Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|001400
Gene name
Location	scaffold_1:334486..335866
Strand	+
Gene length (bp)	1380
Transcript length (bp)	1380
Coding sequence length (bp)	1380
Protein length (aa)	460

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00415	RCC1	Regulator of chromosome condensation (RCC1) repeat	1.6E-05	389	439

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O42645\|YF94_SCHPO	RCC1 repeat-containing protein C10F6.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC10F6.04 PE=3 SV=1	4	445	2.0E-08
sp\|Q9UGK8\|SRGEF_HUMAN	Secretion-regulating guanine nucleotide exchange factor OS=Homo sapiens GN=SERGEF PE=1 SV=2	114	419	1.0E-06
sp\|Q80YD6\|SRGEF_MOUSE	Secretion-regulating guanine nucleotide exchange factor OS=Mus musculus GN=Sergef PE=2 SV=2	4	441	2.0E-06
sp\|Q15034\|HERC3_HUMAN	Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1	45	450	5.0E-06

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 14	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|001400 MLNLLSAGSNAQGQLGNSTIDDSHTFRACSFAGSPPETLPPSVTNVIDVTNGSNHTLALLEVMIDGKKSTEVWGC GDGRKGQLGPIYKRRHTDQGSTTIFQNLAFADAFDKLGLGGYTITTIGTTWETSYLALQKLGKRDLIVSFGSNDF GDLGVGKDSGDKTVEKGLGIHVVNFSHIAVGGKTIRSAQSVTVEKLRTGQRHAIASLQVIWAGKEPMQILVGWGA FRHGQLGTVPPSSKPFLTSTISKSSPTTPLEPTYHSRPTLIMSLAAPSDFVTEYSLGIHHSVFLHASGHVSFRGS NRKNQTQGLNACRNICDIKCTWNGSYMLTKDNPPHVLSTGSNSHGQLGRVEDSSSWKVEVPIDEDSKAIRTLACG SEHSLVCVVNEQGDDEVWGWGWNEHGNLGVGHTLDAPAPLKMWLPAQPPENIEPHPVRNVWAGTGSSWILCGSTD GTVEKTTSM*
Coding	>AgabiH97\|001400 ATGTTAAACCTGTTATCCGCAGGTTCAAATGCACAAGGCCAACTGGGTAACTCAACCATCGACGACTCCCATACC TTCAGAGCCTGTTCTTTTGCCGGATCACCACCCGAAACTCTACCCCCTAGTGTCACCAATGTCATAGACGTGACG AACGGATCCAATCATACGCTCGCCCTCCTGGAGGTCATGATCGACGGCAAAAAATCCACGGAGGTATGGGGATGT GGTGATGGGAGAAAGGGCCAGCTGGGTCCAATATATAAGCGGCGACATACCGATCAAGGCTCTACCACGATATTC CAGAATTTGGCTTTTGCTGATGCCTTTGACAAACTAGGTTTGGGAGGCTACACGATCACCACCATCGGAACCACA TGGGAGACATCCTATTTGGCCCTTCAGAAGCTAGGGAAACGCGATCTTATCGTATCTTTTGGGTCAAATGACTTT GGCGATCTCGGAGTTGGGAAGGATTCTGGGGACAAAACTGTGGAAAAGGGGCTCGGAATTCATGTCGTCAATTTC TCCCATATCGCTGTTGGAGGAAAAACCATTAGATCTGCTCAAAGCGTGACAGTTGAGAAACTACGAACTGGCCAA AGACACGCCATTGCTTCACTGCAAGTCATTTGGGCCGGCAAGGAGCCTATGCAGATCCTGGTCGGTTGGGGTGCT TTCAGACATGGACAACTCGGTACTGTACCACCCTCTTCCAAACCCTTCCTTACGTCTACCATATCGAAGTCAAGT CCTACCACGCCTTTAGAGCCCACTTATCATTCTCGACCCACCCTCATCATGTCCCTTGCTGCTCCCTCGGATTTT GTCACCGAATATTCCCTCGGAATCCATCATAGCGTATTTCTACATGCATCTGGACATGTCTCCTTCCGGGGTTCA AATCGAAAAAATCAGACTCAAGGATTGAATGCTTGTCGCAACATTTGTGACATCAAATGTACATGGAATGGATCC TATATGCTTACCAAGGACAATCCGCCCCACGTCCTTTCCACCGGGAGTAATTCACATGGTCAGCTAGGGAGGGTG GAAGATTCGAGCAGTTGGAAGGTTGAAGTGCCCATTGACGAAGACAGCAAAGCCATCAGAACGCTGGCTTGCGGA AGCGAGCATTCACTTGTTTGCGTCGTCAACGAGCAGGGAGATGATGAAGTCTGGGGTTGGGGTTGGAACGAACAC GGAAATCTTGGTGTCGGGCATACCCTCGACGCGCCAGCACCGTTGAAAATGTGGCTCCCAGCACAACCGCCAGAG AACATTGAGCCTCACCCCGTACGCAACGTTTGGGCAGGTACCGGTTCGAGTTGGATTCTTTGCGGAAGTACAGAC GGTACGGTCGAGAAAACGACATCCATGTAG
