Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|002530
Gene name
Location	scaffold_1:648007..649335
Strand	-
Gene length (bp)	1328
Transcript length (bp)	915
Coding sequence length (bp)	915
Protein length (aa)	305

Overview

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF13202	EF-hand_5	EF hand	2.4E-03	103	125

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O74903\|YCS3_SCHPO	Uncharacterized calcium-binding protein C613.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC613.03 PE=3 SV=1	38	197	9.0E-19
sp\|P39931\|SS120_YEAST	Protein SSP120 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSP120 PE=1 SV=1	38	159	4.0E-06

GO

GO Term	Description	Terminal node
GO:0005509	calcium ion binding	Yes
GO:0046872	metal ion binding	No
GO:0003674	molecular_function	No
GO:0043167	ion binding	No
GO:0005488	binding	No
GO:0043169	cation binding	No

Deeploc

[Help with interpreting the results of Deeploc 2.0]

Localizations	Signals	Cytoplasm	Nucleus	Extracellular	Cell membrane	Mitochondrion	Plastid	Endoplasmic reticulum	Lysosome vacuole	Golgi apparatus	Peroxisome
Extracellular	Signal peptide	0.1303	0.0781	0.6832	0.1625	0.1239	0.0115	0.3525	0.2355	0.1454	0.0024

SignalP

SignalP signal predicted	Location	Score
Yes	1 - 20	0.999663

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID	1
Orthogroup	1818
Change Orthofinder run

Species	Protein ID
Agaricus bisporus var bisporus H39	AgabiH39\|002530
Agaricus bisporus var bisporus H97	AgabiH97\|002530 (this protein)
Rhodonia placenta FPRL280	RhoplFPRL280\|35_36

