Protein ID | AgabiH97|002480 |
Gene name | |
Location | scaffold_1:633575..634805 |
Strand | - |
Gene length (bp) | 1230 |
Transcript length (bp) | 963 |
Coding sequence length (bp) | 963 |
Protein length (aa) | 321 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF10354 | BMT5-like | rRNA (uridine-N3-)-methyltransferase BTM5-like | 1.8E-49 | 68 | 260 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O94480|BMT5_SCHPO | 25S rRNA (uridine-N(3))-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bmt5 PE=3 SV=1 | 12 | 256 | 1.0E-32 |
sp|P40493|BMT5_YEAST | 25S rRNA (uridine(2634)-N(3))-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BMT5 PE=1 SV=1 | 3 | 271 | 2.0E-23 |
sp|P0C8L4|Y4648_ARATH | Uncharacterized protein At4g26485 OS=Arabidopsis thaliana GN=At4g26485 PE=4 SV=1 | 67 | 201 | 1.0E-18 |
sp|Q3UY23|FDXA1_MOUSE | Ferredoxin-fold anticodon-binding domain-containing protein 1 homolog OS=Mus musculus GN=Fdxacb1 PE=2 SV=2 | 67 | 190 | 2.0E-13 |
sp|Q9BRP7|FDXA1_HUMAN | Ferredoxin-fold anticodon-binding domain-containing protein 1 OS=Homo sapiens GN=FDXACB1 PE=1 SV=3 | 67 | 192 | 9.0E-12 |
GO Term | Description | Terminal node |
---|---|---|
GO:0070475 | rRNA base methylation | Yes |
GO:0070042 | rRNA (uridine-N3-)-methyltransferase activity | Yes |
GO:0140098 | catalytic activity, acting on RNA | No |
GO:0090304 | nucleic acid metabolic process | No |
GO:0046483 | heterocycle metabolic process | No |
GO:0043412 | macromolecule modification | No |
GO:0008152 | metabolic process | No |
GO:0140102 | catalytic activity, acting on a rRNA | No |
GO:0006139 | nucleobase-containing compound metabolic process | No |
GO:0140640 | catalytic activity, acting on a nucleic acid | No |
GO:0008150 | biological_process | No |
GO:0071704 | organic substance metabolic process | No |
GO:0000154 | rRNA modification | No |
GO:0032259 | methylation | No |
GO:1901360 | organic cyclic compound metabolic process | No |
GO:0006396 | RNA processing | No |
GO:0031167 | rRNA methylation | No |
GO:0008168 | methyltransferase activity | No |
GO:0016070 | RNA metabolic process | No |
GO:0034470 | ncRNA processing | No |
GO:0008649 | rRNA methyltransferase activity | No |
GO:0006364 | rRNA processing | No |
GO:0016072 | rRNA metabolic process | No |
GO:0043414 | macromolecule methylation | No |
GO:0016741 | transferase activity, transferring one-carbon groups | No |
GO:0034641 | cellular nitrogen compound metabolic process | No |
GO:0044260 | cellular macromolecule metabolic process | No |
GO:0044237 | cellular metabolic process | No |
