Protein ID | AgabiH97|001350 |
Gene name | |
Location | scaffold_1:315452..317051 |
Strand | + |
Gene length (bp) | 1599 |
Transcript length (bp) | 1263 |
Coding sequence length (bp) | 1263 |
Protein length (aa) | 421 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF09451 | ATG27 | Autophagy-related protein 27 | 1.3E-09 | 70 | 247 |
PF00878 | CIMR | Cation-independent mannose-6-phosphate receptor repeat | 3.1E-05 | 125 | 173 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005537 | mannose binding | Yes |
GO:0038023 | signaling receptor activity | Yes |
GO:0007041 | lysosomal transport | Yes |
GO:0046907 | intracellular transport | No |
GO:0030246 | carbohydrate binding | No |
GO:0007034 | vacuolar transport | No |
GO:0006810 | transport | No |
GO:0036094 | small molecule binding | No |
GO:0009987 | cellular process | No |
GO:0008150 | biological_process | No |
GO:0051179 | localization | No |
GO:0051234 | establishment of localization | No |
GO:0051649 | establishment of localization in cell | No |
GO:0060089 | molecular transducer activity | No |
GO:0005488 | binding | No |
GO:0051641 | cellular localization | No |
GO:0003674 | molecular_function | No |
GO:0048029 | monosaccharide binding | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
Yes | 1 - 19 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 184 | 206 | 22 |
2 | 394 | 413 | 19 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
Casing | Casing mycelium | 57.04 | 33.72 | 80.35 |
Initials | Initials knots | 59.40 | 35.41 | 83.40 |
Pileal_Stipeal_center | Stage I stipe center | 69.25 | 41.35 | 97.14 |
Pileal_Stipeal_shell | Stage I stipe shell | 54.60 | 32.50 | 76.71 |
DIF_stipe_center | Stage II stipe center | 57.88 | 34.52 | 81.23 |
DIF_stipe_shell | Stage II stipe shell | 68.73 | 41.19 | 96.27 |
DIF_stipe_skin | Stage II stipe skin | 71.03 | 42.61 | 99.46 |
DIF_cap_skin | Stage II cap skin | 56.07 | 33.40 | 78.74 |
DIF_cap_tissue | Stage II cap tissue | 54.59 | 32.46 | 76.73 |
DIF_gill_tissue | Stage II gill tissue | 52.94 | 31.43 | 74.45 |
YFB_stipe_center | Young fruiting body stipe center | 52.80 | 31.26 | 74.34 |
YFB_stipe_shell | Young fruiting body stipe shell | 58.41 | 34.84 | 81.97 |
YFB_stipe_skin | Young fruiting body stipe skin | 63.49 | 37.79 | 89.20 |
YFB_cap_skin | Young fruiting body cap skin | 62.22 | 37.07 | 87.37 |
