Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|002180
Gene name
Locationscaffold_1:547334..549206
Strand-
Gene length (bp)1872
Transcript length (bp)1212
Coding sequence length (bp)1212
Protein length (aa) 404

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00092 VWA von Willebrand factor type A domain 5.3E-09 164 317

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 67 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 781.68 337.14 1226.22
Initials Initials knots 247.48 143.34 351.63
Pileal_Stipeal_center Stage I stipe center 390.19 195.55 584.82
Pileal_Stipeal_shell Stage I stipe shell 69.73 39.20 100.26
DIF_stipe_center Stage II stipe center 258.46 147.85 369.08
DIF_stipe_shell Stage II stipe shell 786.38 382.24 1190.53
DIF_stipe_skin Stage II stipe skin 804.97 385.20 1224.74
DIF_cap_skin Stage II cap skin 67.42 38.66 96.18
DIF_cap_tissue Stage II cap tissue 47.84 27.95 67.72
DIF_gill_tissue Stage II gill tissue 34.35 18.94 49.75
YFB_stipe_center Young fruiting body stipe center 181.25 87.60 274.89
YFB_stipe_shell Young fruiting body stipe shell 484.55 256.17 712.94
YFB_stipe_skin Young fruiting body stipe skin 2271.82 723.53 3820.10
YFB_cap_skin Young fruiting body cap skin 74.47 44.59 104.35
YFB_cap_tissue Young fruiting body cap tissue 16.33 8.15 24.51
YFB_gill_tissue Young fruiting body gill tissue 116.15 63.76 168.53
YFB_veil Young fruiting body veil 72.34 37.39 107.29

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.000613 yes
Casing YFB_stipe_center 0.000613 yes
Casing YFB_stipe_shell 0.210433 no
Casing YFB_stipe_skin 0.010093 yes
Casing YFB_cap_skin 0.000613 yes
Casing YFB_cap_tissue 0.000613 yes
Casing YFB_gill_tissue 0.000613 yes
Casing YFB_veil 0.000613 yes
Casing Initials 0.000613 yes
Casing Pileal_Stipeal_center 0.053565 no
Casing Pileal_Stipeal_shell 0.000613 yes
Casing DIF_stipe_center 0.000613 yes
Casing DIF_stipe_shell 0.992616 no
Casing DIF_stipe_skin 0.967995 no
Casing DIF_cap_skin 0.000613 yes
Casing DIF_cap_tissue 0.000613 yes
DIF_gill_tissue YFB_stipe_center 0.000613 yes
DIF_gill_tissue YFB_stipe_shell 0.000613 yes
DIF_gill_tissue YFB_stipe_skin 0.000613 yes
DIF_gill_tissue YFB_cap_skin 0.006032 yes
DIF_gill_tissue YFB_cap_tissue 0.015529 yes
DIF_gill_tissue YFB_gill_tissue 0.000613 yes
DIF_gill_tissue YFB_veil 0.015529 yes
YFB_stipe_center YFB_stipe_shell 0.002525 yes
YFB_stipe_center YFB_stipe_skin 0.000613 yes
YFB_stipe_center YFB_cap_skin 0.005671 yes