GO:0003824 | catalytic activity | No |
GO:0009987 | cellular process | No |
GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | No |
GO:0006725 | cellular aromatic compound metabolic process | No |
GO:0044238 | primary metabolic process | No |
GO:0043170 | macromolecule metabolic process | No |
GO:0008170 | N-methyltransferase activity | No |
GO:0003674 | molecular_function | No |
GO:0001510 | RNA methylation | No |
GO:0008173 | RNA methyltransferase activity | No |
GO:0016740 | transferase activity | No |
GO:0006807 | nitrogen compound metabolic process | No |
GO:0009451 | RNA modification | No |
GO:0034660 | ncRNA metabolic process | No |
GO:0016436 | rRNA (uridine) methyltransferase activity | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Nucleus | Nuclear localization signal | 0.3777 | 0.7714 | 0.0459 | 0.0275 | 0.0997 | 0.0134 | 0.0573 | 0.0053 | 0.0451 | 0.0015 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
Casing | Casing mycelium | 13.70 | 6.81 | 20.60 |
Initials | Initials knots | 13.11 | 6.44 | 19.78 |
Pileal_Stipeal_center | Stage I stipe center | 9.95 | 4.72 | 15.17 |
Pileal_Stipeal_shell | Stage I stipe shell | 13.11 | 6.44 | 19.77 |
DIF_stipe_center | Stage II stipe center | 9.04 | 4.24 | 13.85 |
DIF_stipe_shell | Stage II stipe shell | 8.52 | 3.93 | 13.12 |
DIF_stipe_skin | Stage II stipe skin | 12.79 | 6.16 | 19.42 |
DIF_cap_skin | Stage II cap skin | 11.66 | 5.57 | 17.75 |
DIF_cap_tissue | Stage II cap tissue | 12.69 | 6.12 | 19.26 |
DIF_gill_tissue | Stage II gill tissue | 15.12 | 7.58 | 22.65 |
YFB_stipe_center | Young fruiting body stipe center | 11.23 | 5.34 | 17.12 |
YFB_stipe_shell | Young fruiting body stipe shell | 8.60 | 3.94 | 13.26 |
YFB_stipe_skin | Young fruiting body stipe skin | 12.13 | 5.91 | 18.35 |
YFB_cap_skin | Young fruiting body cap skin | 10.75 | 5.17 | 16.33 |
YFB_cap_tissue | Young fruiting body cap tissue | 7.86 | 3.60 | 12.12 |
YFB_gill_tissue | Young fruiting body gill tissue | 10.08 | 4.78 | 15.37 |
YFB_veil | Young fruiting body veil | 12.15 | 5.92 | 18.38 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
Casing | DIF_gill_tissue | 0.870376 | no |
Casing | YFB_stipe_center | 0.700459 | no |
Casing | YFB_stipe_shell | 0.240931 | no |
Casing | YFB_stipe_skin | 0.837851 | no |
Casing | YFB_cap_skin | 0.609496 | no |
Casing | YFB_cap_tissue | 0.134864 | no |
Casing | YFB_gill_tissue | 0.486122 | no |
Casing | YFB_veil | 0.839383 | no |
Casing | Initials | 0.945407 | no |
Casing | Pileal_Stipeal_center | 0.458448 | no |
Casing | Pileal_Stipeal_shell | 0.948047 | no |
