© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|002630 |
| Gene name | |
| Location | scaffold_1:667990..669037 |
| Strand | - |
| Gene length (bp) | 1047 |
| Transcript length (bp) | 876 |
| Coding sequence length (bp) | 876 |
| Protein length (aa) | 292 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00107 | ADH_zinc_N | Zinc-binding dehydrogenase | 9.5E-10 | 102 | 183 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9Y7D0|LOVC_ASPTE | Enoyl reductase LovC OS=Aspergillus terreus GN=lovC PE=1 SV=1 | 1 | 289 | 5.0E-14 |
| sp|P54006|TOXD_COCCA | Protein TOXD OS=Cochliobolus carbonum GN=TOXD PE=3 SV=1 | 2 | 178 | 2.0E-12 |
| sp|P25608|YCZ2_YEAST | Uncharacterized protein YCR102C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR102C PE=3 SV=1 | 44 | 172 | 2.0E-11 |
| sp|P54007|YL460_YEAST | Uncharacterized protein YLR460C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR460C PE=1 SV=1 | 44 | 214 | 9.0E-11 |
| sp|Q9HCJ6|VAT1L_HUMAN | Synaptic vesicle membrane protein VAT-1 homolog-like OS=Homo sapiens GN=VAT1L PE=1 SV=2 | 3 | 182 | 2.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9Y7D0|LOVC_ASPTE | Enoyl reductase LovC OS=Aspergillus terreus GN=lovC PE=1 SV=1 | 1 | 289 | 5.0E-14 |
| sp|P54006|TOXD_COCCA | Protein TOXD OS=Cochliobolus carbonum GN=TOXD PE=3 SV=1 | 2 | 178 | 2.0E-12 |
| sp|P25608|YCZ2_YEAST | Uncharacterized protein YCR102C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR102C PE=3 SV=1 | 44 | 172 | 2.0E-11 |
| sp|P54007|YL460_YEAST | Uncharacterized protein YLR460C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR460C PE=1 SV=1 | 44 | 214 | 9.0E-11 |
| sp|Q9HCJ6|VAT1L_HUMAN | Synaptic vesicle membrane protein VAT-1 homolog-like OS=Homo sapiens GN=VAT1L PE=1 SV=2 | 3 | 182 | 2.0E-10 |
| sp|Q80TB8|VAT1L_MOUSE | Synaptic vesicle membrane protein VAT-1 homolog-like OS=Mus musculus GN=Vat1l PE=1 SV=2 | 3 | 182 | 4.0E-10 |
| sp|P53912|YNN4_YEAST | Uncharacterized protein YNL134C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL134C PE=1 SV=1 | 44 | 173 | 4.0E-10 |
| sp|Q99536|VAT1_HUMAN | Synaptic vesicle membrane protein VAT-1 homolog OS=Homo sapiens GN=VAT1 PE=1 SV=2 | 1 | 180 | 7.0E-09 |
| sp|Q8JFV8|VAT1_DANRE | Synaptic vesicle membrane protein VAT-1 homolog OS=Danio rerio GN=vat1 PE=2 SV=1 | 3 | 178 | 1.0E-08 |
| sp|Q9P7F4|YKK1_SCHPO | Zinc-type alcohol dehydrogenase-like protein C2E1P3.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2E1P3.01 PE=3 SV=1 | 39 | 289 | 3.0E-08 |
| sp|Q5AUY5|CIPB_EMENI | Zinc-binding alcohol dehydrogenase domain-containing protein cipB OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cipB PE=1 SV=1 | 1 | 189 | 1.0E-07 |
| sp|Q3MIE4|VAT1_RAT | Synaptic vesicle membrane protein VAT-1 homolog OS=Rattus norvegicus GN=Vat1 PE=1 SV=1 | 9 | 180 | 5.0E-06 |
| sp|Q62465|VAT1_MOUSE | Synaptic vesicle membrane protein VAT-1 homolog OS=Mus musculus GN=Vat1 PE=1 SV=3 | 9 | 180 | 5.0E-06 |
| sp|O94564|YGD6_SCHPO | Zinc-type alcohol dehydrogenase-like protein C1773.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1773.06c PE=3 SV=1 | 5 | 173 | 9.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 47 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 4.38 | 1.56 | 7.21 |
| Initials | Initials knots | 5.77 | 2.42 | 9.12 |
| Pileal_Stipeal_center | Stage I stipe center | 4.03 | 1.55 | 6.51 |
| Pileal_Stipeal_shell | Stage I stipe shell | 5.31 | 2.14 | 8.49 |
| DIF_stipe_center | Stage II stipe center | 3.33 | 1.20 | 5.46 |
| DIF_stipe_shell | Stage II stipe shell | 3.83 | 1.46 | 6.21 |
| DIF_stipe_skin | Stage II stipe skin | 4.33 | 1.70 | 6.95 |
| DIF_cap_skin | Stage II cap skin | 4.94 | 1.98 | 7.90 |
| DIF_cap_tissue | Stage II cap tissue | 3.44 | 1.25 | 5.63 |
| DIF_gill_tissue | Stage II gill tissue | 4.81 | 1.93 | 7.69 |
