© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|001350 |
| Gene name | |
| Location | scaffold_1:315452..317051 |
| Strand | + |
| Gene length (bp) | 1599 |
| Transcript length (bp) | 1263 |
| Coding sequence length (bp) | 1263 |
| Protein length (aa) | 421 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09451 | ATG27 | Autophagy-related protein 27 | 1.3E-09 | 70 | 247 |
| PF00878 | CIMR | Cation-independent mannose-6-phosphate receptor repeat | 3.1E-05 | 125 | 173 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005537 | mannose binding | Yes |
| GO:0038023 | signaling receptor activity | Yes |
| GO:0007041 | lysosomal transport | Yes |
| GO:0046907 | intracellular transport | No |
| GO:0030246 | carbohydrate binding | No |
| GO:0007034 | vacuolar transport | No |
| GO:0006810 | transport | No |
| GO:0036094 | small molecule binding | No |
| GO:0009987 | cellular process | No |
| GO:0008150 | biological_process | No |
| GO:0051179 | localization | No |
| GO:0051234 | establishment of localization | No |
| GO:0051649 | establishment of localization in cell | No |
| GO:0060089 | molecular transducer activity | No |
| GO:0005488 | binding | No |
| GO:0051641 | cellular localization | No |
| GO:0003674 | molecular_function | No |
| GO:0048029 | monosaccharide binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 184 | 206 | 22 |
| 2 | 394 | 413 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|001350 MRIVQHLPLLALAGVVLADDKPCTAYADGKYYDLNNLKGRPDSELKTPGGHDLKFNVCQGVTTELYGLKEDIKAE NVAGFVRKGHGDFAIGQVKTTLSVVESRPRLVFSDGSNCKASPDGASLGMKASTIVEFICDTSVFGAGKPRLVGQ LPPGDDEVGCSYFIEWKTNFACPTSAGGGGFWGFLGMLAIVTLILLMTYTALGTLYNRYVLQLRGFDQIPQFSVE SMKYHAREATDWIKDILAAYNTGGNGGGYVPGRSAAANPFSHQTQANEELNINNNFVRPQATTIRSQPDTNPVSH HTQSQAETQSTHNSPPPLPPKRSLPQIAPRRVALGSRGPTKEEQDFLLGEEEEEEGQELEDKPSSKSSVPPPLPT NVDSSTPARIRCGYDDGGFATLPCYLVLYPGLISHYLWKSMRPLF* |