YFB_stipe_center YFB_cap_tissue 0.000613 yes
YFB_stipe_center YFB_gill_tissue 0.208798 no
YFB_stipe_center YFB_veil 0.004928 yes
YFB_stipe_shell YFB_stipe_skin 0.000613 yes
YFB_stipe_shell YFB_cap_skin 0.000613 yes
YFB_stipe_shell YFB_cap_tissue 0.000613 yes
YFB_stipe_shell YFB_gill_tissue 0.000613 yes
YFB_stipe_shell YFB_veil 0.000613 yes
YFB_stipe_skin YFB_cap_skin 0.000613 yes
YFB_stipe_skin YFB_cap_tissue 0.000613 yes
YFB_stipe_skin YFB_gill_tissue 0.000613 yes
YFB_stipe_skin YFB_veil 0.000613 yes
YFB_cap_skin YFB_cap_tissue 0.000613 yes
YFB_cap_skin YFB_gill_tissue 0.132420 no
YFB_cap_skin YFB_veil 0.960319 no
YFB_cap_tissue YFB_gill_tissue 0.000613 yes
YFB_cap_tissue YFB_veil 0.000613 yes
YFB_gill_tissue YFB_veil 0.158357 no
Initials DIF_gill_tissue 0.000613 yes
Initials YFB_stipe_center 0.419933 no
Initials YFB_stipe_shell 0.017783 yes
Initials YFB_stipe_skin 0.000613 yes
Initials YFB_cap_skin 0.000613 yes
Initials YFB_cap_tissue 0.000613 yes
Initials YFB_gill_tissue 0.006032 yes
Initials YFB_veil 0.000613 yes
Initials Pileal_Stipeal_center 0.166316 no
Initials Pileal_Stipeal_shell 0.000613 yes
Initials DIF_stipe_center 0.938467 no
Initials DIF_stipe_shell 0.000613 yes
Initials DIF_stipe_skin 0.000613 yes
Initials DIF_cap_skin 0.000613 yes
Initials DIF_cap_tissue 0.000613 yes
Pileal_Stipeal_center DIF_gill_tissue 0.000613 yes
Pileal_Stipeal_center YFB_stipe_center 0.016949 yes
Pileal_Stipeal_center YFB_stipe_shell 0.629826 no
Pileal_Stipeal_center YFB_stipe_skin 0.000613 yes
Pileal_Stipeal_center YFB_cap_skin 0.000613 yes
Pileal_Stipeal_center YFB_cap_tissue 0.000613 yes
Pileal_Stipeal_center YFB_gill_tissue 0.000613 yes
Pileal_Stipeal_center YFB_veil 0.000613 yes
Pileal_Stipeal_center Pileal_Stipeal_shell 0.000613 yes
Pileal_Stipeal_center DIF_stipe_center 0.235278 no
Pileal_Stipeal_center DIF_stipe_shell 0.029164 yes
Pileal_Stipeal_center DIF_stipe_skin 0.028675 yes
Pileal_Stipeal_center DIF_cap_skin 0.000613 yes
Pileal_Stipeal_center DIF_cap_tissue 0.000613 yes
Pileal_Stipeal_shell DIF_gill_tissue 0.012880 yes
Pileal_Stipeal_shell YFB_stipe_center 0.002084 yes
Pileal_Stipeal_shell YFB_stipe_shell 0.000613 yes
Pileal_Stipeal_shell YFB_stipe_skin 0.000613 yes
Pileal_Stipeal_shell YFB_cap_skin 0.898441 no
Pileal_Stipeal_shell YFB_cap_tissue 0.000613 yes
Pileal_Stipeal_shell YFB_gill_tissue 0.092165 no
Pileal_Stipeal_shell YFB_veil 0.952144 no
Pileal_Stipeal_shell DIF_stipe_center 0.000613 yes