Casing | DIF_stipe_center | 0.313441 | no |
Casing | DIF_stipe_shell | 0.227150 | no |
Casing | DIF_stipe_skin | 0.916889 | no |
Casing | DIF_cap_skin | 0.767023 | no |
Casing | DIF_cap_tissue | 0.904184 | no |
DIF_gill_tissue | YFB_stipe_center | 0.507422 | no |
DIF_gill_tissue | YFB_stipe_shell | 0.135445 | no |
DIF_gill_tissue | YFB_stipe_skin | 0.656135 | no |
DIF_gill_tissue | YFB_cap_skin | 0.415001 | no |
DIF_gill_tissue | YFB_cap_tissue | 0.066584 | no |
DIF_gill_tissue | YFB_gill_tissue | 0.305427 | no |
DIF_gill_tissue | YFB_veil | 0.655336 | no |
YFB_stipe_center | YFB_stipe_shell | 0.594174 | no |
YFB_stipe_center | YFB_stipe_skin | 0.908793 | no |
YFB_stipe_center | YFB_cap_skin | 0.948525 | no |
YFB_stipe_center | YFB_cap_tissue | 0.420563 | no |
YFB_stipe_center | YFB_gill_tissue | 0.863102 | no |
YFB_stipe_center | YFB_veil | 0.905932 | no |
YFB_stipe_shell | YFB_stipe_skin | 0.440629 | no |
YFB_stipe_shell | YFB_cap_skin | 0.668023 | no |
YFB_stipe_shell | YFB_cap_tissue | 0.895531 | no |
YFB_stipe_shell | YFB_gill_tissue | 0.787262 | no |
YFB_stipe_shell | YFB_veil | 0.435358 | no |
YFB_stipe_skin | YFB_cap_skin | 0.840993 | no |
YFB_stipe_skin | YFB_cap_tissue | 0.296701 | no |
YFB_stipe_skin | YFB_gill_tissue | 0.732050 | no |
YFB_stipe_skin | YFB_veil | 0.997634 | no |
YFB_cap_skin | YFB_cap_tissue | 0.500609 | no |
YFB_cap_skin | YFB_gill_tissue | 0.924757 | no |
YFB_cap_skin | YFB_veil | 0.840563 | no |
YFB_cap_tissue | YFB_gill_tissue | 0.625840 | no |
YFB_cap_tissue | YFB_veil | 0.288092 | no |
YFB_gill_tissue | YFB_veil | 0.722850 | no |
Initials | DIF_gill_tissue | 0.792957 | no |
Initials | YFB_stipe_center | 0.776396 | no |
Initials | YFB_stipe_shell | 0.300496 | no |
Initials | YFB_stipe_skin | 0.902827 | no |
Initials | YFB_cap_skin | 0.692917 | no |
Initials | YFB_cap_tissue | 0.172307 | no |
Initials | YFB_gill_tissue | 0.572392 | no |
Initials | YFB_veil | 0.905761 | no |
Initials | Pileal_Stipeal_center | 0.543011 | no |
Initials | Pileal_Stipeal_shell | 0.998680 | no |
Initials | DIF_stipe_center | 0.387524 | no |
Initials | DIF_stipe_shell | 0.287100 | no |
Initials | DIF_stipe_skin | 0.971408 | no |
Initials | DIF_cap_skin | 0.840397 | no |
Initials | DIF_cap_tissue | 0.961619 | no |
Pileal_Stipeal_center | DIF_gill_tissue | 0.288793 | no |
Pileal_Stipeal_center | YFB_stipe_center | 0.842745 | no |
Pileal_Stipeal_center | YFB_stipe_shell | 0.811887 | no |
Pileal_Stipeal_center | YFB_stipe_skin | 0.710508 | no |
Pileal_Stipeal_center | YFB_cap_skin | 0.906321 | no |