| Coding | >AgabiH97|001350 ATGCGCATCGTGCAGCATCTACCCCTCCTCGCCCTTGCCGGCGTAGTTCTTGCCGACGACAAGCCATGCACAGCC TACGCTGACGGGAAATACTACGACCTCAACAATCTCAAAGGACGGCCGGACTCTGAACTCAAGACCCCAGGCGGA CACGATCTCAAGTTCAACGTCTGCCAGGGCGTAACTACTGAGCTTTATGGTCTCAAGGAGGATATCAAAGCAGAA AATGTCGCTGGTTTCGTCCGTAAAGGTCATGGAGACTTTGCGATTGGTCAGGTCAAAACCACACTCTCAGTCGTG GAATCTAGGCCCCGCCTTGTATTTTCTGATGGATCAAATTGCAAGGCGTCCCCAGACGGAGCCAGCCTTGGCATG AAAGCTTCTACTATCGTCGAATTTATCTGTGATACCTCTGTGTTCGGCGCGGGGAAGCCCCGTCTCGTAGGTCAA CTACCCCCTGGAGACGATGAAGTTGGCTGCTCCTACTTCATTGAGTGGAAGACCAACTTTGCATGTCCGACGTCC GCAGGCGGCGGCGGGTTCTGGGGTTTTCTCGGCATGTTAGCCATTGTAACACTCATCCTTCTCATGACTTATACC GCGTTGGGCACGTTGTATAATCGATATGTCCTACAACTTCGTGGCTTTGATCAAATACCTCAATTCTCTGTTGAG AGCATGAAGTACCATGCACGCGAGGCTACAGATTGGATAAAGGATATCTTGGCTGCGTACAACACCGGTGGAAAC GGAGGAGGATATGTTCCTGGAAGATCTGCGGCAGCCAACCCTTTCAGCCATCAAACTCAGGCAAATGAAGAACTC AACATCAATAATAACTTTGTTCGTCCCCAGGCAACTACTATCCGTTCACAACCCGATACCAATCCTGTATCCCAC CATACTCAATCACAAGCCGAGACACAGTCGACACATAACTCGCCCCCACCTTTACCCCCCAAGCGATCACTTCCT CAAATTGCACCTCGGCGTGTAGCACTGGGCAGCCGAGGGCCAACAAAAGAGGAACAGGACTTCTTACTTGGAGAA GAGGAAGAAGAGGAAGGCCAGGAATTAGAAGACAAACCCAGTTCAAAGTCTTCTGTCCCACCACCACTGCCAACT AATGTCGATTCCTCGACTCCGGCGAGGATTCGCTGCGGCTATGATGATGGGGGCTTCGCTACATTACCTTGCTAT CTTGTCCTGTACCCTGGGTTGATCTCTCATTATCTGTGGAAATCAATGAGACCATTGTTCTAG |
| Transcript | >AgabiH97|001350 ATGCGCATCGTGCAGCATCTACCCCTCCTCGCCCTTGCCGGCGTAGTTCTTGCCGACGACAAGCCATGCACAGCC TACGCTGACGGGAAATACTACGACCTCAACAATCTCAAAGGACGGCCGGACTCTGAACTCAAGACCCCAGGCGGA CACGATCTCAAGTTCAACGTCTGCCAGGGCGTAACTACTGAGCTTTATGGTCTCAAGGAGGATATCAAAGCAGAA AATGTCGCTGGTTTCGTCCGTAAAGGTCATGGAGACTTTGCGATTGGTCAGGTCAAAACCACACTCTCAGTCGTG GAATCTAGGCCCCGCCTTGTATTTTCTGATGGATCAAATTGCAAGGCGTCCCCAGACGGAGCCAGCCTTGGCATG AAAGCTTCTACTATCGTCGAATTTATCTGTGATACCTCTGTGTTCGGCGCGGGGAAGCCCCGTCTCGTAGGTCAA CTACCCCCTGGAGACGATGAAGTTGGCTGCTCCTACTTCATTGAGTGGAAGACCAACTTTGCATGTCCGACGTCC GCAGGCGGCGGCGGGTTCTGGGGTTTTCTCGGCATGTTAGCCATTGTAACACTCATCCTTCTCATGACTTATACC GCGTTGGGCACGTTGTATAATCGATATGTCCTACAACTTCGTGGCTTTGATCAAATACCTCAATTCTCTGTTGAG AGCATGAAGTACCATGCACGCGAGGCTACAGATTGGATAAAGGATATCTTGGCTGCGTACAACACCGGTGGAAAC GGAGGAGGATATGTTCCTGGAAGATCTGCGGCAGCCAACCCTTTCAGCCATCAAACTCAGGCAAATGAAGAACTC AACATCAATAATAACTTTGTTCGTCCCCAGGCAACTACTATCCGTTCACAACCCGATACCAATCCTGTATCCCAC