Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|002620
Gene name
Locationscaffold_1:666294..667868
Strand-
Gene length (bp)1574
Transcript length (bp)1290
Coding sequence length (bp)1290
Protein length (aa) 430

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01207 Dus Dihydrouridine synthase (Dus) 1.6E-25 132 254

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|O74731|DUS2_SCHPO tRNA-dihydrouridine(20) synthase [NAD(P)+] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dus2 PE=3 SV=1 27 310 1.0E-62
sp|P53720|DUS2_YEAST tRNA-dihydrouridine(20) synthase [NAD(P)+] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMM1 PE=1 SV=1 28 292 1.0E-42
sp|Q9NX74|DUS2L_HUMAN tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS2 PE=1 SV=1 28 288 9.0E-41
sp|Q9D7B1|DUS2L_MOUSE tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Mus musculus GN=Dus2 PE=1 SV=1 28 288 4.0E-40
sp|Q06063|DUS4_YEAST tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DUS4 PE=1 SV=1 35 252 5.0E-18
[Show all]
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Swissprot ID Swissprot Description Start End E-value
sp|O74731|DUS2_SCHPO tRNA-dihydrouridine(20) synthase [NAD(P)+] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dus2 PE=3 SV=1 27 310 1.0E-62
sp|P53720|DUS2_YEAST tRNA-dihydrouridine(20) synthase [NAD(P)+] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMM1 PE=1 SV=1 28 292 1.0E-42
sp|Q9NX74|DUS2L_HUMAN tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS2 PE=1 SV=1 28 288 9.0E-41
sp|Q9D7B1|DUS2L_MOUSE tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Mus musculus GN=Dus2 PE=1 SV=1 28 288 4.0E-40
sp|Q06063|DUS4_YEAST tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DUS4 PE=1 SV=1 35 252 5.0E-18
sp|Q9HGN6|DUS1_SCHPO tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dus1 PE=3 SV=1 22 259 8.0E-12
sp|P53759|DUS1_YEAST tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DUS1 PE=1 SV=1 34 252 1.0E-11
sp|Q8C2P3|DUS1L_MOUSE tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus musculus GN=Dus1l PE=2 SV=1 34 251 1.0E-11
sp|O95620|DUS4L_HUMAN tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS4L PE=2 SV=2 35 252 1.0E-11
sp|Q8K582|DUS1L_RAT tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus norvegicus GN=Dus1l PE=2 SV=1 34 251 4.0E-11
sp|Q6P1R4|DUS1L_HUMAN tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE=1 SV=1 34 251 6.0E-11
sp|Q32M08|DUS4L_MOUSE tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Mus musculus GN=Dus4l PE=2 SV=1 35 252 2.0E-10
sp|O74553|DUS4_SCHPO tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dus4 PE=3 SV=1 35 252 3.0E-10