YFB_cap_tissue | Young fruiting body cap tissue | 61.66 | 36.72 | 86.59 |
YFB_gill_tissue | Young fruiting body gill tissue | 58.68 | 34.98 | 82.38 |
YFB_veil | Young fruiting body veil | 54.47 | 32.31 | 76.63 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
Casing | DIF_gill_tissue | 0.881514 | no |
Casing | YFB_stipe_center | 0.878407 | no |
Casing | YFB_stipe_shell | 0.965367 | no |
Casing | YFB_stipe_skin | 0.812796 | no |
Casing | YFB_cap_skin | 0.858297 | no |
Casing | YFB_cap_tissue | 0.875473 | no |
Casing | YFB_gill_tissue | 0.958652 | no |
Casing | YFB_veil | 0.931559 | no |
Casing | Initials | 0.939583 | no |
Casing | Pileal_Stipeal_center | 0.612292 | no |
Casing | Pileal_Stipeal_shell | 0.934109 | no |
Casing | DIF_stipe_center | 0.978545 | no |
Casing | DIF_stipe_shell | 0.621927 | no |
Casing | DIF_stipe_skin | 0.536499 | no |
Casing | DIF_cap_skin | 0.975571 | no |
Casing | DIF_cap_tissue | 0.935100 | no |
DIF_gill_tissue | YFB_stipe_center | 0.995372 | no |
DIF_gill_tissue | YFB_stipe_shell | 0.833278 | no |
DIF_gill_tissue | YFB_stipe_skin | 0.640499 | no |
DIF_gill_tissue | YFB_cap_skin | 0.686282 | no |
DIF_gill_tissue | YFB_cap_tissue | 0.711339 | no |
DIF_gill_tissue | YFB_gill_tissue | 0.825538 | no |
DIF_gill_tissue | YFB_veil | 0.957984 | no |
YFB_stipe_center | YFB_stipe_shell | 0.828424 | no |
YFB_stipe_center | YFB_stipe_skin | 0.636908 | no |
YFB_stipe_center | YFB_cap_skin | 0.682436 | no |
YFB_stipe_center | YFB_cap_tissue | 0.706133 | no |
YFB_stipe_center | YFB_gill_tissue | 0.821119 | no |
YFB_stipe_center | YFB_veil | 0.955405 | no |
YFB_stipe_shell | YFB_stipe_skin | 0.863868 | no |
YFB_stipe_shell | YFB_cap_skin | 0.903299 | no |
YFB_stipe_shell | YFB_cap_tissue | 0.919193 | no |
YFB_stipe_shell | YFB_gill_tissue | 0.993235 | no |
YFB_stipe_shell | YFB_veil | 0.890171 | no |
YFB_stipe_skin | YFB_cap_skin | 0.972168 | no |
YFB_stipe_skin | YFB_cap_tissue | 0.959159 | no |
YFB_stipe_skin | YFB_gill_tissue | 0.878078 | no |
YFB_stipe_skin | YFB_veil | 0.715110 | no |
YFB_cap_skin | YFB_cap_tissue | 0.986381 | no |
YFB_cap_skin | YFB_gill_tissue | 0.911334 | no |
YFB_cap_skin | YFB_veil | 0.758915 | no |
YFB_cap_tissue | YFB_gill_tissue | 0.928498 | no |
YFB_cap_tissue | YFB_veil | 0.783132 | no |
YFB_gill_tissue | YFB_veil | 0.882953 | no |
Initials | DIF_gill_tissue | 0.800492 | no |