CATACTCAATCACAAGCCGAGACACAGTCGACACATAACTCGCCCCCACCTTTACCCCCCAAGCGATCACTTCCT CAAATTGCACCTCGGCGTGTAGCACTGGGCAGCCGAGGGCCAACAAAAGAGGAACAGGACTTCTTACTTGGAGAA GAGGAAGAAGAGGAAGGCCAGGAATTAGAAGACAAACCCAGTTCAAAGTCTTCTGTCCCACCACCACTGCCAACT AATGTCGATTCCTCGACTCCGGCGAGGATTCGCTGCGGCTATGATGATGGGGGCTTCGCTACATTACCTTGCTAT CTTGTCCTGTACCCTGGGTTGATCTCTCATTATCTGTGGAAATCAATGAGACCATTGTTCTAG |
| Gene | >AgabiH97|001350 ATGCGCATCGTGCAGCATCTACCCCTCCTCGCCCTTGCCGGCGTAGTTCTTGCCGACGACAAGCCATGCACAGCC TACGCTGACGGGAAATACTACGACCTCAACAATCTCAAAGGACGGTGAGGCGTCGTCGAGTGGTCGTCTGCATCG TCTCTAAACAACTGTGTTGTCCAGGCCGGACTCTGAACTCAAGACCCCAGGCGGACACGATCTCAAGTTCAACGT CTGCCAGGGCGTAACTACTGAGCTTTATGGTCTCAAGGAGGATATCAAAGCAGAAAATGTCGCTGGTTTCGTCCG TAAAGGTCATGGAGACTTTGCGATTGGGTGGGTGCTGCGCATTGCCGACGTCACCGCGAACTAAGCATCCGGCCA ATAGTCAGGTCAAAACCACACTCTCAGTCGTGGAATCTAGGCCCCGCCTTGTATTTTCTGATGGATCAAATTGCA AGGCGTCCCCAGACGGAGCCAGCCTTGGCATGAAAGCTTCTACTATCGTCGAATTTATCTGTGATACCTCTGTGT TCGGCGCGGGGAAGCCCCGTCTCGTAGGTCAACTACCCCCTGGAGACGATGAAGTTGGCTGCTCCTACTTCATTG AGTGGAAGACCAACGTAAGGCAGCCCTTTCCTCCGGTACCGAACATGTTTCGCCTAACGGTCTGATAGTTTGCAT GTCCGACGTCCGCAGGCGGCGGCGGGTTCTGGGGTTTTCTCGGCATGTTAGCCATTGTGTACACCACATCTCTTA CTTTTCACTGTTTGTGACTTCAAGCTGACCCGCTGCCTAGAACACTCATCCTTCTCATGACTTATACCGCGTTGG GCACGTTGTATAATCGATATGTCCTACAACTTCGTGGCTTTGATCAAATACCTCAATTCTCTGTTGAGAGCATGA AGTACCATGCACGCGAGGCTACAGATTGGATAAAGGATATCTTGGCTGCGTACAACACCGGTGGAAACGGAGGAG GATATGTTCCTGGAAGATCTGCGGCAGCCAACCCTTTCAGCCATCAAACTCAGGCAAATGAAGAACTCAACATCA ATAATAACTTTGTTCGTCCCCAGGCAACTACTATCCGTTCACAACCCGATACCAATCCTGTATCCCACCATACTC AATCACAAGCCGAGACACAGTCGACACATAACTCGCCCCCACCTTTACCCCCCAAGCGATCACTTCCTCAAATTG CACCTCGGCGTGTAGCACTGGGCAGCCGAGGGCCAACAAAAGAGGAACAGGACTTCTTACTTGGAGAAGAGGAAG AAGAGGAAGGCCAGGAATTAGAAGACAAACCCAGTTCAAAGTCTTCTGTCCCACCACCACTGCCAACTAATGTCG ATTCCTCGACTCGTGGCTCTTCCAGCACATTGAATCGTGGAGACGTTAATGTAGCGTCTATTCGTGGTCAAGATA GCGGCGAGGATTCGCTGCGGCTATGATGATGGGGGCTTCGCTACATTACCTTGCTATCTTGTCCTGTACCCTGGG TTGATCTCTCATTATCGTATTTCCGCCTCACATGTTGGCTACTATTCTGAAACTGATTTAGTCTTTTCAGTGTGG AAATCAATGAGACCATTGTTCTAG |