGAGGTCTTTGGTAGAAATCTTGCCTCAGTACTTACAATAG |