Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|002480
Gene name
Locationscaffold_1:633575..634805
Strand-
Gene length (bp)1230
Transcript length (bp)963
Coding sequence length (bp)963
Protein length (aa) 321

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10354 BMT5-like rRNA (uridine-N3-)-methyltransferase BTM5-like 1.8E-49 68 260

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O94480|BMT5_SCHPO 25S rRNA (uridine-N(3))-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bmt5 PE=3 SV=1 12 256 1.0E-32
sp|P40493|BMT5_YEAST 25S rRNA (uridine(2634)-N(3))-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BMT5 PE=1 SV=1 3 271 2.0E-23
sp|P0C8L4|Y4648_ARATH Uncharacterized protein At4g26485 OS=Arabidopsis thaliana GN=At4g26485 PE=4 SV=1 67 201 1.0E-18
sp|Q3UY23|FDXA1_MOUSE Ferredoxin-fold anticodon-binding domain-containing protein 1 homolog OS=Mus musculus GN=Fdxacb1 PE=2 SV=2 67 190 2.0E-13
sp|Q9BRP7|FDXA1_HUMAN Ferredoxin-fold anticodon-binding domain-containing protein 1 OS=Homo sapiens GN=FDXACB1 PE=1 SV=3 67 192 9.0E-12

GO

GO Term Description Terminal node
GO:0070475 rRNA base methylation Yes
GO:0070042 rRNA (uridine-N3-)-methyltransferase activity Yes
GO:0140098 catalytic activity, acting on RNA No
GO:0090304 nucleic acid metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0043412 macromolecule modification No
GO:0008152 metabolic process No
GO:0140102 catalytic activity, acting on a rRNA No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0140640 catalytic activity, acting on a nucleic acid No
GO:0008150 biological_process No
GO:0071704 organic substance metabolic process No
GO:0000154 rRNA modification No
GO:0032259 methylation No
GO:1901360 organic cyclic compound metabolic process No
GO:0006396 RNA processing No
GO:0031167 rRNA methylation No
GO:0008168 methyltransferase activity No
GO:0016070 RNA metabolic process No
GO:0034470 ncRNA processing No
GO:0008649 rRNA methyltransferase activity No
GO:0006364 rRNA processing No
GO:0016072 rRNA metabolic process No
GO:0043414 macromolecule methylation No
GO:0016741 transferase activity, transferring one-carbon groups No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0044237 cellular metabolic process No
GO:0003824 catalytic activity No
GO:0009987 cellular process No
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity No
GO:0006725 cellular aromatic compound metabolic process No
GO:0044238 primary metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0008170 N-methyltransferase activity No
GO:0003674 molecular_function No
GO:0001510 RNA methylation No
GO:0008173 RNA methyltransferase activity No
GO:0016740 transferase activity No
GO:0006807 nitrogen compound metabolic process No
GO:0009451 RNA modification No
GO:0034660 ncRNA metabolic process No
GO:0016436 rRNA (uridine) methyltransferase activity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 37 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|002480
MGKGLKAALKSQQSRLKEKEKAQKAARAADLKYKKTTTYASSAKSKAKEKVLSNQKPTIPFLPSDDILLVGEGNF
SFARALAFHPPSGSGLEDLPPQNITATAYDSEEECFVKYPEAKDIVQNLRERGVEVLFNIDATKLDKISGVKGRK
WDRVVWNFPHAGKGITDQDRNILSNQVLVLDFLRSAAKVLRDGLIPSIHKPKRKPVEAADESEDEGVPNPDDMNE
APSNSKARGTVLITLRNVPPYTLWEVPRLAKKPPLPKTGSKFAREHTVLERLAKVVRTELGNFVFVIKSPNNNDC
LDGVDEIWLTWRSPSSLMIW*
Coding >AgabiH97|002480