sp|O67533|DUS_AQUAE Probable tRNA-dihydrouridine synthase OS=Aquifex aeolicus (strain VF5) GN=dus PE=3 SV=1 27 253 5.0E-10
sp|O68273|DUSC_CUPNH tRNA-dihydrouridine(16) synthase OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=dusC PE=3 SV=2 101 248 4.0E-09
sp|Q8XYX1|DUSC_RALSO tRNA-dihydrouridine(16) synthase OS=Ralstonia solanacearum (strain GMI1000) GN=dusC PE=3 SV=1 101 248 1.0E-08
sp|Q87N01|DUSC_VIBPA tRNA-dihydrouridine(16) synthase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=dusC PE=3 SV=1 105 249 2.0E-08
sp|P37567|DUS1_BACSU Probable tRNA-dihydrouridine synthase 1 OS=Bacillus subtilis (strain 168) GN=dus1 PE=3 SV=1 29 313 6.0E-08
sp|Q8EJR8|DUSB_SHEON tRNA-dihydrouridine synthase B OS=Shewanella oneidensis (strain MR-1) GN=dusB PE=3 SV=1 93 265 8.0E-08
sp|Q9JZL5|DUSC_NEIMB tRNA-dihydrouridine(16) synthase OS=Neisseria meningitidis serogroup B (strain MC58) GN=dusC PE=3 SV=1 87 248 1.0E-07
sp|O52536|DUSB_KLEPN tRNA-dihydrouridine synthase B OS=Klebsiella pneumoniae GN=dusB PE=3 SV=1 135 348 1.0E-07
sp|Q09504|YQI2_CAEEL Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2 OS=Caenorhabditis elegans GN=C45G9.2 PE=3 SV=2 101 280 2.0E-07
sp|Q884C6|DUSC_PSESM tRNA-dihydrouridine(16) synthase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=dusC PE=3 SV=1 132 248 2.0E-07
sp|Q54CU9|DUS3L_DICDI tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Dictyostelium discoideum GN=dus3l PE=3 SV=1 14 253 4.0E-07
sp|Q8ZAX7|DUSB_YERPE tRNA-dihydrouridine synthase B OS=Yersinia pestis GN=dusB PE=3 SV=1 104 277 5.0E-07
sp|P0A2R6|DUSB_SALTY tRNA-dihydrouridine synthase B OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=dusB PE=3 SV=1 132 348 1.0E-06
sp|P0A2R7|DUSB_SALTI tRNA-dihydrouridine synthase B OS=Salmonella typhi GN=dusB PE=3 SV=1 132 348 1.0E-06
sp|Q9CLW3|DUSB_PASMU tRNA-dihydrouridine synthase B OS=Pasteurella multocida (strain Pm70) GN=dusB PE=3 SV=2 22 264 1.0E-06
sp|Q87KU1|DUSB_VIBPA tRNA-dihydrouridine synthase B OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=dusB PE=3 SV=2 22 347 2.0E-06
sp|Q9KV66|DUSB_VIBCH tRNA-dihydrouridine synthase B OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=dusB PE=3 SV=2 22 253 5.0E-06
sp|O52533|DUSB_PROVU tRNA-dihydrouridine synthase B OS=Proteus vulgaris GN=dusB PE=3 SV=2 132 265 7.0E-06
sp|Q8PP72|DUSB_XANAC tRNA-dihydrouridine synthase B OS=Xanthomonas axonopodis pv. citri (strain 306) GN=dusB PE=3 SV=1 94 253 7.0E-06
sp|P44965|DUSB_HAEIN tRNA-dihydrouridine synthase B OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusB PE=3 SV=1 22 251 8.0E-06