Initials | YFB_stipe_center | 0.795785 | no |
Initials | YFB_stipe_shell | 0.975878 | no |
Initials | YFB_stipe_skin | 0.895917 | no |
Initials | YFB_cap_skin | 0.931620 | no |
Initials | YFB_cap_tissue | 0.946862 | no |
Initials | YFB_gill_tissue | 0.982439 | no |
Initials | YFB_veil | 0.859524 | no |
Initials | Pileal_Stipeal_center | 0.716595 | no |
Initials | Pileal_Stipeal_shell | 0.862130 | no |
Initials | DIF_stipe_center | 0.963506 | no |
Initials | DIF_stipe_shell | 0.726861 | no |
Initials | DIF_stipe_skin | 0.645257 | no |
Initials | DIF_cap_skin | 0.915014 | no |
Initials | DIF_cap_tissue | 0.863331 | no |
Pileal_Stipeal_center | DIF_gill_tissue | 0.421150 | no |
Pileal_Stipeal_center | YFB_stipe_center | 0.417331 | no |
Pileal_Stipeal_center | YFB_stipe_shell | 0.668900 | no |
Pileal_Stipeal_center | YFB_stipe_skin | 0.855782 | no |
Pileal_Stipeal_center | YFB_cap_skin | 0.816391 | no |
Pileal_Stipeal_center | YFB_cap_tissue | 0.797542 | no |
Pileal_Stipeal_center | YFB_gill_tissue | 0.684435 | no |
Pileal_Stipeal_center | YFB_veil | 0.495303 | no |
Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.500733 | no |
Pileal_Stipeal_center | DIF_stipe_center | 0.648034 | no |
Pileal_Stipeal_center | DIF_stipe_shell | 0.988880 | no |
Pileal_Stipeal_center | DIF_stipe_skin | 0.962574 | no |
Pileal_Stipeal_center | DIF_cap_skin | 0.572746 | no |
Pileal_Stipeal_center | DIF_cap_tissue | 0.501473 | no |
Pileal_Stipeal_shell | DIF_gill_tissue | 0.953717 | no |
Pileal_Stipeal_shell | YFB_stipe_center | 0.950430 | no |
Pileal_Stipeal_shell | YFB_stipe_shell | 0.894814 | no |
Pileal_Stipeal_shell | YFB_stipe_skin | 0.718881 | no |
Pileal_Stipeal_shell | YFB_cap_skin | 0.765997 | no |
Pileal_Stipeal_shell | YFB_cap_tissue | 0.786418 | no |
Pileal_Stipeal_shell | YFB_gill_tissue | 0.888319 | no |
Pileal_Stipeal_shell | YFB_veil | 0.996056 | no |
Pileal_Stipeal_shell | DIF_stipe_center | 0.911894 | no |
Pileal_Stipeal_shell | DIF_stipe_shell | 0.515125 | no |
Pileal_Stipeal_shell | DIF_stipe_skin | 0.437591 | no |
Pileal_Stipeal_shell | DIF_cap_skin | 0.962135 | no |
Pileal_Stipeal_shell | DIF_cap_tissue | 0.999643 | no |
DIF_stipe_center | DIF_gill_tissue | 0.853437 | no |
DIF_stipe_center | YFB_stipe_center | 0.849818 | no |
DIF_stipe_center | YFB_stipe_shell | 0.986251 | no |
DIF_stipe_center | YFB_stipe_skin | 0.844618 | no |