Pileal_Stipeal_center | YFB_cap_tissue | 0.649031 | no |
Pileal_Stipeal_center | YFB_gill_tissue | 0.985328 | no |
Pileal_Stipeal_center | YFB_veil | 0.701274 | no |
Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.561022 | no |
Pileal_Stipeal_center | DIF_stipe_center | 0.885659 | no |
Pileal_Stipeal_center | DIF_stipe_shell | 0.793802 | no |
Pileal_Stipeal_center | DIF_stipe_skin | 0.604439 | no |
Pileal_Stipeal_center | DIF_cap_skin | 0.777280 | no |
Pileal_Stipeal_center | DIF_cap_tissue | 0.619450 | no |
Pileal_Stipeal_shell | DIF_gill_tissue | 0.801872 | no |
Pileal_Stipeal_shell | YFB_stipe_center | 0.785993 | no |
Pileal_Stipeal_shell | YFB_stipe_shell | 0.319242 | no |
Pileal_Stipeal_shell | YFB_stipe_skin | 0.906485 | no |
Pileal_Stipeal_shell | YFB_cap_skin | 0.707255 | no |
Pileal_Stipeal_shell | YFB_cap_tissue | 0.192047 | no |
Pileal_Stipeal_shell | YFB_gill_tissue | 0.588261 | no |
Pileal_Stipeal_shell | YFB_veil | 0.909322 | no |
Pileal_Stipeal_shell | DIF_stipe_center | 0.404441 | no |
Pileal_Stipeal_shell | DIF_stipe_shell | 0.304111 | no |
Pileal_Stipeal_shell | DIF_stipe_skin | 0.972836 | no |
Pileal_Stipeal_shell | DIF_cap_skin | 0.847394 | no |
Pileal_Stipeal_shell | DIF_cap_tissue | 0.963248 | no |
DIF_stipe_center | DIF_gill_tissue | 0.185461 | no |
DIF_stipe_center | YFB_stipe_center | 0.680539 | no |
DIF_stipe_center | YFB_stipe_shell | 0.945061 | no |
DIF_stipe_center | YFB_stipe_skin | 0.536319 | no |
DIF_stipe_center | YFB_cap_skin | 0.758544 | no |
DIF_stipe_center | YFB_cap_tissue | 0.820445 | no |
DIF_stipe_center | YFB_gill_tissue | 0.864757 | no |
DIF_stipe_center | YFB_veil | 0.529634 | no |
DIF_stipe_center | DIF_stipe_shell | 0.933774 | no |
DIF_stipe_center | DIF_stipe_skin | 0.441147 | no |
DIF_stipe_center | DIF_cap_skin | 0.611613 | no |
DIF_stipe_center | DIF_cap_tissue | 0.452955 | no |
DIF_stipe_shell | DIF_gill_tissue | 0.123057 | no |
DIF_stipe_shell | YFB_stipe_center | 0.568646 | no |
DIF_stipe_shell | YFB_stipe_shell | 0.990695 | no |
DIF_stipe_shell | YFB_stipe_skin | 0.423104 | no |
DIF_stipe_shell | YFB_cap_skin | 0.648885 | no |
DIF_stipe_shell | YFB_cap_tissue | 0.907292 | no |
DIF_stipe_shell | YFB_gill_tissue | 0.768731 | no |
DIF_stipe_shell | YFB_veil | 0.416901 | no |
DIF_stipe_shell | DIF_stipe_skin | 0.336508 | no |
DIF_stipe_shell | DIF_cap_skin | 0.500239 | no |
DIF_stipe_shell | DIF_cap_tissue | 0.345643 | no |
DIF_stipe_skin | DIF_gill_tissue | 0.759336 | no |
DIF_stipe_skin | YFB_stipe_center | 0.827921 | no |
DIF_stipe_skin | YFB_stipe_shell | 0.354295 | no |
