Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|001830
Gene name
Locationscaffold_1:467706..468953
Strand+
Gene length (bp)1247
Transcript length (bp)897
Coding sequence length (bp)897
Protein length (aa) 299

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01764 Lipase_3 Lipase (class 3) 2.3E-22 104 239

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P19515|LIP_RHIMI Lipase OS=Rhizomucor miehei PE=1 SV=2 5 256 5.0E-16
sp|P61872|LIP_RHIOR Lipase OS=Rhizopus oryzae PE=1 SV=1 29 253 6.0E-15
sp|P61871|LIP_RHINI Lipase OS=Rhizopus niveus PE=1 SV=1 29 253 6.0E-15
sp|O59952|LIP_THELA Lipase OS=Thermomyces lanuginosus GN=LIP PE=1 SV=1 19 253 5.0E-14
sp|P61869|MDLA_PENCY Mono- and diacylglycerol lipase OS=Penicillium cyclopium GN=mdlA PE=3 SV=1 6 283 2.0E-11
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Swissprot ID Swissprot Description Start End E-value
sp|P19515|LIP_RHIMI Lipase OS=Rhizomucor miehei PE=1 SV=2 5 256 5.0E-16
sp|P61872|LIP_RHIOR Lipase OS=Rhizopus oryzae PE=1 SV=1 29 253 6.0E-15
sp|P61871|LIP_RHINI Lipase OS=Rhizopus niveus PE=1 SV=1 29 253 6.0E-15
sp|O59952|LIP_THELA Lipase OS=Thermomyces lanuginosus GN=LIP PE=1 SV=1 19 253 5.0E-14
sp|P61869|MDLA_PENCY Mono- and diacylglycerol lipase OS=Penicillium cyclopium GN=mdlA PE=3 SV=1 6 283 2.0E-11
sp|P61870|MDLA_PENCA Mono- and diacylglycerol lipase OS=Penicillium camembertii GN=mdlA PE=1 SV=1 6 283 2.0E-11
sp|Q0CBM7|FAEA_ASPTN Probable feruloyl esterase A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=faeA PE=3 SV=1 135 249 4.0E-08
sp|Q9P979|FAEA_ASPAW Feruloyl esterase A OS=Aspergillus awamori GN=faeA PE=1 SV=3 138 249 6.0E-08
sp|A2QSY5|FAEA_ASPNC Probable feruloyl esterase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=faeA PE=3 SV=1 138 249 1.0E-07
sp|B8A8C9|PLA5_ORYSI Phospholipase A1-II 5 OS=Oryza sativa subsp. indica GN=OsI_03470 PE=3 SV=1 154 256 2.0E-07
sp|O42807|FAEA_ASPNG Feruloyl esterase A OS=Aspergillus niger GN=faeA PE=1 SV=1 138 249 2.0E-07
sp|Q5NAI4|PLA5_ORYSJ Phospholipase A1-II 5 OS=Oryza sativa subsp. japonica GN=Os01g0710700 PE=2 SV=1 154 256 4.0E-07
sp|A2ZW16|PLA1_ORYSJ Phospholipase A1-II 1 OS=Oryza sativa subsp. japonica GN=Os01g0651100 PE=3 SV=2 131 264 7.0E-07
sp|A2WT95|PLA1_ORYSI Phospholipase A1-II 1 OS=Oryza sativa subsp. indica GN=OsI_03083 PE=3 SV=2 131 264 7.0E-07
sp|B8NIB8|FAEA_ASPFN Probable feruloyl esterase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=faeA PE=3 SV=2 5 249 1.0E-06
sp|Q9SJI7|PLA20_ARATH Phospholipase A1-IIdelta OS=Arabidopsis thaliana GN=At2g42690 PE=1 SV=1 152 243 2.0E-06
sp|Q2UNW5|FAEA_ASPOR Probable feruloyl esterase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=faeA PE=3 SV=1 121 249 3.0E-06
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GO

GO Term Description Terminal node
GO:0006629 lipid metabolic process Yes
GO:0008152 metabolic process No
GO:0008150 biological_process No
GO:0071704 organic substance metabolic process No
GO:0044238 primary metabolic process No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.0583 0.0434 0.9256 0.101 0.0557 0.008 0.2068 0.1997 0.1119 0.0033