sp|Q8EFG7|DUSC_SHEON tRNA-dihydrouridine(16) synthase OS=Shewanella oneidensis (strain MR-1) GN=dusC PE=3 SV=1 136 249 8.0E-06
sp|Q9HUW1|DUSB_PSEAE tRNA-dihydrouridine synthase B OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dusB PE=3 SV=1 30 274 9.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 50 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|002620
MSRRPHSPECSPRPQKKQKQDRLTSEDYKNGVFLAPMVRSGALPTRLFALKHGATMVWGPEIVDKAILHAKREVD
PVTGVVSYNGVSRAIWTTHPVEKPHLIYQIGSADPELAVQAARTVMQDVSGIDLNYLLCSILTALRKAMPEQISV
SAKIRLLPSQEDTLKLVERICGTGICALTVHCRTRNMRDKERAMIERLKEIVQFVEGLGKGIAVVENGDCQGWED
AKRVREVTGAHSVMIARAGEANPTCFSDEPLLDLDKTLLPSYLRLSRYLDNNWSLTKFCVTQFKGGRVNIKKAES
IKTRQMLAQAKGYESTTELVGEWTGEDEMKRIIETIESNPPRLRRLQTLECASNEELGMPLSTPAAMASVIFPSV
VSSCDEDISYTTPQNTQNPEPPSSCAPFLPNSFQSKGPLPAKSDPVTPTPTVAV*
Coding >AgabiH97|002620
ATGTCTCGTCGCCCACATTCTCCAGAGTGCTCGCCACGGCCACAAAAGAAACAGAAACAGGATCGTCTGACCTCT
GAAGATTACAAAAATGGTGTGTTTCTTGCTCCAATGGTCCGGTCTGGTGCTCTACCGACCAGGCTTTTCGCTCTC
AAGCATGGCGCAACCATGGTCTGGGGTCCGGAGATCGTTGATAAAGCTATTTTACATGCAAAACGCGAAGTAGAT
CCTGTGACCGGAGTCGTATCCTATAATGGTGTTTCTCGTGCCATCTGGACAACCCACCCTGTCGAAAAACCGCAT
CTCATTTATCAAATCGGTTCAGCCGATCCCGAATTAGCAGTACAAGCTGCTAGGACCGTGATGCAAGATGTTTCT
GGCATCGACCTAAATTACCTACTGTGTTCTATCCTTACGGCGCTGAGAAAGGCAATGCCAGAGCAAATTTCAGTG
TCTGCCAAGATTAGGCTATTACCTTCCCAGGAAGACACGCTAAAGCTAGTAGAAAGGATATGTGGGACGGGTATC
TGCGCATTGACTGTACATTGTCGGACGAGGAATATGAGGGATAAAGAGAGAGCGATGATCGAAAGGCTAAAGGAA
ATCGTGCAATTCGTGGAGGGTCTTGGCAAAGGGATTGCAGTTGTAGAGAACGGAGATTGTCAAGGATGGGAGGAT
GCCAAACGAGTGAGAGAGGTCACTGGGGCTCATTCAGTGATGATTGCTCGTGCAGGCGAGGCTAACCCGACATGT
TTCTCGGATGAACCTCTGCTCGACTTGGATAAGACGCTGCTTCCATCATATCTCAGACTATCAAGATACCTCGAC
AATAATTGGAGCCTCACAAAGTTCTGCGTTACTCAGTTCAAAGGTGGCCGCGTCAACATAAAGAAAGCCGAATCG
ATAAAAACGCGACAAATGCTTGCACAAGCAAAGGGCTATGAAAGCACTACCGAACTCGTAGGGGAGTGGACAGGT
GAAGATGAAATGAAACGGATCATTGAAACTATCGAGTCGAACCCACCGCGGTTGAGGAGGTTGCAAACTCTCGAG
TGTGCATCTAACGAAGAACTCGGCATGCCATTATCGACGCCTGCGGCCATGGCTTCTGTCATTTTCCCATCCGTC
GTTTCCTCGTGTGATGAGGACATCTCGTACACAACACCGCAGAATACACAGAATCCAGAGCCACCCAGTTCGTGT
GCACCATTCCTTCCGAACAGTTTCCAATCCAAGGGCCCACTGCCAGCCAAATCGGACCCGGTCACACCAACACCT
ACTGTAGCCGTATGA
Transcript >AgabiH97|002620
ATGTCTCGTCGCCCACATTCTCCAGAGTGCTCGCCACGGCCACAAAAGAAACAGAAACAGGATCGTCTGACCTCT
GAAGATTACAAAAATGGTGTGTTTCTTGCTCCAATGGTCCGGTCTGGTGCTCTACCGACCAGGCTTTTCGCTCTC
AAGCATGGCGCAACCATGGTCTGGGGTCCGGAGATCGTTGATAAAGCTATTTTACATGCAAAACGCGAAGTAGAT
CCTGTGACCGGAGTCGTATCCTATAATGGTGTTTCTCGTGCCATCTGGACAACCCACCCTGTCGAAAAACCGCAT
CTCATTTATCAAATCGGTTCAGCCGATCCCGAATTAGCAGTACAAGCTGCTAGGACCGTGATGCAAGATGTTTCT
GGCATCGACCTAAATTACCTACTGTGTTCTATCCTTACGGCGCTGAGAAAGGCAATGCCAGAGCAAATTTCAGTG