DIF_stipe_skin | YFB_stipe_skin | 0.939373 | no |
DIF_stipe_skin | YFB_cap_skin | 0.751548 | no |
DIF_stipe_skin | YFB_cap_tissue | 0.218316 | no |
DIF_stipe_skin | YFB_gill_tissue | 0.634833 | no |
DIF_stipe_skin | YFB_veil | 0.940527 | no |
DIF_stipe_skin | DIF_cap_skin | 0.883387 | no |
DIF_stipe_skin | DIF_cap_tissue | 0.990559 | no |
DIF_cap_skin | DIF_gill_tissue | 0.581604 | no |
DIF_cap_skin | YFB_stipe_center | 0.957408 | no |
DIF_cap_skin | YFB_stipe_shell | 0.522533 | no |
DIF_cap_skin | YFB_stipe_skin | 0.956030 | no |
DIF_cap_skin | YFB_cap_skin | 0.900497 | no |
DIF_cap_skin | YFB_cap_tissue | 0.358057 | no |
DIF_cap_skin | YFB_gill_tissue | 0.803101 | no |
DIF_cap_skin | YFB_veil | 0.953316 | no |
DIF_cap_skin | DIF_cap_tissue | 0.894718 | no |
DIF_cap_tissue | DIF_gill_tissue | 0.746725 | no |
DIF_cap_tissue | YFB_stipe_center | 0.841964 | no |
DIF_cap_tissue | YFB_stipe_shell | 0.370496 | no |
DIF_cap_tissue | YFB_stipe_skin | 0.948481 | no |
DIF_cap_tissue | YFB_cap_skin | 0.765672 | no |
DIF_cap_tissue | YFB_cap_tissue | 0.228595 | no |
DIF_cap_tissue | YFB_gill_tissue | 0.651288 | no |
DIF_cap_tissue | YFB_veil | 0.950227 | no |
Orthofinder run ID | 1 |
Orthogroup | 3033 |
Change Orthofinder run |
Species | Protein ID |
---|---|
Agaricus bisporus var bisporus H39 | AgabiH39|002480 |
Agaricus bisporus var bisporus H97 | AgabiH97|002480 (this protein) |
Rhodonia placenta FPRL280 | RhoplFPRL280|35_30 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >AgabiH97|002480 MGKGLKAALKSQQSRLKEKEKAQKAARAADLKYKKTTTYASSAKSKAKEKVLSNQKPTIPFLPSDDILLVGEGNF SFARALAFHPPSGSGLEDLPPQNITATAYDSEEECFVKYPEAKDIVQNLRERGVEVLFNIDATKLDKISGVKGRK WDRVVWNFPHAGKGITDQDRNILSNQVLVLDFLRSAAKVLRDGLIPSIHKPKRKPVEAADESEDEGVPNPDDMNE APSNSKARGTVLITLRNVPPYTLWEVPRLAKKPPLPKTGSKFAREHTVLERLAKVVRTELGNFVFVIKSPNNNDC LDGVDEIWLTWRSPSSLMIW* |
Coding | >AgabiH97|002480 ATGGGCAAAGGCCTCAAAGCAGCGCTCAAATCTCAGCAATCCAGGCTAAAAGAGAAGGAAAAGGCTCAGAAGGCA GCTAGGGCTGCAGATCTCAAGTACAAGAAGACCACCACATATGCTTCGTCTGCGAAATCCAAAGCTAAAGAAAAA GTTCTGTCTAACCAGAAACCCACTATACCTTTCTTACCATCGGATGACATTCTTCTTGTCGGCGAAGGGAACTTT TCATTTGCGCGCGCATTAGCATTTCACCCACCTTCTGGTTCTGGACTCGAGGACCTGCCACCGCAAAATATTACC GCTACAGCGTACGATTCAGAAGAAGAATGCTTTGTTAAATATCCTGAAGCAAAAGATATCGTTCAGAACCTGCGA GAACGAGGCGTAGAAGTTCTTTTTAATATCGACGCAACGAAATTGGATAAGATTTCCGGTGTCAAGGGAAGGAAA TGGGATCGTGTTGTATGGAACTTTCCTCACGCAGGAAAAGGAATCACAGACCAGGACAGGAACATACTTTCTAAT CAAGTATTGGTCCTGGACTTCCTCCGATCAGCTGCCAAAGTGCTTAGAGACGGACTAATACCTTCAATTCACAAA CCTAAAAGGAAACCCGTTGAAGCTGCCGATGAGAGCGAAGACGAAGGTGTTCCTAACCCCGACGACATGAATGAA GCACCAAGCAACTCGAAGGCGCGAGGTACCGTCCTCATCACTTTGCGGAACGTCCCACCATACACGCTGTGGGAA GTACCGAGACTTGCAAAGAAGCCTCCATTGCCAAAGACAGGGAGCAAGTTCGCGAGAGAGCACACGGTGTTGGAA AGACTGGCGAAGGTGGTGAGGACCGAACTTGGGAATTTTGTCTTCGTGATTAAATCTCCCAATAATAATGATTGC TTGGATGGTGTAGATGAGATCTGGCTGACTTGGCGTTCACCTAGCTCATTGATGATTTGGTGA |