SignalP

SignalP signal predicted Location Score
Yes 1 - 27 0.999742

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 9.34 4.18 14.51
Initials Initials knots 12.20 5.75 18.65
Pileal_Stipeal_center Stage I stipe center 7.33 3.10 11.57
Pileal_Stipeal_shell Stage I stipe shell 9.85 4.49 15.22
DIF_stipe_center Stage II stipe center 4.78 1.86 7.70
DIF_stipe_shell Stage II stipe shell 6.05 2.53 9.57
DIF_stipe_skin Stage II stipe skin 8.40 3.72 13.09
DIF_cap_skin Stage II cap skin 9.56 4.31 14.80
DIF_cap_tissue Stage II cap tissue 6.96 2.99 10.93
DIF_gill_tissue Stage II gill tissue 7.10 2.96 11.23
YFB_stipe_center Young fruiting body stipe center 6.79 2.90 10.69
YFB_stipe_shell Young fruiting body stipe shell 7.03 3.04 11.01
YFB_stipe_skin Young fruiting body stipe skin 7.61 3.28 11.93
YFB_cap_skin Young fruiting body cap skin 8.15 3.55 12.74
YFB_cap_tissue Young fruiting body cap tissue 4.60 1.83 7.37
YFB_gill_tissue Young fruiting body gill tissue 11.79 5.39 18.19
YFB_veil Young fruiting body veil 9.44 4.28 14.60