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|002530 MFTRPLASLSLLALAHYAAAHGGHGESGPKAGETMQQYAQRHMSSEHHIDSFDAPSFFQLHDLNRDGIWDRSEIE AVYGVHHVYSQKKSKDDEEHQKKADTIVDAVLRILDSNRDGVVDLKELERRGVDALPTFDHMGAEGHHYDVESEF FLHHEEEFHSTPETQTDDSYNHPEDIEHFGHHEGIEREEAEREAKFAGVSVEEILAAQRAAEEEAAKRTAAQQDI NNQQNLNAVDPNAPPARSPVIRVTPPEKQDPSVKYAGEKPHGEEWGTGDQGYKSPRDASDKLRKNLPYKYKFRRN WGDF*
Coding	>AgabiH97\|002530 ATGTTCACACGACCGCTGGCCAGCCTTTCTCTTCTCGCTCTTGCACACTATGCAGCCGCTCATGGCGGTCATGGA GAAAGTGGTCCAAAAGCTGGTGAAACTATGCAGCAATACGCACAAAGACACATGTCTTCAGAACACCATATTGAC TCCTTCGATGCACCAAGTTTCTTCCAGTTACATGACCTAAATCGGGATGGTATCTGGGACAGATCTGAAATTGAA GCAGTATATGGCGTTCACCACGTTTATTCACAAAAAAAATCCAAAGATGACGAGGAACACCAAAAGAAAGCGGAT ACAATTGTCGATGCAGTACTACGGATTCTCGACTCGAACCGTGACGGTGTGGTGGACTTGAAAGAACTGGAAAGG CGCGGAGTTGACGCTCTACCGACTTTCGACCATATGGGAGCTGAGGGCCACCACTACGATGTGGAAAGTGAATTC TTTCTTCACCATGAAGAGGAATTCCATTCAACACCCGAAACCCAAACTGACGATTCTTACAACCACCCAGAAGAC ATCGAACACTTCGGCCATCATGAAGGTATAGAGCGCGAAGAGGCTGAGCGTGAAGCCAAATTTGCTGGCGTGTCC GTCGAGGAGATTCTTGCCGCACAGAGAGCTGCCGAAGAAGAGGCAGCAAAGCGTACAGCAGCTCAACAAGACATT AATAACCAACAAAATTTGAATGCAGTCGACCCCAATGCACCTCCTGCACGATCACCCGTAATTCGTGTCACTCCT CCCGAGAAACAAGATCCCTCTGTTAAATATGCTGGCGAGAAACCACATGGAGAGGAGTGGGGTACTGGTGACCAA GGGTACAAGAGCCCTCGCGATGCAAGCGATAAACTGAGGAAGAACTTGCCTTACAAGTACAAATTCCGTAGGAAT TGGGGAGATTTCTGA
Transcript	>AgabiH97\|002530 ATGTTCACACGACCGCTGGCCAGCCTTTCTCTTCTCGCTCTTGCACACTATGCAGCCGCTCATGGCGGTCATGGA GAAAGTGGTCCAAAAGCTGGTGAAACTATGCAGCAATACGCACAAAGACACATGTCTTCAGAACACCATATTGAC TCCTTCGATGCACCAAGTTTCTTCCAGTTACATGACCTAAATCGGGATGGTATCTGGGACAGATCTGAAATTGAA GCAGTATATGGCGTTCACCACGTTTATTCACAAAAAAAATCCAAAGATGACGAGGAACACCAAAAGAAAGCGGAT ACAATTGTCGATGCAGTACTACGGATTCTCGACTCGAACCGTGACGGTGTGGTGGACTTGAAAGAACTGGAAAGG CGCGGAGTTGACGCTCTACCGACTTTCGACCATATGGGAGCTGAGGGCCACCACTACGATGTGGAAAGTGAATTC TTTCTTCACCATGAAGAGGAATTCCATTCAACACCCGAAACCCAAACTGACGATTCTTACAACCACCCAGAAGAC ATCGAACACTTCGGCCATCATGAAGGTATAGAGCGCGAAGAGGCTGAGCGTGAAGCCAAATTTGCTGGCGTGTCC GTCGAGGAGATTCTTGCCGCACAGAGAGCTGCCGAAGAAGAGGCAGCAAAGCGTACAGCAGCTCAACAAGACATT AATAACCAACAAAATTTGAATGCAGTCGACCCCAATGCACCTCCTGCACGATCACCCGTAATTCGTGTCACTCCT CCCGAGAAACAAGATCCCTCTGTTAAATATGCTGGCGAGAAACCACATGGAGAGGAGTGGGGTACTGGTGACCAA GGGTACAAGAGCCCTCGCGATGCAAGCGATAAACTGAGGAAGAACTTGCCTTACAAGTACAAATTCCGTAGGAAT TGGGGAGATTTCTGA
Gene	>AgabiH97\|002530 ATGTTCACACGACCGCTGGCCAGCCTTTCTCTTCTCGCTCTTGCACACTATGCAGCCGCTCATGGCGGTCATGGA GAAAGTGGTCCAAAAGCTGGTGAAACTATGCAGCAATACGCACAAAGACACGTAAGTTGTTAACAATTGAATCTT AGTTGGTGTGCTGACTTGTCCTTCTAGATGTCTTCAGAACACCATATGTGAGTTTAACGTAGTCATTGTGTGTTG GTATTGTGTCAATGCGTGGACCGTTGCGAACTAGTGACTCCTTCGATGCACCAAGTTTCTTCCAGTTACATGACC TAAATCGGTGAGTCAAATTCAAAATCGTCCCAGTATCAGTCACTCATCGCCCAATTCATTAAGGGATGGTATCTG GGACAGATCTGAAATTGAAGCAGTATATGGCGTTCACCACGTTTATTCACAAAAAAAATCCAAAGTATGTCCAAG GAAAGTTAATTAGCCAATAGCTTAATATTGTCGACATTGCAGGATGACGAGGAACACCAAAAGAAAGCGGATACA ATTGTCGATGCAGTACTACGGATTCTCGACTCGAACCGTGACGGTGTGGTGGACTTGAAAGAACTGGAAAGGCGC GGAGTTGACGCTCTACCGACTTTCGACCATATGGGAGCTGAGGGCCACCACTACGATGTGGAAAGTGGTATGTAA TGATTGCTTGCTTTCTTGCCTGAACACCGCTAACCAATATGCGAACAAATACAGAATTCTTTCTTCACCATGAAG GTACTCTTACCGCGTGACAATTTCCAACAAAAGTTCACTCACACACCTCTTTCCTTCTCAATTACAGAGGAATTC CATTCAACACCCGAAACCCAAACTGACGATTCTTACAACCACCCAGAAGACATCGAACACTTCGGCCATCATGAA GGTATAGAGCGCGAAGAGGCTGAGCGTGAAGCCAAATTTGCTGGCGTGTCCGTCGAGGAGATTCTTGCCGCACAG AGAGCTGCCGAAGAAGAGGCAGCAAAGCGTACAGCAGCTCAACAAGACATTAATAACCAACAAAATTTGAATGCA GTCGACCCCAATGCACCTCCTGCACGATCACCCGTAATTCGTGTCACTCCTCCCGAGAAACAAGATCCCTCTGTT AAATATGCTGGCGAGAAACCACATGGAGAGGAGTGGGGTACTGGTGACCAAGGGTACAAGAGCCCTCGCGATGCA AGCGATAAACTGAGGAAGAACTTGCCTTACAAGGTATAATTCTCTATACTATTTTCACCATGTTGCGCTGAGGGC TGATCCAGTCTCGTATGCAGTACAAATTCCGTAGGAATTGGGGAGATTTCTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail