© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|003210 |
| Gene name | |
| Location | scaffold_1:812295..813482 |
| Strand | - |
| Gene length (bp) | 1187 |
| Transcript length (bp) | 1035 |
| Coding sequence length (bp) | 1035 |
| Protein length (aa) | 345 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03998 | Utp11 | Utp11 protein | 5.9E-74 | 11 | 344 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10106|UTP11_SCHPO | Probable U3 small nucleolar RNA-associated protein 11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp11 PE=3 SV=1 | 1 | 344 | 1.0E-33 |
| sp|Q8S1Z1|UTP11_ORYSJ | Probable U3 small nucleolar RNA-associated protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0810000 PE=2 SV=2 | 3 | 121 | 2.0E-24 |
| sp|Q9CZJ1|UTP11_MOUSE | Probable U3 small nucleolar RNA-associated protein 11 OS=Mus musculus GN=Utp11l PE=2 SV=1 | 1 | 121 | 2.0E-24 |
| sp|P34247|UTP11_YEAST | U3 small nucleolar RNA-associated protein 11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP11 PE=1 SV=2 | 3 | 121 | 3.0E-24 |
| sp|A6ZZL7|UTP11_YEAS7 | U3 small nucleolar RNA-associated protein 11 OS=Saccharomyces cerevisiae (strain YJM789) GN=UTP11 PE=3 SV=1 | 3 | 121 | 3.0E-24 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10106|UTP11_SCHPO | Probable U3 small nucleolar RNA-associated protein 11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp11 PE=3 SV=1 | 1 | 344 | 1.0E-33 |
| sp|Q8S1Z1|UTP11_ORYSJ | Probable U3 small nucleolar RNA-associated protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0810000 PE=2 SV=2 | 3 | 121 | 2.0E-24 |
| sp|Q9CZJ1|UTP11_MOUSE | Probable U3 small nucleolar RNA-associated protein 11 OS=Mus musculus GN=Utp11l PE=2 SV=1 | 1 | 121 | 2.0E-24 |
| sp|P34247|UTP11_YEAST | U3 small nucleolar RNA-associated protein 11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP11 PE=1 SV=2 | 3 | 121 | 3.0E-24 |
| sp|A6ZZL7|UTP11_YEAS7 | U3 small nucleolar RNA-associated protein 11 OS=Saccharomyces cerevisiae (strain YJM789) GN=UTP11 PE=3 SV=1 | 3 | 121 | 3.0E-24 |
| sp|B5VM59|UTP11_YEAS6 | U3 small nucleolar RNA-associated protein 11 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=UTP11 PE=3 SV=1 | 3 | 121 | 3.0E-24 |
| sp|Q9M223|UTP11_ARATH | Probable U3 small nucleolar RNA-associated protein 11 OS=Arabidopsis thaliana GN=At3g60360 PE=1 SV=1 | 3 | 126 | 2.0E-23 |
| sp|Q9Y3A2|UTP11_HUMAN | Probable U3 small nucleolar RNA-associated protein 11 OS=Homo sapiens GN=UTP11L PE=1 SV=2 | 1 | 121 | 3.0E-21 |