DIF_stipe_center | YFB_cap_skin | 0.885478 | no |
DIF_stipe_center | YFB_cap_tissue | 0.902927 | no |
DIF_stipe_center | YFB_gill_tissue | 0.980421 | no |
DIF_stipe_center | YFB_veil | 0.906654 | no |
DIF_stipe_center | DIF_stipe_shell | 0.659443 | no |
DIF_stipe_center | DIF_stipe_skin | 0.577094 | no |
DIF_stipe_center | DIF_cap_skin | 0.955853 | no |
DIF_stipe_center | DIF_cap_tissue | 0.911042 | no |
DIF_stipe_shell | DIF_gill_tissue | 0.427277 | no |
DIF_stipe_shell | YFB_stipe_center | 0.424144 | no |
DIF_stipe_shell | YFB_stipe_shell | 0.681549 | no |
DIF_stipe_shell | YFB_stipe_skin | 0.868329 | no |
DIF_stipe_shell | YFB_cap_skin | 0.828081 | no |
DIF_stipe_shell | YFB_cap_tissue | 0.810925 | no |
DIF_stipe_shell | YFB_gill_tissue | 0.696947 | no |
DIF_stipe_shell | YFB_veil | 0.503895 | no |
DIF_stipe_shell | DIF_stipe_skin | 0.950908 | no |
DIF_stipe_shell | DIF_cap_skin | 0.581181 | no |
DIF_stipe_shell | DIF_cap_tissue | 0.509529 | no |
DIF_stipe_skin | DIF_gill_tissue | 0.353026 | no |
DIF_stipe_skin | YFB_stipe_center | 0.350907 | no |
DIF_stipe_skin | YFB_stipe_shell | 0.597707 | no |
DIF_stipe_skin | YFB_stipe_skin | 0.799856 | no |
DIF_stipe_skin | YFB_cap_skin | 0.756333 | no |
DIF_stipe_skin | YFB_cap_tissue | 0.735060 | no |
DIF_stipe_skin | YFB_gill_tissue | 0.614230 | no |
DIF_stipe_skin | YFB_veil | 0.421621 | no |
DIF_stipe_skin | DIF_cap_skin | 0.498492 | no |
DIF_stipe_skin | DIF_cap_tissue | 0.425028 | no |
DIF_cap_skin | DIF_gill_tissue | 0.911254 | no |
DIF_cap_skin | YFB_stipe_center | 0.908427 | no |
DIF_cap_skin | YFB_stipe_shell | 0.939905 | no |
DIF_cap_skin | YFB_stipe_skin | 0.777315 | no |
DIF_cap_skin | YFB_cap_skin | 0.822795 | no |
DIF_cap_skin | YFB_cap_tissue | 0.843211 | no |
DIF_cap_skin | YFB_gill_tissue | 0.932351 | no |
DIF_cap_skin | YFB_veil | 0.956969 | no |
DIF_cap_skin | DIF_cap_tissue | 0.961125 | no |
DIF_cap_tissue | DIF_gill_tissue | 0.953972 | no |
DIF_cap_tissue | YFB_stipe_center | 0.950933 | no |
DIF_cap_tissue | YFB_stipe_shell | 0.894431 | no |
DIF_cap_tissue | YFB_stipe_skin | 0.717483 | no |
DIF_cap_tissue | YFB_cap_skin | 0.764664 | no |
DIF_cap_tissue | YFB_cap_tissue | 0.785227 | no |
DIF_cap_tissue | YFB_gill_tissue | 0.888290 | no |
DIF_cap_tissue | YFB_veil | 0.996158 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >AgabiH97|001350 MRIVQHLPLLALAGVVLADDKPCTAYADGKYYDLNNLKGRPDSELKTPGGHDLKFNVCQGVTTELYGLKEDIKAE NVAGFVRKGHGDFAIGQVKTTLSVVESRPRLVFSDGSNCKASPDGASLGMKASTIVEFICDTSVFGAGKPRLVGQ LPPGDDEVGCSYFIEWKTNFACPTSAGGGGFWGFLGMLAIVTLILLMTYTALGTLYNRYVLQLRGFDQIPQFSVE SMKYHAREATDWIKDILAAYNTGGNGGGYVPGRSAAANPFSHQTQANEELNINNNFVRPQATTIRSQPDTNPVSH HTQSQAETQSTHNSPPPLPPKRSLPQIAPRRVALGSRGPTKEEQDFLLGEEEEEEGQELEDKPSSKSSVPPPLPT NVDSSTPARIRCGYDDGGFATLPCYLVLYPGLISHYLWKSMRPLF* |
Coding | >AgabiH97|001350 ATGCGCATCGTGCAGCATCTACCCCTCCTCGCCCTTGCCGGCGTAGTTCTTGCCGACGACAAGCCATGCACAGCC TACGCTGACGGGAAATACTACGACCTCAACAATCTCAAAGGACGGCCGGACTCTGAACTCAAGACCCCAGGCGGA CACGATCTCAAGTTCAACGTCTGCCAGGGCGTAACTACTGAGCTTTATGGTCTCAAGGAGGATATCAAAGCAGAA AATGTCGCTGGTTTCGTCCGTAAAGGTCATGGAGACTTTGCGATTGGTCAGGTCAAAACCACACTCTCAGTCGTG GAATCTAGGCCCCGCCTTGTATTTTCTGATGGATCAAATTGCAAGGCGTCCCCAGACGGAGCCAGCCTTGGCATG AAAGCTTCTACTATCGTCGAATTTATCTGTGATACCTCTGTGTTCGGCGCGGGGAAGCCCCGTCTCGTAGGTCAA CTACCCCCTGGAGACGATGAAGTTGGCTGCTCCTACTTCATTGAGTGGAAGACCAACTTTGCATGTCCGACGTCC GCAGGCGGCGGCGGGTTCTGGGGTTTTCTCGGCATGTTAGCCATTGTAACACTCATCCTTCTCATGACTTATACC GCGTTGGGCACGTTGTATAATCGATATGTCCTACAACTTCGTGGCTTTGATCAAATACCTCAATTCTCTGTTGAG AGCATGAAGTACCATGCACGCGAGGCTACAGATTGGATAAAGGATATCTTGGCTGCGTACAACACCGGTGGAAAC GGAGGAGGATATGTTCCTGGAAGATCTGCGGCAGCCAACCCTTTCAGCCATCAAACTCAGGCAAATGAAGAACTC AACATCAATAATAACTTTGTTCGTCCCCAGGCAACTACTATCCGTTCACAACCCGATACCAATCCTGTATCCCAC CATACTCAATCACAAGCCGAGACACAGTCGACACATAACTCGCCCCCACCTTTACCCCCCAAGCGATCACTTCCT CAAATTGCACCTCGGCGTGTAGCACTGGGCAGCCGAGGGCCAACAAAAGAGGAACAGGACTTCTTACTTGGAGAA GAGGAAGAAGAGGAAGGCCAGGAATTAGAAGACAAACCCAGTTCAAAGTCTTCTGTCCCACCACCACTGCCAACT AATGTCGATTCCTCGACTCCGGCGAGGATTCGCTGCGGCTATGATGATGGGGGCTTCGCTACATTACCTTGCTAT CTTGTCCTGTACCCTGGGTTGATCTCTCATTATCTGTGGAAATCAATGAGACCATTGTTCTAG |
Transcript | >AgabiH97|001350 ATGCGCATCGTGCAGCATCTACCCCTCCTCGCCCTTGCCGGCGTAGTTCTTGCCGACGACAAGCCATGCACAGCC TACGCTGACGGGAAATACTACGACCTCAACAATCTCAAAGGACGGCCGGACTCTGAACTCAAGACCCCAGGCGGA CACGATCTCAAGTTCAACGTCTGCCAGGGCGTAACTACTGAGCTTTATGGTCTCAAGGAGGATATCAAAGCAGAA AATGTCGCTGGTTTCGTCCGTAAAGGTCATGGAGACTTTGCGATTGGTCAGGTCAAAACCACACTCTCAGTCGTG GAATCTAGGCCCCGCCTTGTATTTTCTGATGGATCAAATTGCAAGGCGTCCCCAGACGGAGCCAGCCTTGGCATG AAAGCTTCTACTATCGTCGAATTTATCTGTGATACCTCTGTGTTCGGCGCGGGGAAGCCCCGTCTCGTAGGTCAA CTACCCCCTGGAGACGATGAAGTTGGCTGCTCCTACTTCATTGAGTGGAAGACCAACTTTGCATGTCCGACGTCC GCAGGCGGCGGCGGGTTCTGGGGTTTTCTCGGCATGTTAGCCATTGTAACACTCATCCTTCTCATGACTTATACC