| YFB_stipe_center | Young fruiting body stipe center | 3.67 | 1.37 | 5.96 |
| YFB_stipe_shell | Young fruiting body stipe shell | 3.06 | 1.10 | 5.03 |
| YFB_stipe_skin | Young fruiting body stipe skin | 3.50 | 1.27 | 5.74 |
| YFB_cap_skin | Young fruiting body cap skin | 4.20 | 1.64 | 6.76 |
| YFB_cap_tissue | Young fruiting body cap tissue | 3.47 | 1.26 | 5.68 |
| YFB_gill_tissue | Young fruiting body gill tissue | 4.69 | 1.87 | 7.51 |
| YFB_veil | Young fruiting body veil | 5.10 | 2.08 | 8.13 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.906448 | no |
| Casing | YFB_stipe_center | 0.802540 | no |
| Casing | YFB_stipe_shell | 0.535545 | no |
| Casing | YFB_stipe_skin | 0.743952 | no |
| Casing | YFB_cap_skin | 0.960749 | no |
| Casing | YFB_cap_tissue | 0.729483 | no |
| Casing | YFB_gill_tissue | 0.934449 | no |
| Casing | YFB_veil | 0.834099 | no |
| Casing | Initials | 0.642121 | no |
| Casing | Pileal_Stipeal_center | 0.920085 | no |
| Casing | Pileal_Stipeal_shell | 0.777889 | no |
| Casing | DIF_stipe_center | 0.668490 | no |
| Casing | DIF_stipe_shell | 0.860294 | no |
| Casing | DIF_stipe_skin | 0.987817 | no |
| Casing | DIF_cap_skin | 0.874909 | no |
| Casing | DIF_cap_tissue | 0.716204 | no |
| DIF_gill_tissue | YFB_stipe_center | 0.650572 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.366713 | no |
| DIF_gill_tissue | YFB_stipe_skin | 0.579844 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.851575 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.562579 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.975745 | no |
| DIF_gill_tissue | YFB_veil | 0.941912 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.801630 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.959371 | no |
| YFB_stipe_center | YFB_cap_skin | 0.856474 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.950703 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.691982 | no |
| YFB_stipe_center | YFB_veil | 0.554291 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.865135 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.588481 | no |
| YFB_stipe_shell | YFB_cap_tissue | 0.875557 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.409135 | no |
| YFB_stipe_shell | YFB_veil | 0.293079 | no |
| YFB_stipe_skin | YFB_cap_skin | 0.793173 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.990391 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.616936 | no |
| YFB_stipe_skin | YFB_veil | 0.481961 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.778073 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.881432 | no |
| YFB_cap_skin | YFB_veil | 0.760720 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.603568 | no |
| YFB_cap_tissue | YFB_veil | 0.465043 | no |
| YFB_gill_tissue | YFB_veil | 0.914475 | no |
| Initials | DIF_gill_tissue | 0.775760 | no |
| Initials | YFB_stipe_center | 0.345643 | no |
| Initials | YFB_stipe_shell | 0.149487 | no |
| Initials | YFB_stipe_skin | 0.289380 | no |
| Initials | YFB_cap_skin | 0.549543 | no |
| Initials | YFB_cap_tissue | 0.276237 | no |
| Initials | YFB_gill_tissue | 0.734118 | no |
| Initials | YFB_veil | 0.860717 | no |
| Initials | Pileal_Stipeal_center | 0.479928 | no |
| Initials | Pileal_Stipeal_shell | 0.913092 | no |
| Initials | DIF_stipe_center | 0.234962 | no |
| Initials | DIF_stipe_shell | 0.398759 | no |
| Initials | DIF_stipe_skin | 0.606318 | no |
| Initials | DIF_cap_skin | 0.812167 | no |
| Initials | DIF_cap_tissue | 0.268160 | no |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.787924 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.902583 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.644843 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.848233 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.961663 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.837178 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.826794 | no |