Transcript	>AgabiH97\|001400 ATGTTAAACCTGTTATCCGCAGGTTCAAATGCACAAGGCCAACTGGGTAACTCAACCATCGACGACTCCCATACC TTCAGAGCCTGTTCTTTTGCCGGATCACCACCCGAAACTCTACCCCCTAGTGTCACCAATGTCATAGACGTGACG AACGGATCCAATCATACGCTCGCCCTCCTGGAGGTCATGATCGACGGCAAAAAATCCACGGAGGTATGGGGATGT GGTGATGGGAGAAAGGGCCAGCTGGGTCCAATATATAAGCGGCGACATACCGATCAAGGCTCTACCACGATATTC CAGAATTTGGCTTTTGCTGATGCCTTTGACAAACTAGGTTTGGGAGGCTACACGATCACCACCATCGGAACCACA TGGGAGACATCCTATTTGGCCCTTCAGAAGCTAGGGAAACGCGATCTTATCGTATCTTTTGGGTCAAATGACTTT GGCGATCTCGGAGTTGGGAAGGATTCTGGGGACAAAACTGTGGAAAAGGGGCTCGGAATTCATGTCGTCAATTTC TCCCATATCGCTGTTGGAGGAAAAACCATTAGATCTGCTCAAAGCGTGACAGTTGAGAAACTACGAACTGGCCAA AGACACGCCATTGCTTCACTGCAAGTCATTTGGGCCGGCAAGGAGCCTATGCAGATCCTGGTCGGTTGGGGTGCT TTCAGACATGGACAACTCGGTACTGTACCACCCTCTTCCAAACCCTTCCTTACGTCTACCATATCGAAGTCAAGT CCTACCACGCCTTTAGAGCCCACTTATCATTCTCGACCCACCCTCATCATGTCCCTTGCTGCTCCCTCGGATTTT GTCACCGAATATTCCCTCGGAATCCATCATAGCGTATTTCTACATGCATCTGGACATGTCTCCTTCCGGGGTTCA AATCGAAAAAATCAGACTCAAGGATTGAATGCTTGTCGCAACATTTGTGACATCAAATGTACATGGAATGGATCC TATATGCTTACCAAGGACAATCCGCCCCACGTCCTTTCCACCGGGAGTAATTCACATGGTCAGCTAGGGAGGGTG GAAGATTCGAGCAGTTGGAAGGTTGAAGTGCCCATTGACGAAGACAGCAAAGCCATCAGAACGCTGGCTTGCGGA AGCGAGCATTCACTTGTTTGCGTCGTCAACGAGCAGGGAGATGATGAAGTCTGGGGTTGGGGTTGGAACGAACAC GGAAATCTTGGTGTCGGGCATACCCTCGACGCGCCAGCACCGTTGAAAATGTGGCTCCCAGCACAACCGCCAGAG AACATTGAGCCTCACCCCGTACGCAACGTTTGGGCAGGTACCGGTTCGAGTTGGATTCTTTGCGGAAGTACAGAC GGTACGGTCGAGAAAACGACATCCATGTAG
Gene	>AgabiH97\|001400 ATGTTAAACCTGTTATCCGCAGGTTCAAATGCACAAGGCCAACTGGGTAACTCAACCATCGACGACTCCCATACC TTCAGAGCCTGTTCTTTTGCCGGATCACCACCCGAAACTCTACCCCCTAGTGTCACCAATGTCATAGACGTGACG AACGGATCCAATCATACGCTCGCCCTCCTGGAGGTCATGATCGACGGCAAAAAATCCACGGAGGTATGGGGATGT GGTGATGGGAGAAAGGGCCAGCTGGGTCCAATATATAAGCGGCGACATACCGATCAAGGCTCTACCACGATATTC CAGAATTTGGCTTTTGCTGATGCCTTTGACAAACTAGGTTTGGGAGGCTACACGATCACCACCATCGGAACCACA TGGGAGACATCCTATTTGGCCCTTCAGAAGCTAGGGAAACGCGATCTTATCGTATCTTTTGGGTCAAATGACTTT GGCGATCTCGGAGTTGGGAAGGATTCTGGGGACAAAACTGTGGAAAAGGGGCTCGGAATTCATGTCGTCAATTTC TCCCATATCGCTGTTGGAGGAAAAACCATTAGATCTGCTCAAAGCGTGACAGTTGAGAAACTACGAACTGGCCAA AGACACGCCATTGCTTCACTGCAAGTCATTTGGGCCGGCAAGGAGCCTATGCAGATCCTGGTCGGTTGGGGTGCT TTCAGACATGGACAACTCGGTACTGTACCACCCTCTTCCAAACCCTTCCTTACGTCTACCATATCGAAGTCAAGT CCTACCACGCCTTTAGAGCCCACTTATCATTCTCGACCCACCCTCATCATGTCCCTTGCTGCTCCCTCGGATTTT GTCACCGAATATTCCCTCGGAATCCATCATAGCGTATTTCTACATGCATCTGGACATGTCTCCTTCCGGGGTTCA AATCGAAAAAATCAGACTCAAGGATTGAATGCTTGTCGCAACATTTGTGACATCAAATGTACATGGAATGGATCC TATATGCTTACCAAGGACAATCCGCCCCACGTCCTTTCCACCGGGAGTAATTCACATGGTCAGCTAGGGAGGGTG GAAGATTCGAGCAGTTGGAAGGTTGAAGTGCCCATTGACGAAGACAGCAAAGCCATCAGAACGCTGGCTTGCGGA AGCGAGCATTCACTTGTTTGCGTCGTCAACGAGCAGGGAGATGATGAAGTCTGGGGTTGGGGTTGGAACGAACAC GGAAATCTTGGTGTCGGGCATACCCTCGACGCGCCAGCACCGTTGAAAATGTGGCTCCCAGCACAACCGCCAGAG AACATTGAGCCTCACCCCGTACGCAACGTTTGGGCAGGTACCGGTTCGAGTTGGATTCTTTGCGGAAGTACAGAC GGTACGGTCGAGAAAACGACATCCATGTAG

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