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.597089 no
Casing YFB_stipe_center 0.516246 no
Casing YFB_stipe_shell 0.578239 no
Casing YFB_stipe_skin 0.724119 no
Casing YFB_cap_skin 0.831418 no
Casing YFB_cap_tissue 0.075734 no
Casing YFB_gill_tissue 0.660228 no
Casing YFB_veil 0.987653 no
Casing Initials 0.586866 no
Casing Pileal_Stipeal_center 0.650250 no
Casing Pileal_Stipeal_shell 0.941443 no
Casing DIF_stipe_center 0.095478 no
Casing DIF_stipe_shell 0.323698 no
Casing DIF_stipe_skin 0.873422 no
Casing DIF_cap_skin 0.975035 no
Casing DIF_cap_tissue 0.565460 no
DIF_gill_tissue YFB_stipe_center 0.955599 no
DIF_gill_tissue YFB_stipe_shell 0.988684 no
DIF_gill_tissue YFB_stipe_skin 0.927267 no
DIF_gill_tissue YFB_cap_skin 0.836615 no
DIF_gill_tissue YFB_cap_tissue 0.362644 no
DIF_gill_tissue YFB_gill_tissue 0.225481 no
DIF_gill_tissue YFB_veil 0.579205 no
YFB_stipe_center YFB_stipe_shell 0.965513 no
YFB_stipe_center YFB_stipe_skin 0.873137 no
YFB_stipe_center YFB_cap_skin 0.769159 no
YFB_stipe_center YFB_cap_tissue 0.427639 no
YFB_stipe_center YFB_gill_tissue 0.175019 no
YFB_stipe_center YFB_veil 0.503143 no
YFB_stipe_shell YFB_stipe_skin 0.914103 no
YFB_stipe_shell YFB_cap_skin 0.819976 no
YFB_stipe_shell YFB_cap_tissue 0.373669 no
YFB_stipe_shell YFB_gill_tissue 0.211699 no
YFB_stipe_shell YFB_veil 0.559940 no
YFB_stipe_skin YFB_cap_skin 0.928176 no
YFB_stipe_skin YFB_cap_tissue 0.269061 no
YFB_stipe_skin YFB_gill_tissue 0.318332 no
YFB_stipe_skin YFB_veil 0.705912 no
YFB_cap_skin YFB_cap_tissue 0.186551 no
YFB_cap_skin YFB_gill_tissue 0.424877 no
YFB_cap_skin YFB_veil 0.816937 no
YFB_cap_tissue YFB_gill_tissue 0.015242 yes
YFB_cap_tissue YFB_veil 0.071968 no
YFB_gill_tissue YFB_veil 0.679017 no
Initials DIF_gill_tissue 0.167754 no
Initials YFB_stipe_center 0.129965 no
Initials YFB_stipe_shell 0.169839 no
Initials YFB_stipe_skin 0.259041 no
Initials YFB_cap_skin 0.361281 no
Initials YFB_cap_tissue 0.009123 yes
Initials YFB_gill_tissue 0.963551 no
Initials YFB_veil 0.606119 no
Initials Pileal_Stipeal_center 0.207399 no
Initials Pileal_Stipeal_shell 0.687252 no
Initials DIF_stipe_center 0.009123 yes
Initials DIF_stipe_shell 0.059318 no
Initials DIF_stipe_skin 0.389779 no
Initials DIF_cap_skin 0.621820 no
Initials DIF_cap_tissue 0.154113 no
Pileal_Stipeal_center DIF_gill_tissue 0.966374 no
Pileal_Stipeal_center YFB_stipe_center 0.918949 no
Pileal_Stipeal_center YFB_stipe_shell 0.956114 no
Pileal_Stipeal_center YFB_stipe_skin 0.961986 no
Pileal_Stipeal_center YFB_cap_skin 0.881060 no
Pileal_Stipeal_center YFB_cap_tissue 0.312500 no
Pileal_Stipeal_center YFB_gill_tissue 0.257979 no
Pileal_Stipeal_center YFB_veil 0.641676 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.558044 no
Pileal_Stipeal_center DIF_stipe_center 0.366232 no
Pileal_Stipeal_center DIF_stipe_shell 0.748637 no