Pileal_Stipeal_shell DIF_stipe_shell 0.000613 yes
Pileal_Stipeal_shell DIF_stipe_skin 0.000613 yes
Pileal_Stipeal_shell DIF_cap_skin 0.953884 no
Pileal_Stipeal_shell DIF_cap_tissue 0.240720 no
DIF_stipe_center DIF_gill_tissue 0.000613 yes
DIF_stipe_center YFB_stipe_center 0.347312 no
DIF_stipe_center YFB_stipe_shell 0.030610 yes
DIF_stipe_center YFB_stipe_skin 0.000613 yes
DIF_stipe_center YFB_cap_skin 0.000613 yes
DIF_stipe_center YFB_cap_tissue 0.000613 yes
DIF_stipe_center YFB_gill_tissue 0.004160 yes
DIF_stipe_center YFB_veil 0.000613 yes
DIF_stipe_center DIF_stipe_shell 0.000613 yes
DIF_stipe_center DIF_stipe_skin 0.000613 yes
DIF_stipe_center DIF_cap_skin 0.000613 yes
DIF_stipe_center DIF_cap_tissue 0.000613 yes
DIF_stipe_shell DIF_gill_tissue 0.000613 yes
DIF_stipe_shell YFB_stipe_center 0.000613 yes
DIF_stipe_shell YFB_stipe_shell 0.160388 no
DIF_stipe_shell YFB_stipe_skin 0.009446 yes
DIF_stipe_shell YFB_cap_skin 0.000613 yes
DIF_stipe_shell YFB_cap_tissue 0.000613 yes
DIF_stipe_shell YFB_gill_tissue 0.000613 yes
DIF_stipe_shell YFB_veil 0.000613 yes
DIF_stipe_shell DIF_stipe_skin 0.972633 no
DIF_stipe_shell DIF_cap_skin 0.000613 yes
DIF_stipe_shell DIF_cap_tissue 0.000613 yes
DIF_stipe_skin DIF_gill_tissue 0.000613 yes
DIF_stipe_skin YFB_stipe_center 0.000613 yes
DIF_stipe_skin YFB_stipe_shell 0.148512 no
DIF_stipe_skin YFB_stipe_skin 0.010728 yes
DIF_stipe_skin YFB_cap_skin 0.000613 yes
DIF_stipe_skin YFB_cap_tissue 0.000613 yes
DIF_stipe_skin YFB_gill_tissue 0.000613 yes
DIF_stipe_skin YFB_veil 0.000613 yes
DIF_stipe_skin DIF_cap_skin 0.000613 yes
DIF_stipe_skin DIF_cap_tissue 0.000613 yes
DIF_cap_skin DIF_gill_tissue 0.016386 yes
DIF_cap_skin YFB_stipe_center 0.001625 yes
DIF_cap_skin YFB_stipe_shell 0.000613 yes
DIF_cap_skin YFB_stipe_skin 0.000613 yes
DIF_cap_skin YFB_cap_skin 0.836185 no
DIF_cap_skin YFB_cap_tissue 0.000613 yes
DIF_cap_skin YFB_gill_tissue 0.065086 no
DIF_cap_skin YFB_veil 0.901993 no
DIF_cap_skin DIF_cap_tissue 0.290161 no
DIF_cap_tissue DIF_gill_tissue 0.337127 no
DIF_cap_tissue YFB_stipe_center 0.000613 yes
DIF_cap_tissue YFB_stipe_shell 0.000613 yes
DIF_cap_tissue YFB_stipe_skin 0.000613 yes
DIF_cap_tissue YFB_cap_skin 0.116868 no
DIF_cap_tissue YFB_cap_tissue 0.000613 yes
DIF_cap_tissue YFB_gill_tissue 0.000613 yes
DIF_cap_tissue YFB_veil 0.224134 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|002180