GCGTTGGGCACGTTGTATAATCGATATGTCCTACAACTTCGTGGCTTTGATCAAATACCTCAATTCTCTGTTGAG AGCATGAAGTACCATGCACGCGAGGCTACAGATTGGATAAAGGATATCTTGGCTGCGTACAACACCGGTGGAAAC GGAGGAGGATATGTTCCTGGAAGATCTGCGGCAGCCAACCCTTTCAGCCATCAAACTCAGGCAAATGAAGAACTC AACATCAATAATAACTTTGTTCGTCCCCAGGCAACTACTATCCGTTCACAACCCGATACCAATCCTGTATCCCAC CATACTCAATCACAAGCCGAGACACAGTCGACACATAACTCGCCCCCACCTTTACCCCCCAAGCGATCACTTCCT CAAATTGCACCTCGGCGTGTAGCACTGGGCAGCCGAGGGCCAACAAAAGAGGAACAGGACTTCTTACTTGGAGAA GAGGAAGAAGAGGAAGGCCAGGAATTAGAAGACAAACCCAGTTCAAAGTCTTCTGTCCCACCACCACTGCCAACT AATGTCGATTCCTCGACTCCGGCGAGGATTCGCTGCGGCTATGATGATGGGGGCTTCGCTACATTACCTTGCTAT CTTGTCCTGTACCCTGGGTTGATCTCTCATTATCTGTGGAAATCAATGAGACCATTGTTCTAG |
Gene | >AgabiH97|001350 ATGCGCATCGTGCAGCATCTACCCCTCCTCGCCCTTGCCGGCGTAGTTCTTGCCGACGACAAGCCATGCACAGCC TACGCTGACGGGAAATACTACGACCTCAACAATCTCAAAGGACGGTGAGGCGTCGTCGAGTGGTCGTCTGCATCG TCTCTAAACAACTGTGTTGTCCAGGCCGGACTCTGAACTCAAGACCCCAGGCGGACACGATCTCAAGTTCAACGT CTGCCAGGGCGTAACTACTGAGCTTTATGGTCTCAAGGAGGATATCAAAGCAGAAAATGTCGCTGGTTTCGTCCG TAAAGGTCATGGAGACTTTGCGATTGGGTGGGTGCTGCGCATTGCCGACGTCACCGCGAACTAAGCATCCGGCCA ATAGTCAGGTCAAAACCACACTCTCAGTCGTGGAATCTAGGCCCCGCCTTGTATTTTCTGATGGATCAAATTGCA AGGCGTCCCCAGACGGAGCCAGCCTTGGCATGAAAGCTTCTACTATCGTCGAATTTATCTGTGATACCTCTGTGT TCGGCGCGGGGAAGCCCCGTCTCGTAGGTCAACTACCCCCTGGAGACGATGAAGTTGGCTGCTCCTACTTCATTG AGTGGAAGACCAACGTAAGGCAGCCCTTTCCTCCGGTACCGAACATGTTTCGCCTAACGGTCTGATAGTTTGCAT GTCCGACGTCCGCAGGCGGCGGCGGGTTCTGGGGTTTTCTCGGCATGTTAGCCATTGTGTACACCACATCTCTTA CTTTTCACTGTTTGTGACTTCAAGCTGACCCGCTGCCTAGAACACTCATCCTTCTCATGACTTATACCGCGTTGG GCACGTTGTATAATCGATATGTCCTACAACTTCGTGGCTTTGATCAAATACCTCAATTCTCTGTTGAGAGCATGA AGTACCATGCACGCGAGGCTACAGATTGGATAAAGGATATCTTGGCTGCGTACAACACCGGTGGAAACGGAGGAG GATATGTTCCTGGAAGATCTGCGGCAGCCAACCCTTTCAGCCATCAAACTCAGGCAAATGAAGAACTCAACATCA ATAATAACTTTGTTCGTCCCCAGGCAACTACTATCCGTTCACAACCCGATACCAATCCTGTATCCCACCATACTC AATCACAAGCCGAGACACAGTCGACACATAACTCGCCCCCACCTTTACCCCCCAAGCGATCACTTCCTCAAATTG CACCTCGGCGTGTAGCACTGGGCAGCCGAGGGCCAACAAAAGAGGAACAGGACTTCTTACTTGGAGAAGAGGAAG AAGAGGAAGGCCAGGAATTAGAAGACAAACCCAGTTCAAAGTCTTCTGTCCCACCACCACTGCCAACTAATGTCG ATTCCTCGACTCGTGGCTCTTCCAGCACATTGAATCGTGGAGACGTTAATGTAGCGTCTATTCGTGGTCAAGATA GCGGCGAGGATTCGCTGCGGCTATGATGATGGGGGCTTCGCTACATTACCTTGCTATCTTGTCCTGTACCCTGGG TTGATCTCTCATTATCGTATTTCCGCCTCACATGTTGGCTACTATTCTGAAACTGATTTAGTCTTTTCAGTGTGG AAATCAATGAGACCATTGTTCTAG |