Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	AgabiH97|000570
Gene name
Location	scaffold_1:139439..139822
Strand	+
Gene length (bp)	383
Transcript length (bp)	333
Coding sequence length (bp)	333
Protein length (aa)	111

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 23	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	5	27	22
2	47	69	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Casing	Casing mycelium	0.14	0.00	0.45
Initials	Initials knots	1.68	0.00	3.83
Pileal_Stipeal_center	Stage I stipe center	0.18	0.00	0.48
Pileal_Stipeal_shell	Stage I stipe shell	4.38	0.20	8.56
DIF_stipe_center	Stage II stipe center	3.28	0.06	6.51
DIF_stipe_shell	Stage II stipe shell	0.16	0.00	0.48
DIF_stipe_skin	Stage II stipe skin	0.34	0.00	0.78
DIF_cap_skin	Stage II cap skin	4.68	0.47	8.88
DIF_cap_tissue	Stage II cap tissue	11.93	3.48	20.38
DIF_gill_tissue	Stage II gill tissue	9.92	2.61	17.24
YFB_stipe_center	Young fruiting body stipe center	0.93	0.00	2.35
YFB_stipe_shell	Young fruiting body stipe shell	0.19	0.00	0.51
YFB_stipe_skin	Young fruiting body stipe skin	0.00	0.00	0.00
YFB_cap_skin	Young fruiting body cap skin	0.22	0.00	0.55
YFB_cap_tissue	Young fruiting body cap tissue	0.76	0.00	2.04
YFB_gill_tissue	Young fruiting body gill tissue	0.38	0.00	0.83
YFB_veil	Young fruiting body veil	2.10	0.64	3.55