MAAFNLTETIYGVDRKPRSIQQWEEISYSNTQKVTQMGCQSPVAWVLIHGKNIPPNAIVAGEDKRRPLYIARTFW
EGGVRIGEAGSHFEKGASFAYNGKEIHVETYEVLVPLQQTVKYHIAGNYSIPSIPRISQAAPMRPPLTTDGSSDY
QTAQLVQKLRAVKVVMVIDDSISMAGSLWRQARLALTGLVSTIETDFNANGIDLCFLNNPTFESNIKSHHRVESL
FDSVRPEGSTPTGSKLQELFNLYLPLVEDPMRGTPPTVIMVITDGVPTDTVDKVIVDAARRLDDNNVPLRRFGVS
FVQIGDDPDAAEYLKELDDDIGTKFTCRDMVDTTPYDPAIPELTREAFIKCVLGSIDPYYDQARSPAELFRPQSQ
NSYYQPRPSPGYPMPPSFAHAPMMPRAN*
Coding >AgabiH97|002180
ATGGCTGCATTCAACCTCACCGAGACGATTTACGGAGTTGACAGGAAGCCACGCTCCATTCAACAATGGGAGGAG
ATATCCTACTCAAACACCCAGAAGGTTACCCAGATGGGATGCCAGTCGCCTGTGGCATGGGTTCTCATCCACGGC
AAGAACATACCTCCCAACGCTATCGTAGCCGGCGAGGATAAGAGGCGACCTTTATATATCGCCAGGACTTTTTGG
GAGGGTGGAGTCCGTATCGGGGAAGCTGGATCACATTTCGAAAAGGGCGCTTCATTTGCCTACAACGGCAAAGAA
ATACACGTTGAAACTTATGAAGTTTTGGTTCCGCTCCAACAAACCGTCAAATATCACATTGCTGGAAATTATAGC
ATCCCTAGCATCCCTCGTATTTCTCAAGCTGCTCCCATGCGGCCTCCTCTAACCACCGATGGATCATCTGATTAT
CAAACCGCTCAACTCGTACAGAAATTGCGGGCTGTCAAAGTTGTAATGGTTATTGACGATTCTATTTCGATGGCC
GGTAGCCTTTGGCGCCAAGCTCGATTGGCACTGACCGGACTTGTCTCTACCATCGAAACCGATTTCAATGCCAAC
GGGATTGATCTCTGCTTCCTGAACAATCCTACATTCGAGAGTAACATCAAAAGTCATCACAGGGTTGAGAGTCTT
TTCGATAGTGTCCGTCCAGAAGGATCAACACCCACTGGCTCTAAACTCCAAGAGCTTTTCAATTTGTATCTCCCC
TTGGTCGAGGATCCGATGAGAGGCACTCCTCCAACCGTCATAATGGTCATTACGGACGGCGTTCCAACCGATACA
GTGGACAAAGTTATTGTCGATGCCGCTCGTCGCCTAGATGATAACAATGTTCCGCTCCGCCGCTTCGGGGTGTCA
TTCGTTCAGATTGGCGACGACCCAGATGCTGCTGAATATTTGAAGGAGTTGGATGATGATATCGGCACTAAATTT
ACCTGCAGAGACATGGTTGACACTACGCCTTATGATCCGGCCATACCAGAGCTTACTCGAGAAGCCTTCATCAAA
TGTGTCCTGGGATCCATCGATCCTTACTACGATCAGGCTCGCAGCCCGGCTGAGTTATTCCGTCCTCAATCGCAA
AACAGTTACTATCAGCCACGACCATCCCCTGGTTACCCCATGCCACCGTCGTTTGCACATGCCCCGATGATGCCC
CGAGCGAATTAG
Transcript >AgabiH97|002180
ATGGCTGCATTCAACCTCACCGAGACGATTTACGGAGTTGACAGGAAGCCACGCTCCATTCAACAATGGGAGGAG
ATATCCTACTCAAACACCCAGAAGGTTACCCAGATGGGATGCCAGTCGCCTGTGGCATGGGTTCTCATCCACGGC
AAGAACATACCTCCCAACGCTATCGTAGCCGGCGAGGATAAGAGGCGACCTTTATATATCGCCAGGACTTTTTGG
GAGGGTGGAGTCCGTATCGGGGAAGCTGGATCACATTTCGAAAAGGGCGCTTCATTTGCCTACAACGGCAAAGAA
ATACACGTTGAAACTTATGAAGTTTTGGTTCCGCTCCAACAAACCGTCAAATATCACATTGCTGGAAATTATAGC
ATCCCTAGCATCCCTCGTATTTCTCAAGCTGCTCCCATGCGGCCTCCTCTAACCACCGATGGATCATCTGATTAT
CAAACCGCTCAACTCGTACAGAAATTGCGGGCTGTCAAAGTTGTAATGGTTATTGACGATTCTATTTCGATGGCC
GGTAGCCTTTGGCGCCAAGCTCGATTGGCACTGACCGGACTTGTCTCTACCATCGAAACCGATTTCAATGCCAAC
GGGATTGATCTCTGCTTCCTGAACAATCCTACATTCGAGAGTAACATCAAAAGTCATCACAGGGTTGAGAGTCTT
TTCGATAGTGTCCGTCCAGAAGGATCAACACCCACTGGCTCTAAACTCCAAGAGCTTTTCAATTTGTATCTCCCC