| Pileal_Stipeal_center | YFB_veil | 0.696428 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.631610 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.776711 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.951666 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.930536 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.746129 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.823241 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.896450 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.494627 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.242550 | no |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.427938 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.707255 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.407913 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.865077 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.960220 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.356290 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.552744 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.753818 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.925627 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.396816 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.501883 | no |
| DIF_stipe_center | YFB_stipe_center | 0.906704 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.919969 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.956612 | no |
| DIF_stipe_center | YFB_cap_skin | 0.721293 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.964588 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.540464 | no |
| DIF_stipe_center | YFB_veil | 0.407453 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.848999 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.675621 | no |
| DIF_stipe_center | DIF_cap_skin | 0.451917 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.972114 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.714238 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.957088 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.729112 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.909219 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.908349 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.899673 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.751587 | no |
| DIF_stipe_shell | YFB_veil | 0.615658 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.868986 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.667222 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.889246 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.886322 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.812196 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.530896 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.749074 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.971447 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.734038 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.918159 | no |
| DIF_stipe_skin | YFB_veil | 0.807554 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.853833 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.720694 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.975724 | no |
| DIF_cap_skin | YFB_stipe_center | 0.605834 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.326848 | no |
| DIF_cap_skin | YFB_stipe_skin | 0.536138 | no |
| DIF_cap_skin | YFB_cap_skin | 0.813508 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.517087 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.950386 | no |