Pileal_Stipeal_center DIF_stipe_skin 0.832369 no
Pileal_Stipeal_center DIF_cap_skin 0.608401 no
Pileal_Stipeal_center DIF_cap_tissue 0.945713 no
Pileal_Stipeal_shell DIF_gill_tissue 0.498178 no
Pileal_Stipeal_shell YFB_stipe_center 0.427487 no
Pileal_Stipeal_shell YFB_stipe_shell 0.483701 no
Pileal_Stipeal_shell YFB_stipe_skin 0.625258 no
Pileal_Stipeal_shell YFB_cap_skin 0.746896 no
Pileal_Stipeal_shell YFB_cap_tissue 0.048626 yes
Pileal_Stipeal_shell YFB_gill_tissue 0.757680 no
Pileal_Stipeal_shell YFB_veil 0.953972 no
Pileal_Stipeal_shell DIF_stipe_center 0.062229 no
Pileal_Stipeal_shell DIF_stipe_shell 0.248235 no
Pileal_Stipeal_shell DIF_stipe_skin 0.791383 no
Pileal_Stipeal_shell DIF_cap_skin 0.967752 no
Pileal_Stipeal_shell DIF_cap_tissue 0.471364 no
DIF_stipe_center DIF_gill_tissue 0.410008 no
DIF_stipe_center YFB_stipe_center 0.485484 no
DIF_stipe_center YFB_stipe_shell 0.433378 no
DIF_stipe_center YFB_stipe_skin 0.312117 no
DIF_stipe_center YFB_cap_skin 0.221819 no
DIF_stipe_center YFB_cap_tissue 0.962482 no
DIF_stipe_center YFB_gill_tissue 0.019169 yes
DIF_stipe_center YFB_veil 0.083843 no
DIF_stipe_center DIF_stipe_shell 0.684340 no
DIF_stipe_center DIF_stipe_skin 0.170621 no
DIF_stipe_center DIF_cap_skin 0.081583 no
DIF_stipe_center DIF_cap_tissue 0.453160 no
DIF_stipe_shell DIF_gill_tissue 0.803312 no
DIF_stipe_shell YFB_stipe_center 0.869142 no
DIF_stipe_shell YFB_stipe_shell 0.820303 no
DIF_stipe_shell YFB_stipe_skin 0.695013 no
DIF_stipe_shell YFB_cap_skin 0.571732 no
DIF_stipe_shell YFB_cap_tissue 0.629037 no
DIF_stipe_shell YFB_gill_tissue 0.084017 no
DIF_stipe_shell YFB_veil 0.314250 no
DIF_stipe_shell DIF_stipe_skin 0.503143 no
DIF_stipe_shell DIF_cap_skin 0.290161 no
DIF_stipe_shell DIF_cap_tissue 0.834344 no
DIF_stipe_skin DIF_gill_tissue 0.779992 no
DIF_stipe_skin YFB_stipe_center 0.707211 no
DIF_stipe_skin YFB_stipe_shell 0.762726 no
DIF_stipe_skin YFB_stipe_skin 0.885833 no
DIF_stipe_skin YFB_cap_skin 0.967389 no
DIF_stipe_skin YFB_cap_tissue 0.147547 no
DIF_stipe_skin YFB_gill_tissue 0.462121 no
DIF_stipe_skin YFB_veil 0.856848 no
DIF_stipe_skin DIF_cap_skin 0.837538 no
DIF_stipe_skin DIF_cap_tissue 0.750443 no
DIF_cap_skin DIF_gill_tissue 0.555272 no
DIF_cap_skin YFB_stipe_center 0.476371 no
DIF_cap_skin YFB_stipe_shell 0.538515 no
DIF_cap_skin YFB_stipe_skin 0.683494 no
DIF_cap_skin YFB_cap_skin 0.796373 no
DIF_cap_skin YFB_cap_tissue 0.063760 no
DIF_cap_skin YFB_gill_tissue 0.703088 no
DIF_cap_skin YFB_veil 0.986284 no
DIF_cap_skin DIF_cap_tissue 0.524039 no
DIF_cap_tissue DIF_gill_tissue 0.979112 no
DIF_cap_tissue YFB_stipe_center 0.975242 no
DIF_cap_tissue YFB_stipe_shell 0.988978 no
DIF_cap_tissue YFB_stipe_skin 0.903278 no
DIF_cap_tissue YFB_cap_skin 0.807749 no
DIF_cap_tissue YFB_cap_tissue 0.389862 no
DIF_cap_tissue YFB_gill_tissue 0.200323 no
DIF_cap_tissue YFB_veil 0.546630 no