TTGGTCGAGGATCCGATGAGAGGCACTCCTCCAACCGTCATAATGGTCATTACGGACGGCGTTCCAACCGATACA
GTGGACAAAGTTATTGTCGATGCCGCTCGTCGCCTAGATGATAACAATGTTCCGCTCCGCCGCTTCGGGGTGTCA
TTCGTTCAGATTGGCGACGACCCAGATGCTGCTGAATATTTGAAGGAGTTGGATGATGATATCGGCACTAAATTT
ACCTGCAGAGACATGGTTGACACTACGCCTTATGATCCGGCCATACCAGAGCTTACTCGAGAAGCCTTCATCAAA
TGTGTCCTGGGATCCATCGATCCTTACTACGATCAGGCTCGCAGCCCGGCTGAGTTATTCCGTCCTCAATCGCAA
AACAGTTACTATCAGCCACGACCATCCCCTGGTTACCCCATGCCACCGTCGTTTGCACATGCCCCGATGATGCCC
CGAGCGAATTAG
Gene >AgabiH97|002180
ATGGCTGCATTCAACCTCACCGAGACGATTTACGGAGTTGACAGGAAGCCACGCTCCATTCAACAATGGGAGGAG
ATATCCTACTCAAACACCCAGAAGGTTACCCAGATGGGATGCCAGTCGCCTGTGGCATGGGTTAGTCGAAGCGGT
TGTCAACTGTGCAAGAACACTCATATGTCTTTGAAGGTTCTCATCCACGGCAAGAACATACCTCCCAACGCTATC
GTAGCCGGCGAGGATAAGAGGCGACCTTTATATATCGCCAGGACTTTTTGGGAGGTAGGCAAATCTCTTATTCAT
GATACGTCGGATGCTCACCAGTAACCTTGCGGATGTCAAGGGTGGAGTCCGTAAGTTATCCATCAGTGGGGCGCA
TGATTTCAGGCCTGACTGACGACTCCCGCTCTTTTCAGGTATCGGGGAAGCTGGATCACATTTCGAAAAGGGCGC
TTCATTTGCCTACAACGGCAAAGAAATACACGTAAGTACGAGAAACTCGAACAACGATCGAAGGGTTTGACTCAA
CGATACGGGGTGTTCAGGTTGAAACTTATGAAGTTTTGGTTCCGCTCCAACAAACCGTCAAATATCACATTGCTG
GAAATTATAGCATCCCTAGCATCCCTCGTATTTCTCAAGCTGCTCCCATGCGGCCTCCTCTAACCACCGATGGAT
CATCTGATTATCAAACCGCTCAACTCGTACAGAAATTGCGGTGGGTTTCGCCTCCTTTCACGAAGATAGTGGACA
TTTACTGACGCGCCATTGTTTTTTTTTTTTCTTAAAAAAAAAATAGGGCTGTCAAAGTTGTAATGGTTATTGACG
ATTCTATTTCGGTAAAGATGATTTATTTCATATGAAGCAACGAGCCCTCTAAGTCGTAAACATTCATAGATGGCC
GGTAGCCTTTGGCGCCAAGCTCGATTGGTGAGCGTTTTGACGCATAAAGAAGGGCTACACCAACACTCATCGTTC
AAAAGGCACTGACCGGACTTGTCTCTACCATCGAAACCGATTTCAATGCCAACGGGATTGATCTCTGCTTCCTGA
ACAATCCTACATTCGAGAGTAACATCAAAGTGAGAATGACATAATTGCGTTGATTGATCAGAGGCGGTATGAACA
TCTTTATAGAGTCATCACAGGGTTGAGAGTCTTTTCGATAGTGTCCGTCCAGAAGGTAGGCCCGAGGCGGGTGGC
GAATAACCGTGGTGGTGTTTTGATTTGACAATTGTTCCAGGATCAACACCCACTGGCTCTAAACTCCAAGAGCTT
TTCAATTTGTATCTCCCCTTGGTCGAGGATCCGATGAGAGGCACTCCTCCAACCGTCATAATGGTCATTACGGAC
GGCGTTCCAAGTAAGCAGCTTGAAATTTCAGATTGAATCAAGAATTTGACAATTTATACGTCTAGCCGATACAGT
GGACAAAGTTATTGTCGATGCCGCTCGTCGCCTAGATGATAACAATGTTCCGCTCCGCCGCTTCGGGGTGTCATT
CGTTCAGATTGGCGACGACCCAGATGCTGCTGAATATTTGAAGGAGTTGGATGATGATATCGGCACTAAATTTAC
CTGCAGAGTAAGTGTAGTCTCGCATCTGTCAATAATCACCCAGCCATCCTGACACGTGGGGACTATCAGGACATG
GTTGACACTACGCCTTATGATCCGGCCATACCAGAGCTTACTCGAGAAGCCTTCATCAAATGTGTCCTGGGATCC
ATCGATCCTTACTACGATCAGGCTCGCAGCCCGGCTGAGTTATTCCGTCCTCAATCGCAAAACAGTTACTATCAG
CCACGACCATCCCCTGGTTACCCCATGCCACCGTCGTTTGCACATGCCCCGATGATGCCCCGAGCGAATTAG

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