| DIF_cap_skin | YFB_veil | 0.967291 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.507667 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.552856 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.939815 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.883329 | no |
| DIF_cap_tissue | YFB_stipe_skin | 0.983795 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.768668 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.991102 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.593139 | no |
| DIF_cap_tissue | YFB_veil | 0.458171 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|002630 MKVGSNIKDLKPTDRVTTFSYGPSRYKGIQQYAVQPRSIPGNLSFDAAATIPDNFACAFYILFNQLSLPMPLSLP TLETPPLANSPILIYGAGSTAGQYMTRLLYLARYKNIIATASAKHHEYLRSLGATHVFDYRSSTLIEDINNVVGG SNKLTMVVDCISATTTMNNIAKVLKPTGTVALLMPVKKGTTLNVDEESDLITTLPLPDQLNPFGEKANVIGVRTF FYQEDTVLKERLLPAILPELLEKGLIEAPRYRIMDQGSLQQRAEQALELLRTNQLSGEKVIVKVSD* |
| Coding | >AgabiH97|002630 ATGAAAGTTGGAAGCAATATCAAAGATCTGAAACCCACTGATCGGGTTACGACGTTCTCCTATGGACCCTCTCGC TATAAGGGGATCCAGCAATATGCAGTTCAGCCTAGGAGTATCCCTGGCAATTTGTCCTTCGATGCTGCCGCGACG ATTCCGGACAATTTCGCCTGCGCATTCTATATATTGTTCAATCAACTCTCCCTCCCTATGCCACTGAGTCTCCCT ACCTTGGAGACCCCCCCTCTCGCCAACTCTCCAATCTTGATCTACGGTGCCGGATCGACCGCTGGGCAGTATATG ACTCGCCTCCTTTACCTTGCTCGCTATAAAAACATCATTGCCACGGCTTCCGCAAAACATCACGAATACCTCCGT AGTCTTGGGGCAACACATGTATTCGACTACCGCAGTTCAACTCTCATCGAAGACATCAATAACGTAGTCGGAGGG TCGAATAAACTGACCATGGTCGTTGATTGTATTTCCGCCACGACTACCATGAACAACATTGCAAAAGTCTTGAAA CCAACGGGGACTGTGGCACTACTGATGCCCGTCAAAAAAGGGACGACGTTGAATGTAGACGAGGAGAGTGATCTG ATCACGACTTTGCCGCTACCAGACCAGTTGAATCCGTTCGGAGAAAAAGCCAATGTCATTGGCGTTAGGACGTTT TTTTACCAAGAGGATACGGTATTGAAAGAGAGGCTACTCCCAGCCATTCTCCCAGAACTGCTGGAAAAGGGATTA ATCGAGGCCCCGCGTTATCGTATTATGGACCAAGGAAGTCTTCAACAGAGAGCAGAGCAGGCGTTGGAGTTGCTC AGAACGAACCAACTGAGTGGGGAGAAAGTTATTGTTAAAGTTTCGGATTGA |
| Transcript | >AgabiH97|002630 ATGAAAGTTGGAAGCAATATCAAAGATCTGAAACCCACTGATCGGGTTACGACGTTCTCCTATGGACCCTCTCGC TATAAGGGGATCCAGCAATATGCAGTTCAGCCTAGGAGTATCCCTGGCAATTTGTCCTTCGATGCTGCCGCGACG ATTCCGGACAATTTCGCCTGCGCATTCTATATATTGTTCAATCAACTCTCCCTCCCTATGCCACTGAGTCTCCCT ACCTTGGAGACCCCCCCTCTCGCCAACTCTCCAATCTTGATCTACGGTGCCGGATCGACCGCTGGGCAGTATATG ACTCGCCTCCTTTACCTTGCTCGCTATAAAAACATCATTGCCACGGCTTCCGCAAAACATCACGAATACCTCCGT AGTCTTGGGGCAACACATGTATTCGACTACCGCAGTTCAACTCTCATCGAAGACATCAATAACGTAGTCGGAGGG TCGAATAAACTGACCATGGTCGTTGATTGTATTTCCGCCACGACTACCATGAACAACATTGCAAAAGTCTTGAAA CCAACGGGGACTGTGGCACTACTGATGCCCGTCAAAAAAGGGACGACGTTGAATGTAGACGAGGAGAGTGATCTG ATCACGACTTTGCCGCTACCAGACCAGTTGAATCCGTTCGGAGAAAAAGCCAATGTCATTGGCGTTAGGACGTTT TTTTACCAAGAGGATACGGTATTGAAAGAGAGGCTACTCCCAGCCATTCTCCCAGAACTGCTGGAAAAGGGATTA ATCGAGGCCCCGCGTTATCGTATTATGGACCAAGGAAGTCTTCAACAGAGAGCAGAGCAGGCGTTGGAGTTGCTC AGAACGAACCAACTGAGTGGGGAGAAAGTTATTGTTAAAGTTTCGGATTGA |
| Gene | >AgabiH97|002630 ATGAAAGTTGGAAGCAATATCAAAGATCTGAAACCCACTGATCGGGTATGCTTATCTTGTACATAAGAGGTTTGT GAGTACTCAGCGCTTTCGGCATAGGTTACGACGTTCTCCTATGGACCCTCTCGCTATAAGGGGATCCAGCAATAT GCAGTTCAGCCTAGGAGTGTATGCGCCAAGGCTTGTCGAGTCTTCACATTATTTGTGTCCCGACTGACGTGTTTT CAAAGATCCCTGGCAATTTGTCCTTCGATGCTGCCGCGACGATTCCGGACAATTTCGCCTGCGCATTCTATATAT TGTTCAATCAACTCTCCCTCCCTATGCCACTGAGTCTCCCTACCTTGGAGACCCCCCCTCTCGCCAACTCTCCAA TCTTGATCTACGGTGCCGGATCGACCGCTGGGCAGTATATGACTCGCCTCCTTTACCTTGCTCGCTATAAAAACA TCATTGCCACGGCTTCCGCAAAACATCACGAATACCTCCGTAGTCTTGGGGCAACACATGTATTCGACTACCGCA GTTCAACTCTCATCGAAGACATCAATAACGTAGTCGGAGGGTCGAATAAACTGACCATGGTCGTTGATTGTATTT CCGCCACGACTACCATGAACAACATTGCAAAAGTCTTGAAACCAACGGGGACTGTGGCACTACTGATGCCCGTCA AAAAAGGGACGACGTTGAATGTAGACGAGGAGAGTGATCTGATCACGACTTTGCCGCTACCAGACCAGTTGAATC CGTTCGGAGAAAAAGCCAATGTCATTGGCGTTAGGACGTTTTTTTACCAAGAGGTGCGTTACAGACGTCCAAGAC AGAAACGTAAAATTTCCTAAATTTTGATTGTAGGATACGGTATTGAAAGAGAGGCTACTCCCAGCCATTCTCCCA GAACTGCTGGAAAAGGGATTAATCGAGGCCCCGCGTTATCGTATTATGGACCAAGGAAGTCTTCAACAGAGAGCA GAGCAGGCGTTGGAGTTGCTCAGAACGAACCAACTGAGTGGGGAGAAAGTTATTGTTAAAGTTTCGGATTGA |