TCTGCCAAGATTAGGCTATTACCTTCCCAGGAAGACACGCTAAAGCTAGTAGAAAGGATATGTGGGACGGGTATC
TGCGCATTGACTGTACATTGTCGGACGAGGAATATGAGGGATAAAGAGAGAGCGATGATCGAAAGGCTAAAGGAA
ATCGTGCAATTCGTGGAGGGTCTTGGCAAAGGGATTGCAGTTGTAGAGAACGGAGATTGTCAAGGATGGGAGGAT
GCCAAACGAGTGAGAGAGGTCACTGGGGCTCATTCAGTGATGATTGCTCGTGCAGGCGAGGCTAACCCGACATGT
TTCTCGGATGAACCTCTGCTCGACTTGGATAAGACGCTGCTTCCATCATATCTCAGACTATCAAGATACCTCGAC
AATAATTGGAGCCTCACAAAGTTCTGCGTTACTCAGTTCAAAGGTGGCCGCGTCAACATAAAGAAAGCCGAATCG
ATAAAAACGCGACAAATGCTTGCACAAGCAAAGGGCTATGAAAGCACTACCGAACTCGTAGGGGAGTGGACAGGT
GAAGATGAAATGAAACGGATCATTGAAACTATCGAGTCGAACCCACCGCGGTTGAGGAGGTTGCAAACTCTCGAG
TGTGCATCTAACGAAGAACTCGGCATGCCATTATCGACGCCTGCGGCCATGGCTTCTGTCATTTTCCCATCCGTC
GTTTCCTCGTGTGATGAGGACATCTCGTACACAACACCGCAGAATACACAGAATCCAGAGCCACCCAGTTCGTGT
GCACCATTCCTTCCGAACAGTTTCCAATCCAAGGGCCCACTGCCAGCCAAATCGGACCCGGTCACACCAACACCT
ACTGTAGCCGTATGA
Gene >AgabiH97|002620
ATGTCTCGTCGCCCACATTCTCCAGAGTGCTCGCCACGGCCACAAAAGAAACAGAAACAGGATCGTCTGACCTCT
GAAGATTACAAAAATGGTGTGTTTCTTGCTCCAATGGTCCGGTCTGGTGCTCGTAAGTAGTAAGCATATCACTCA
TTGAGTCGCCATCGGTTTATCAGTCTTTAGTACCGACCAGGCTTTTCGCTCTCAAGCATGGCGCAACCATGGTCT
GGGGTCCGGAGATCGTTGATAAAGCTATTTTACATGCAAAACGCGAAGTAGATCGTACGCTCTTTCGCATTCTAC
TTCCAATGACAAGCAATAATTCGGTTCTCCAGCTGTGACCGGAGTCGTATCCTATAATGGTGTTTCTCGTGCCAT
CTGGACAACCCACCCTGTCGAAAAACCGCATCTCATTTATCAAATCGGTTCAGCCGATCCCGAATTAGCAGTACA
AGCTGCTAGGACCGTGATGCAAGATGTTTCTGGCATCGACCTAAATTGCGGGTGCCCCAAACCCTTTTCCACTCA
TGCAGGAATGGGAGCTGCTCTTTTAACGAATCCAGACCTACTGTGTTCTATCCTTACGGCGCTGAGAAAGGCAAT
GCCAGAGCAAATTTCAGTGTCTGCCAAGATTAGGCTATTACCTTCCCAGGAAGACACGCTAAAGCTAGTAGAAAG
GATATGTGGGACGGGTATCTGCGCATTGACTGTACATTGTCGGACGAGGAATATGAGGGATAAAGAGAGAGCGAT
GATCGAAAGGCTAAAGGAAATCGTGCAATTCGTGGAGGGTCTTGGCAAAGGGATTGCAGTTGTAGAGAACGGAGA
TTGTCAAGGATGGGAGGATGCCAAACGAGTGAGAGAGGTCACTGGTATATTCCTTTTTTCCTTTTGCGATGCAGG
GTTTATAAATTTTGTTGATGCTTGTGCGCAGGGGCTCATTCAGTGATGATTGCTCGTGCAGGCGAGGCTAACCCG
ACATGTTTCTCGGATGAACCTCTGCTCGACTTGGATAAGACGCTGCTTCCATCATATCTCAGACTAGTATGTGTG
TTGCACTCCAGGCTTGCAGTGGTTAACATTCTACCTCTCATCAGTCAAGATACCTCGACAATAATTGGAGCCTCA
CAAAGTTCTGCGTTACTCAGTTCAAAGGTGGCCGCGTCAACATAAAGAAAGCCGAATCGATAAAAACGCGACAAA
TGCTTGCACAAGCAAAGGGCTATGAAAGCACTACCGAACTCGTAGGGGAGTGGACAGGTGAAGATGAAATGAAAC
GGATCATTGAAACTATCGAGTCGAACCCACCGCGGTTGAGGAGGTTGCAAACTCTCGAGTGTGCATCTAACGAAG
AACTCGGCATGCCATTATCGACGCCTGCGGCCATGGCTTCTGTCATTTTCCCATCCGTCGTTTCCTCGTGTGATG
AGGACATCTCGTACACAACACCGCAGAATACACAGAATCCAGAGCCACCCAGTTCGTGTGCACCATTCCTTCCGA
ACAGTTTCCAATCCAAGGGCCCACTGCCAGCCAAATCGGACCCGGTCACACCAACACCTACTGTAGCCGTATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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