Transcript | >AgabiH97|002480 ATGGGCAAAGGCCTCAAAGCAGCGCTCAAATCTCAGCAATCCAGGCTAAAAGAGAAGGAAAAGGCTCAGAAGGCA GCTAGGGCTGCAGATCTCAAGTACAAGAAGACCACCACATATGCTTCGTCTGCGAAATCCAAAGCTAAAGAAAAA GTTCTGTCTAACCAGAAACCCACTATACCTTTCTTACCATCGGATGACATTCTTCTTGTCGGCGAAGGGAACTTT TCATTTGCGCGCGCATTAGCATTTCACCCACCTTCTGGTTCTGGACTCGAGGACCTGCCACCGCAAAATATTACC GCTACAGCGTACGATTCAGAAGAAGAATGCTTTGTTAAATATCCTGAAGCAAAAGATATCGTTCAGAACCTGCGA GAACGAGGCGTAGAAGTTCTTTTTAATATCGACGCAACGAAATTGGATAAGATTTCCGGTGTCAAGGGAAGGAAA TGGGATCGTGTTGTATGGAACTTTCCTCACGCAGGAAAAGGAATCACAGACCAGGACAGGAACATACTTTCTAAT CAAGTATTGGTCCTGGACTTCCTCCGATCAGCTGCCAAAGTGCTTAGAGACGGACTAATACCTTCAATTCACAAA CCTAAAAGGAAACCCGTTGAAGCTGCCGATGAGAGCGAAGACGAAGGTGTTCCTAACCCCGACGACATGAATGAA GCACCAAGCAACTCGAAGGCGCGAGGTACCGTCCTCATCACTTTGCGGAACGTCCCACCATACACGCTGTGGGAA GTACCGAGACTTGCAAAGAAGCCTCCATTGCCAAAGACAGGGAGCAAGTTCGCGAGAGAGCACACGGTGTTGGAA AGACTGGCGAAGGTGGTGAGGACCGAACTTGGGAATTTTGTCTTCGTGATTAAATCTCCCAATAATAATGATTGC TTGGATGGTGTAGATGAGATCTGGCTGACTTGGCGTTCACCTAGCTCATTGATGATTTGGTGA |
Gene | >AgabiH97|002480 ATGGGCAAAGGCCTCAAAGCAGCGCTCAAATCTCAGCAATCCAGGCTAAAAGAGAAGGAAAAGGCTCAGAAGGCA GCTAGGGCTGCAGATCTCAAGTACAAGAAGACCACCACATATGCTTCGTCTGCGAAATCCAAAGCTAAAGAAAAA GTTCTGTCTAACCAGAAACCCACTATACCTTTCTTACCATCGGATGACATTCTTCTTGTCGGCGAAGGGAACTTT TCATTTGCGCGCGCATTAGCATTTCACCCACCTTCTGGTTCTGGACTCGAGGACCTGCCACCGCAAAATATTACC GCTACAGCGTACGATTCAGAAGAAGAATGCTTTGTTAAATATCCTGAAGCAAAAGATATCGTTCAGAACCTGCGA GAACGAGGCGTAGAAGTTCTTTTTAATATCGACGCAACGAAATTGGATAAGATTTCCGGTGTCAAGGGAAGGAAA TGGGATCGTGTTGTATGGAACTTTCCTCACGCAGGTGCGCACCCACTGTCATTCCATTACCGACAAGTAATTGAG GATTTCGCGTTCTTGCAGGAAAAGGAATCACAGACCAGGACAGGAACATACTTTCTAATCAAGTATTGGTCCTGG ACTTCCTCCGATCAGCTGCCAAAGTGCTTAGAGACGGACTAATACCTTCAATTCACAAACCTAAAAGGAAACCCG TTGAAGCTGCCGATGAGAGCGAAGACGAAGGTGTTCCTAACCCCGACGACATGAATGAAGCACCAAGCAACTCGA AGGCGCGAGGTACCGTCCTCATCACTTTGCGGAACGTCCCACCATACACGCTGTGGTAATCATCTTTTCCCTATT GCCCAAATTGACACCTTATGTCTGCTGGTTATTTCACAGGGAAGTACCGAGACTTGCAAAGAAGCCTCCATTGCC AAAGACAGGGAGCAAGTTCGTAAACCCGCAGTATATTCAACTTCGTTCCTTCGCGTTCCATCGTAATGCCTGGAA AAGTTACGAACACCGAATGACTAAAGGCGAGAGAGCACACGGTGTTGGAAAGACTGGCGAAGGTGGTGAGGACCG AACTTGGGAATTTTGTCTTCGTGATTAAATCTCCCAATAATAATGATTGTATGTGCCTTCTGAGTCGTCCTTCCA AAATCACTGACTCTCGCTCCTCCCCGATTGGTCACGAAAGGCTTGGATGGTGTAGATGAGATCTGGCTGACTTGG CGTTCACCTAGCTCATTGATGATTTGGTGA |