| sp|Q8R5K5|UTP11_RAT | Probable U3 small nucleolar RNA-associated protein 11 OS=Rattus norvegicus GN=Utp11l PE=2 SV=1 | 1 | 121 | 6.0E-21 |
| sp|Q55C50|UTP11_DICDI | Probable U3 small nucleolar RNA-associated protein 11 OS=Dictyostelium discoideum GN=utp11 PE=3 SV=1 | 1 | 124 | 9.0E-16 |
| sp|Q9W3C0|UTP11_DROME | Probable U3 small nucleolar RNA-associated protein 11 OS=Drosophila melanogaster GN=CG1789 PE=2 SV=1 | 14 | 144 | 3.0E-12 |
| sp|Q09462|UTP11_CAEEL | Probable U3 small nucleolar RNA-associated protein 11 OS=Caenorhabditis elegans GN=C16C10.2 PE=3 SV=1 | 11 | 121 | 1.0E-09 |
| sp|Q9U178|UTP11_LEIMA | Probable U3 small nucleolar RNA-associated protein 11 OS=Leishmania major GN=L374.02 PE=3 SV=1 | 2 | 70 | 2.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0032040 | small-subunit processome | Yes |
| GO:0006364 | rRNA processing | Yes |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:1990904 | ribonucleoprotein complex | No |
| GO:0034470 | ncRNA processing | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0030684 | preribosome | No |
| GO:0032991 | protein-containing complex | No |
| GO:0016072 | rRNA metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0009987 | cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 55 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|003210 MTSSLRNSLHRRNHKERSQLAHRTKLGILEKHKDYVQRARDYHSKQDRLTRLRQKAADRNKDEFYFSMIKEKTKG GVHIKDRGNTALPVDIVKVLKTQDENYVRTMRTSNAKKIDSLKNQLTTMADLIRDPLVEDDEEGLDEGELKVLRE AGILQTPKNRKRRKTNHILFADSIEEAKQLTSQPPKRLLPENTQSSATSPLTEVDLGWKSDERKRKRRKPSRPIV LTTENVEDDTSDLDIAHDGSQPQTTTKHRLLKELSARLRRDLQLRYAQREFEMQRLLMGKGARKKIAGVEKANGD QESDEEEDQDEIDARKGRRRNTTKKVDEETYKPRVYKWKSERKR* |
| Coding | >AgabiH97|003210 ATGACGTCCTCCCTCCGGAATTCCCTCCATCGGAGGAACCACAAGGAGCGCTCGCAGCTAGCCCACCGCACGAAA CTTGGCATCCTCGAGAAACACAAAGACTATGTCCAACGAGCCAGGGACTATCACTCCAAGCAGGATAGGCTGACC CGCCTCAGGCAAAAGGCTGCCGACCGCAACAAAGATGAATTCTACTTTTCTATGATCAAAGAAAAGACGAAGGGA GGTGTGCATATCAAGGATCGAGGAAATACTGCTCTGCCAGTCGATATCGTTAAAGTGCTCAAAACTCAAGACGAG AACTATGTCCGGACGATGCGTACATCCAATGCAAAGAAAATCGACAGCCTCAAAAACCAATTAACCACCATGGCA GATCTAATAAGAGACCCCTTGGTTGAGGATGACGAAGAGGGTCTCGATGAAGGCGAGCTCAAGGTTCTTCGTGAA GCAGGTATACTGCAGACGCCTAAAAATCGTAAACGGCGGAAAACCAATCATATCCTATTTGCTGACTCGATAGAA GAAGCAAAACAGCTAACTTCGCAACCTCCCAAACGACTCCTTCCCGAAAACACCCAATCTTCCGCAACTTCTCCT TTGACCGAAGTTGATCTTGGCTGGAAGTCTGACGAACGAAAACGGAAGCGCCGAAAACCATCTCGTCCTATTGTC CTTACCACAGAGAATGTAGAGGACGATACTTCTGATCTCGATATTGCACACGACGGTTCCCAACCGCAAACCACC ACGAAACACCGTCTCCTAAAAGAACTTTCCGCCCGGCTCCGGCGAGACTTACAATTGCGCTATGCACAACGTGAA TTCGAAATGCAACGGCTGCTCATGGGGAAGGGAGCCCGCAAGAAGATTGCTGGAGTAGAAAAGGCGAATGGAGAT CAGGAATCCGATGAGGAGGAAGATCAGGATGAGATTGATGCACGGAAAGGTAGACGGCGAAACACAACCAAGAAG GTGGATGAAGAGACTTACAAACCTCGAGTTTACAAATGGAAGAGCGAGCGTAAGCGGTAA |