ATGGGCAAAGGCCTCAAAGCAGCGCTCAAATCTCAGCAATCCAGGCTAAAAGAGAAGGAAAAGGCTCAGAAGGCA
GCTAGGGCTGCAGATCTCAAGTACAAGAAGACCACCACATATGCTTCGTCTGCGAAATCCAAAGCTAAAGAAAAA
GTTCTGTCTAACCAGAAACCCACTATACCTTTCTTACCATCGGATGACATTCTTCTTGTCGGCGAAGGGAACTTT
TCATTTGCGCGCGCATTAGCATTTCACCCACCTTCTGGTTCTGGACTCGAGGACCTGCCACCGCAAAATATTACC
GCTACAGCGTACGATTCAGAAGAAGAATGCTTTGTTAAATATCCTGAAGCAAAAGATATCGTTCAGAACCTGCGA
GAACGAGGCGTAGAAGTTCTTTTTAATATCGACGCAACGAAATTGGATAAGATTTCCGGTGTCAAGGGAAGGAAA
TGGGATCGTGTTGTATGGAACTTTCCTCACGCAGGAAAAGGAATCACAGACCAGGACAGGAACATACTTTCTAAT
CAAGTATTGGTCCTGGACTTCCTCCGATCAGCTGCCAAAGTGCTTAGAGACGGACTAATACCTTCAATTCACAAA
CCTAAAAGGAAACCCGTTGAAGCTGCCGATGAGAGCGAAGACGAAGGTGTTCCTAACCCCGACGACATGAATGAA
GCACCAAGCAACTCGAAGGCGCGAGGTACCGTCCTCATCACTTTGCGGAACGTCCCACCATACACGCTGTGGGAA
GTACCGAGACTTGCAAAGAAGCCTCCATTGCCAAAGACAGGGAGCAAGTTCGCGAGAGAGCACACGGTGTTGGAA
AGACTGGCGAAGGTGGTGAGGACCGAACTTGGGAATTTTGTCTTCGTGATTAAATCTCCCAATAATAATGATTGC
TTGGATGGTGTAGATGAGATCTGGCTGACTTGGCGTTCACCTAGCTCATTGATGATTTGGTGA
Transcript >AgabiH97|002480
ATGGGCAAAGGCCTCAAAGCAGCGCTCAAATCTCAGCAATCCAGGCTAAAAGAGAAGGAAAAGGCTCAGAAGGCA
GCTAGGGCTGCAGATCTCAAGTACAAGAAGACCACCACATATGCTTCGTCTGCGAAATCCAAAGCTAAAGAAAAA
GTTCTGTCTAACCAGAAACCCACTATACCTTTCTTACCATCGGATGACATTCTTCTTGTCGGCGAAGGGAACTTT
TCATTTGCGCGCGCATTAGCATTTCACCCACCTTCTGGTTCTGGACTCGAGGACCTGCCACCGCAAAATATTACC
GCTACAGCGTACGATTCAGAAGAAGAATGCTTTGTTAAATATCCTGAAGCAAAAGATATCGTTCAGAACCTGCGA
GAACGAGGCGTAGAAGTTCTTTTTAATATCGACGCAACGAAATTGGATAAGATTTCCGGTGTCAAGGGAAGGAAA
TGGGATCGTGTTGTATGGAACTTTCCTCACGCAGGAAAAGGAATCACAGACCAGGACAGGAACATACTTTCTAAT
CAAGTATTGGTCCTGGACTTCCTCCGATCAGCTGCCAAAGTGCTTAGAGACGGACTAATACCTTCAATTCACAAA
CCTAAAAGGAAACCCGTTGAAGCTGCCGATGAGAGCGAAGACGAAGGTGTTCCTAACCCCGACGACATGAATGAA
GCACCAAGCAACTCGAAGGCGCGAGGTACCGTCCTCATCACTTTGCGGAACGTCCCACCATACACGCTGTGGGAA
GTACCGAGACTTGCAAAGAAGCCTCCATTGCCAAAGACAGGGAGCAAGTTCGCGAGAGAGCACACGGTGTTGGAA
AGACTGGCGAAGGTGGTGAGGACCGAACTTGGGAATTTTGTCTTCGTGATTAAATCTCCCAATAATAATGATTGC
TTGGATGGTGTAGATGAGATCTGGCTGACTTGGCGTTCACCTAGCTCATTGATGATTTGGTGA
Gene >AgabiH97|002480
ATGGGCAAAGGCCTCAAAGCAGCGCTCAAATCTCAGCAATCCAGGCTAAAAGAGAAGGAAAAGGCTCAGAAGGCA
GCTAGGGCTGCAGATCTCAAGTACAAGAAGACCACCACATATGCTTCGTCTGCGAAATCCAAAGCTAAAGAAAAA
GTTCTGTCTAACCAGAAACCCACTATACCTTTCTTACCATCGGATGACATTCTTCTTGTCGGCGAAGGGAACTTT
TCATTTGCGCGCGCATTAGCATTTCACCCACCTTCTGGTTCTGGACTCGAGGACCTGCCACCGCAAAATATTACC
GCTACAGCGTACGATTCAGAAGAAGAATGCTTTGTTAAATATCCTGAAGCAAAAGATATCGTTCAGAACCTGCGA
GAACGAGGCGTAGAAGTTCTTTTTAATATCGACGCAACGAAATTGGATAAGATTTCCGGTGTCAAGGGAAGGAAA
TGGGATCGTGTTGTATGGAACTTTCCTCACGCAGGTGCGCACCCACTGTCATTCCATTACCGACAAGTAATTGAG
GATTTCGCGTTCTTGCAGGAAAAGGAATCACAGACCAGGACAGGAACATACTTTCTAATCAAGTATTGGTCCTGG
ACTTCCTCCGATCAGCTGCCAAAGTGCTTAGAGACGGACTAATACCTTCAATTCACAAACCTAAAAGGAAACCCG
TTGAAGCTGCCGATGAGAGCGAAGACGAAGGTGTTCCTAACCCCGACGACATGAATGAAGCACCAAGCAACTCGA
AGGCGCGAGGTACCGTCCTCATCACTTTGCGGAACGTCCCACCATACACGCTGTGGTAATCATCTTTTCCCTATT
GCCCAAATTGACACCTTATGTCTGCTGGTTATTTCACAGGGAAGTACCGAGACTTGCAAAGAAGCCTCCATTGCC
AAAGACAGGGAGCAAGTTCGTAAACCCGCAGTATATTCAACTTCGTTCCTTCGCGTTCCATCGTAATGCCTGGAA
AAGTTACGAACACCGAATGACTAAAGGCGAGAGAGCACACGGTGTTGGAAAGACTGGCGAAGGTGGTGAGGACCG
AACTTGGGAATTTTGTCTTCGTGATTAAATCTCCCAATAATAATGATTGTATGTGCCTTCTGAGTCGTCCTTCCA
AAATCACTGACTCTCGCTCCTCCCCGATTGGTCACGAAAGGCTTGGATGGTGTAGATGAGATCTGGCTGACTTGG
CGTTCACCTAGCTCATTGATGATTTGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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