Fungal Genomics

General Properties

Protein ID	AgabiH97|002910
Gene name
Location	scaffold_1:745491..746123
Strand	-
Gene length (bp)	632
Transcript length (bp)	399
Coding sequence length (bp)	399
Protein length (aa)	133

Overview

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00545	Ribonuclease	ribonuclease	1.5E-07	51	129

Swissprot hits

GO

GO Term	Description	Terminal node
GO:0003723	RNA binding	Yes
GO:0004521	endoribonuclease activity	Yes
GO:0003674	molecular_function	No
GO:0005488	binding	No
GO:0004540	ribonuclease activity	No
GO:0097159	organic cyclic compound binding	No
GO:0004519	endonuclease activity	No
GO:1901363	heterocyclic compound binding	No
GO:0003676	nucleic acid binding	No
GO:0140640	catalytic activity, acting on a nucleic acid	No
GO:0003824	catalytic activity	No
GO:0016787	hydrolase activity	No
GO:0016788	hydrolase activity, acting on ester bonds	No
GO:0140098	catalytic activity, acting on RNA	No
GO:0004518	nuclease activity	No

Deeploc

[Help with interpreting the results of Deeploc 2.0]

Localizations	Signals	Cytoplasm	Nucleus	Extracellular	Cell membrane	Mitochondrion	Plastid	Endoplasmic reticulum	Lysosome vacuole	Golgi apparatus	Peroxisome
Extracellular	Signal peptide	0.0802	0.0364	0.9675	0.0637	0.035	0.0124	0.1362	0.1032	0.1211	0.0023

SignalP

SignalP signal predicted	Location	Score
Yes	1 - 25	0.999725

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Orthologs

Orthofinder run ID	1
Orthogroup	656
Change Orthofinder run	1: Agaricomycetes 5: Agaricus - all strains

Species	Protein ID
Agaricus bisporus var bisporus H39	AgabiH39|002910
Agaricus bisporus var bisporus H97	AgabiH97|002910 (this protein)

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|002910 MRSILSSAPVLLAVVSGFLFQAVKAIPFDLEARAQACNCAGRSYSATSVQNGINKALSGGAGDYPHEYHNFEGFN FGCSGSTYFEYPILTSGTYNGGSPGADRVVYDNLDNFCSCLTHTGAPSTNGFVECNF*
Coding	>AgabiH97|002910 ATGCGATCCATCCTGTCTTCCGCTCCAGTCCTCTTGGCCGTTGTTTCAGGCTTCCTCTTCCAAGCTGTTAAGGCC ATCCCTTTCGATCTCGAAGCAAGGGCACAGGCTTGTAATTGTGCCGGACGCAGTTATTCTGCTACATCGGTCCAA AATGGTATTAACAAGGCGCTGTCAGGGGGCGCTGGCGACTATCCCCATGAGTATCACAACTTTGAGGGTTTCAAC TTTGGCTGCTCTGGCAGCACCTATTTCGAGTATCCCATCCTGACCAGCGGTACATATAACGGTGGATCCCCTGGC GCCGACCGCGTTGTCTATGACAACCTCGATAACTTCTGTTCCTGCCTTACCCACACTGGCGCCCCGTCCACCAAT GGTTTTGTGGAATGTAACTTCTAA
Transcript	>AgabiH97|002910 ATGCGATCCATCCTGTCTTCCGCTCCAGTCCTCTTGGCCGTTGTTTCAGGCTTCCTCTTCCAAGCTGTTAAGGCC ATCCCTTTCGATCTCGAAGCAAGGGCACAGGCTTGTAATTGTGCCGGACGCAGTTATTCTGCTACATCGGTCCAA AATGGTATTAACAAGGCGCTGTCAGGGGGCGCTGGCGACTATCCCCATGAGTATCACAACTTTGAGGGTTTCAAC TTTGGCTGCTCTGGCAGCACCTATTTCGAGTATCCCATCCTGACCAGCGGTACATATAACGGTGGATCCCCTGGC GCCGACCGCGTTGTCTATGACAACCTCGATAACTTCTGTTCCTGCCTTACCCACACTGGCGCCCCGTCCACCAAT GGTTTTGTGGAATGTAACTTCTAA
Gene	>AgabiH97|002910 ATGCGATCCATCCTGTCTTCCGCTCCAGTCCTCTTGGCCGTTGTTTCAGGCTTCCTCTTCCAAGCTGTTAAGGCC ATCCCTTTCGATCTCGAAGCAAGGGCACAGGCTTGTAATTGTGCCGGTCCGTGATTACCGTTTATATCATACGCT GATCTATCGCACTGACCTCGTTGATAATCACAGGACGCAGTTATTCTGCTACATCGGTCCAAAATGGTATTAACA AGGCGCTGTCAGGGGGCGCTGGGTGGGTTGGGACAATTGTTCTTTCAACTGATCAAGCTGACGTCCTCGCAACGA TCCAGCGACTATCCCCATGAGTATCACAACTTTGAGGTGAGCCTTAAGCTGAATTGGAAAGATGTGATGCCGGAT CTGACCTTGATAATGTGCTGCAGGGTTTCAACTTTGGCTGCTCTGGCAGCACCTATTTCGAGTATCCCATCCTGA CCAGCGGTACATATAACGGTGGATCCCCTGGCGCCGACCGCGTTGTCTATGACAACCTCGATAACTTCTGTTGTA TGTCAAAGATTTTTGATTTTGCACACAGTATCTTAGTTCTTTGCCTAGCCTGCCTTACCCACACTGGCGCCCCGT CCACCAATGGTTTTGTGGAATGTAACTTCTAA