| Transcript | >AgabiH97|003210 ATGACGTCCTCCCTCCGGAATTCCCTCCATCGGAGGAACCACAAGGAGCGCTCGCAGCTAGCCCACCGCACGAAA CTTGGCATCCTCGAGAAACACAAAGACTATGTCCAACGAGCCAGGGACTATCACTCCAAGCAGGATAGGCTGACC CGCCTCAGGCAAAAGGCTGCCGACCGCAACAAAGATGAATTCTACTTTTCTATGATCAAAGAAAAGACGAAGGGA GGTGTGCATATCAAGGATCGAGGAAATACTGCTCTGCCAGTCGATATCGTTAAAGTGCTCAAAACTCAAGACGAG AACTATGTCCGGACGATGCGTACATCCAATGCAAAGAAAATCGACAGCCTCAAAAACCAATTAACCACCATGGCA GATCTAATAAGAGACCCCTTGGTTGAGGATGACGAAGAGGGTCTCGATGAAGGCGAGCTCAAGGTTCTTCGTGAA GCAGGTATACTGCAGACGCCTAAAAATCGTAAACGGCGGAAAACCAATCATATCCTATTTGCTGACTCGATAGAA GAAGCAAAACAGCTAACTTCGCAACCTCCCAAACGACTCCTTCCCGAAAACACCCAATCTTCCGCAACTTCTCCT TTGACCGAAGTTGATCTTGGCTGGAAGTCTGACGAACGAAAACGGAAGCGCCGAAAACCATCTCGTCCTATTGTC CTTACCACAGAGAATGTAGAGGACGATACTTCTGATCTCGATATTGCACACGACGGTTCCCAACCGCAAACCACC ACGAAACACCGTCTCCTAAAAGAACTTTCCGCCCGGCTCCGGCGAGACTTACAATTGCGCTATGCACAACGTGAA TTCGAAATGCAACGGCTGCTCATGGGGAAGGGAGCCCGCAAGAAGATTGCTGGAGTAGAAAAGGCGAATGGAGAT CAGGAATCCGATGAGGAGGAAGATCAGGATGAGATTGATGCACGGAAAGGTAGACGGCGAAACACAACCAAGAAG GTGGATGAAGAGACTTACAAACCTCGAGTTTACAAATGGAAGAGCGAGCGTAAGCGGTAA |
| Gene | >AgabiH97|003210 ATGACGTCCTCCCTCCGGAATTCCCTCCATCGGAGGAACCACAAGGAGCGCTCGCAGCTAGCCCACCGCACGAAA CTTGGCATCCTCGAGAAACACAAAGACTATGTCCAACGAGCCAGGGACTATCACTCCAAGCAGGATAGGCTGACC CGCCTCAGGCAAAAGGCTGCCGACCGCAACAAAGATGAATTCTACTTTTCTATGATCAAAGAAAAGACGAAGGTG CGAGAATCACCTATTAGCGACACTGTCAAAATTCTCATTGTTTGAAAGGGAGGTGTGCATATCAAGGATCGAGGA AATACTGCTCTGCCAGTCGATATCGTTAAAGTGCTCAAAACTCAAGACGAGAACTATGTCCGGACGATGCGTACA TCCAATGCAAAGGTCAGTGTTACTATTTTGACTTGCATGTCCGTTATTCACCATCTCACCAGAAAATCGACAGCC TCAAAAACCAATTAACCACCATGGCAGATCTAATAAGAGACCCCTTGGTTGAGGATGACGAAGAGGGTCTCGATG AAGGCGAGCTCAAGGTTCTTCGTGAAGCAGGTATACTGCAGACGCCTAAAAATCGTAAACGGCGGAAAACCAATC ATATCCTATTTGCTGACTCGATAGAAGAAGGTATAACCTACTTCCCTTGCTTGCAAGTCGACCAATAACCTCGCA TTATAGCAAAACAGCTAACTTCGCAACCTCCCAAACGACTCCTTCCCGAAAACACCCAATCTTCCGCAACTTCTC CTTTGACCGAAGTTGATCTTGGCTGGAAGTCTGACGAACGAAAACGGAAGCGCCGAAAACCATCTCGTCCTATTG TCCTTACCACAGAGAATGTAGAGGACGATACTTCTGATCTCGATATTGCACACGACGGTTCCCAACCGCAAACCA CCACGAAACACCGTCTCCTAAAAGAACTTTCCGCCCGGCTCCGGCGAGACTTACAATTGCGCTATGCACAACGTG AATTCGAAATGCAACGGCTGCTCATGGGGAAGGGAGCCCGCAAGAAGATTGCTGGAGTAGAAAAGGCGAATGGAG ATCAGGAATCCGATGAGGAGGAAGATCAGGATGAGATTGATGCACGGAAAGGTAGACGGCGAAACACAACCAAGA AGGTGGATGAAGAGACTTACAAACCTCGAGTTTACAAATGGAAGAGCGAGCGTAAGCGGTAA |