Orthologs

Orthofinder run ID1
Orthogroup106
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|000340
Agaricus bisporus var bisporus H39 AgabiH39|001820
Agaricus bisporus var bisporus H39 AgabiH39|001830
Agaricus bisporus var bisporus H39 AgabiH39|063250
Agaricus bisporus var bisporus H39 AgabiH39|090410
Agaricus bisporus var bisporus H97 AgabiH97|000340
Agaricus bisporus var bisporus H97 AgabiH97|001820
Agaricus bisporus var bisporus H97 AgabiH97|001830 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|063250
Agaricus bisporus var bisporus H97 AgabiH97|090410
Rhodonia placenta FPRL280 RhoplFPRL280|214_10
Rhodonia placenta FPRL280 RhoplFPRL280|283_4
Rhodonia placenta FPRL280 RhoplFPRL280|551_2
Rhodonia placenta FPRL280 RhoplFPRL280|551_3

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|001830
MLTSRTFLAVALAILSVGASPVQLSKRQSITALTSAQINAFTAFTHFASTAYCQPSTTSSWSCGANCNANSDFIP
TASGGNGGSVQFWYVGFSPSQGSVIVGHQGTDTSEIEALLTDAQAIQKNLDSGLFPGVPSSVEVHGGFANAQADT
ASAVLSAVRTTISRHGATRVTVVGHSLGCAIAMLDGIYLPLHISGVTFRTIGYGCPRVGNAEFANYVDSHSDFTH
INNKKDIVPILPGRFLGYAHAAGEVHISENNQWLSCPGHDNTSSQCIVGDVPNIFEGNPDDHSGPYNGITMGC*
Coding >AgabiH97|001830
ATGTTGACTTCCCGTACCTTCCTTGCGGTCGCGTTGGCTATTCTTTCTGTCGGCGCTAGTCCTGTTCAACTTTCG
AAACGACAGAGCATTACGGCCCTCACTTCTGCTCAAATCAATGCGTTTACGGCCTTCACTCATTTCGCGAGCACA
GCGTATTGCCAACCGAGTACTACTAGCTCATGGTCATGTGGAGCCAACTGTAATGCCAATTCTGATTTCATCCCA
ACGGCATCGGGTGGCAACGGAGGATCTGTACAGTTCTGGTATGTTGGGTTCTCACCTTCTCAGGGATCAGTGATT
GTGGGGCATCAAGGAACCGATACCAGCGAAATTGAGGCGCTTCTTACGGATGCTCAAGCCATCCAAAAGAATCTT
GACTCGGGACTTTTCCCCGGAGTACCTTCCTCAGTTGAAGTGCACGGCGGTTTCGCTAACGCCCAGGCTGACACT
GCATCGGCAGTTCTATCAGCTGTACGAACCACGATCTCTCGACATGGTGCAACGAGAGTTACAGTTGTTGGACAC
TCTCTGGGTTGTGCTATCGCTATGCTAGATGGCATATACCTTCCCCTTCACATCAGTGGTGTGACGTTCCGTACT
ATCGGTTATGGTTGTCCCAGGGTCGGTAACGCAGAATTCGCCAACTATGTCGACTCTCACAGCGATTTTACGCAC
ATCAATAATAAAAAGGACATTGTTCCTATTCTTCCTGGCCGATTCTTGGGCTATGCTCATGCCGCTGGCGAAGTT
CACATTTCAGAAAATAACCAATGGCTCTCTTGTCCCGGCCACGACAACACCAGCTCGCAGTGCATCGTCGGTGAT
GTCCCAAACATCTTTGAGGGTAACCCGGATGACCACAGTGGTCCTTACAATGGTATAACCATGGGCTGTTAA
Transcript >AgabiH97|001830
ATGTTGACTTCCCGTACCTTCCTTGCGGTCGCGTTGGCTATTCTTTCTGTCGGCGCTAGTCCTGTTCAACTTTCG
AAACGACAGAGCATTACGGCCCTCACTTCTGCTCAAATCAATGCGTTTACGGCCTTCACTCATTTCGCGAGCACA
GCGTATTGCCAACCGAGTACTACTAGCTCATGGTCATGTGGAGCCAACTGTAATGCCAATTCTGATTTCATCCCA
ACGGCATCGGGTGGCAACGGAGGATCTGTACAGTTCTGGTATGTTGGGTTCTCACCTTCTCAGGGATCAGTGATT
GTGGGGCATCAAGGAACCGATACCAGCGAAATTGAGGCGCTTCTTACGGATGCTCAAGCCATCCAAAAGAATCTT
GACTCGGGACTTTTCCCCGGAGTACCTTCCTCAGTTGAAGTGCACGGCGGTTTCGCTAACGCCCAGGCTGACACT
GCATCGGCAGTTCTATCAGCTGTACGAACCACGATCTCTCGACATGGTGCAACGAGAGTTACAGTTGTTGGACAC
TCTCTGGGTTGTGCTATCGCTATGCTAGATGGCATATACCTTCCCCTTCACATCAGTGGTGTGACGTTCCGTACT
ATCGGTTATGGTTGTCCCAGGGTCGGTAACGCAGAATTCGCCAACTATGTCGACTCTCACAGCGATTTTACGCAC
ATCAATAATAAAAAGGACATTGTTCCTATTCTTCCTGGCCGATTCTTGGGCTATGCTCATGCCGCTGGCGAAGTT
CACATTTCAGAAAATAACCAATGGCTCTCTTGTCCCGGCCACGACAACACCAGCTCGCAGTGCATCGTCGGTGAT
GTCCCAAACATCTTTGAGGGTAACCCGGATGACCACAGTGGTCCTTACAATGGTATAACCATGGGCTGTTAA
Gene >AgabiH97|001830
ATGTTGACTTCCCGTACCTTCCTTGCGGTCGCGTTGGCTATTCTTTCTGTCGGCGCTAGTCCTGTTCAACTTTCG
AAACGACAGAGCATTACGGCCCTCACTTCTGCTCAAATCAATGCGTTTACGGCCTTCACTCATTTCGCGAGCACA
GCGTATTGCCAACCGAGTACTACTAGCTCATGGTCATGTGGAGGTACTGTATTTCTCAAGTCGCCTAGGACAACT
TACTGACATTATTATCATTTCTTACTATCAGCCAACTGTAATGCCAATTCTGATTTCATCCCAACGGCATCGGGT
GGCAACGGAGGATCTGTACAGTTCTGTTGGTCTTTCCTGAGCGTTCTAGTATACTTTAGTTCTAAATTATCGTCC
CAGGGTATGTTGGGTTCTCACCTTCTCAGGGATCAGTGATTGTGGGGCATCAAGGAACCGATACCAGCGAAATGT
GAGTTGGAGTCTATCGAAAGCAACGTGCATAATTAACAAGTAAACTCTTTTTCTTGAAAATAGTGAGGCGCTTCT
TACGGATGCTCAAGCCATCCAAAAGAATCTTGACTCGGGACTTTTCCCCGGAGTACCTTCCTCAGTTGAAGTGCA
CGGCGGTTTCGCTAACGCCCAGGCTGAGCAAGTTCATTTTACATTATTTTCAAAGCGAGATCGCTAACCGCTAGT
CAAACCAGCACTGCATCGGCAGTTCTATCAGCTGTACGAACCACGATCTCTCGACATGGTGCAACGAGAGTTACA
GTTGTTGGACACTCTCTGGGTTGTGCTATCGCTATGCTAGATGGCATATACCTTCCCCTTCACATCAGTGGTGTG
ACGTTCCGTACTATCGGTTATGGTTGTCCCAGGGTGAGGAAATTGTTACTTCTTCCCAAGGGCTTAATGAACTTT
ATTGATATTCTATTTTTAGGTCGGTAACGCAGAATTCGCCAACTATGTCGACTCTCACAGCGATTTTACGCACAT
CAATAATAAAAAGGACATTGTTCCTATTCTTCCTGGTACGTGCACTCGTATTGCTTTCGAATATACTCGAGCTGA
CCTTCCTCGTAGGCCGATTCTTGGGCTATGCTCATGCCGCTGGCGAAGTTCACATTTCAGAAAATAACCAATGGC
TCTCTTGTCCCGGCCACGACAACACCAGCTCGCAGTGCATCGTCGGTGATGTCCCAAACATCTTTGAGGGTAACC
CGGATGACCACAGTGGTCCTTACAATGGTATAACCATGGGCTGTTAA

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