Differential expression

Label1	Label2	Q-value	Significant difference
Casing	DIF_gill_tissue	0.512058	no
Casing	YFB_stipe_center	0.549195	no
Casing	YFB_stipe_shell	1.000000	no
Casing	YFB_stipe_skin	1.000000	no
Casing	YFB_cap_skin	1.000000	no
Casing	YFB_cap_tissue	0.573147	no
Casing	YFB_gill_tissue	1.000000	no
Casing	YFB_veil	0.514373	no
Casing	Initials	0.515361	no
Casing	Pileal_Stipeal_center	1.000000	no
Casing	Pileal_Stipeal_shell	0.512058	no
Casing	DIF_stipe_center	0.512058	no
Casing	DIF_stipe_shell	1.000000	no
Casing	DIF_stipe_skin	1.000000	no
Casing	DIF_cap_skin	0.512058	no
Casing	DIF_cap_tissue	0.512058	no
DIF_gill_tissue	YFB_stipe_center	0.076984	no
DIF_gill_tissue	YFB_stipe_shell	0.498538	no
DIF_gill_tissue	YFB_stipe_skin	0.000613	yes
DIF_gill_tissue	YFB_cap_skin	0.495126	no
DIF_gill_tissue	YFB_cap_tissue	0.095644	no
DIF_gill_tissue	YFB_gill_tissue	0.356796	no
DIF_gill_tissue	YFB_veil	0.099929	no
YFB_stipe_center	YFB_stipe_shell	0.568482	no
YFB_stipe_center	YFB_stipe_skin	0.033674	yes
YFB_stipe_center	YFB_cap_skin	0.576772	no
YFB_stipe_center	YFB_cap_tissue	0.932146	no
YFB_stipe_center	YFB_gill_tissue	0.680086	no
YFB_stipe_center	YFB_veil	0.578509	no
YFB_stipe_shell	YFB_stipe_skin	1.000000	no
YFB_stipe_shell	YFB_cap_skin	1.000000	no
YFB_stipe_shell	YFB_cap_tissue	0.624137	no
YFB_stipe_shell	YFB_gill_tissue	1.000000	no
YFB_stipe_shell	YFB_veil	0.499434	no
YFB_stipe_skin	YFB_cap_skin	1.000000	no
YFB_stipe_skin	YFB_cap_tissue	0.056760	no
YFB_stipe_skin	YFB_gill_tissue	1.000000	no
YFB_stipe_skin	YFB_veil	0.004548	yes
YFB_cap_skin	YFB_cap_tissue	0.635876	no
YFB_cap_skin	YFB_gill_tissue	1.000000	no
YFB_cap_skin	YFB_veil	0.498118	no
YFB_cap_tissue	YFB_gill_tissue	0.814221	no
YFB_cap_tissue	YFB_veil	0.478458	no
YFB_gill_tissue	YFB_veil	0.394266	no
Initials	DIF_gill_tissue	0.062229	no
Initials	YFB_stipe_center	0.697866	no
Initials	YFB_stipe_shell	0.505666	no
Initials	YFB_stipe_skin	0.004160	yes
Initials	YFB_cap_skin	0.504690	no
Initials	YFB_cap_tissue	0.595881	no
Initials	YFB_gill_tissue	0.434632	no
Initials	YFB_veil	0.906680	no
Initials	Pileal_Stipeal_center	0.508950	no
Initials	Pileal_Stipeal_shell	0.315419	no
Initials	DIF_stipe_center	0.521513	no
Initials	DIF_stipe_shell	0.522406	no
Initials	DIF_stipe_skin	0.429955	no
Initials	DIF_cap_skin	0.269471	no
Initials	DIF_cap_tissue	0.041164	yes
Pileal_Stipeal_center	DIF_gill_tissue	0.506327	no
Pileal_Stipeal_center	YFB_stipe_center	0.557601	no
Pileal_Stipeal_center	YFB_stipe_shell	1.000000	no
Pileal_Stipeal_center	YFB_stipe_skin	1.000000	no
Pileal_Stipeal_center	YFB_cap_skin	1.000000	no
Pileal_Stipeal_center	YFB_cap_tissue	0.593755	no
Pileal_Stipeal_center	YFB_gill_tissue	1.000000	no
Pileal_Stipeal_center	YFB_veil	0.509581	no
Pileal_Stipeal_center	Pileal_Stipeal_shell	0.506327	no
Pileal_Stipeal_center	DIF_stipe_center	0.506327	no
Pileal_Stipeal_center	DIF_stipe_shell	1.000000	no
Pileal_Stipeal_center	DIF_stipe_skin	1.000000	no
Pileal_Stipeal_center	DIF_cap_skin	0.506327	no
Pileal_Stipeal_center	DIF_cap_tissue	0.506327	no
Pileal_Stipeal_shell	DIF_gill_tissue	0.213655	no
Pileal_Stipeal_shell	YFB_stipe_center	0.182683	no
Pileal_Stipeal_shell	YFB_stipe_shell	0.498538	no
Pileal_Stipeal_shell	YFB_stipe_skin	0.000613	yes
Pileal_Stipeal_shell	YFB_cap_skin	0.495126	no
Pileal_Stipeal_shell	YFB_cap_tissue	0.176439	no
Pileal_Stipeal_shell	YFB_gill_tissue	0.356879	no
Pileal_Stipeal_shell	YFB_veil	0.488978	no
Pileal_Stipeal_shell	DIF_stipe_center	0.794583	no
Pileal_Stipeal_shell	DIF_stipe_shell	0.518261	no
Pileal_Stipeal_shell	DIF_stipe_skin	0.361373	no
Pileal_Stipeal_shell	DIF_cap_skin	0.959217	no
Pileal_Stipeal_shell	DIF_cap_tissue	0.109622	no
DIF_stipe_center	DIF_gill_tissue	0.072330	no
DIF_stipe_center	YFB_stipe_center	0.255586	no
DIF_stipe_center	YFB_stipe_shell	0.498538	no
DIF_stipe_center	YFB_stipe_skin	0.000613	yes
DIF_stipe_center	YFB_cap_skin	0.495126	no
DIF_stipe_center	YFB_cap_tissue	0.230769	no
DIF_stipe_center	YFB_gill_tissue	0.358658	no
DIF_stipe_center	YFB_veil	0.705198	no
DIF_stipe_center	DIF_stipe_shell	0.518261	no
DIF_stipe_center	DIF_stipe_skin	0.361624	no
DIF_stipe_center	DIF_cap_skin	0.714199	no
DIF_stipe_center	DIF_cap_tissue	0.035309	yes
DIF_stipe_shell	DIF_gill_tissue	0.520190	no
DIF_stipe_shell	YFB_stipe_center	0.565575	no
DIF_stipe_shell	YFB_stipe_shell	1.000000	no
DIF_stipe_shell	YFB_stipe_skin	1.000000	no
DIF_stipe_shell	YFB_cap_skin	1.000000	no
DIF_stipe_shell	YFB_cap_tissue	0.598176	no
DIF_stipe_shell	YFB_gill_tissue	1.000000	no
DIF_stipe_shell	YFB_veil	0.523192	no
DIF_stipe_shell	DIF_stipe_skin	1.000000	no
DIF_stipe_shell	DIF_cap_skin	0.520190	no
DIF_stipe_shell	DIF_cap_tissue	0.520190	no
DIF_stipe_skin	DIF_gill_tissue	0.352257	no
DIF_stipe_skin	YFB_stipe_center	0.636999	no
DIF_stipe_skin	YFB_stipe_shell	1.000000	no
DIF_stipe_skin	YFB_stipe_skin	1.000000	no
DIF_stipe_skin	YFB_cap_skin	1.000000	no
DIF_stipe_skin	YFB_cap_tissue	0.713166	no
DIF_stipe_skin	YFB_gill_tissue	1.000000	no
DIF_stipe_skin	YFB_veil	0.380153	no
DIF_stipe_skin	DIF_cap_skin	0.352257	no
DIF_stipe_skin	DIF_cap_tissue	0.352257	no
DIF_cap_skin	DIF_gill_tissue	0.233086	no
DIF_cap_skin	YFB_stipe_center	0.153146	no
DIF_cap_skin	YFB_stipe_shell	0.498538	no
DIF_cap_skin	YFB_stipe_skin	0.000613	yes
DIF_cap_skin	YFB_cap_skin	0.495126	no
DIF_cap_skin	YFB_cap_tissue	0.149346	no
DIF_cap_skin	YFB_gill_tissue	0.356879	no
DIF_cap_skin	YFB_veil	0.421783	no
DIF_cap_skin	DIF_cap_tissue	0.111482	no
DIF_cap_tissue	DIF_gill_tissue	0.819146	no
DIF_cap_tissue	YFB_stipe_center	0.070317	no
DIF_cap_tissue	YFB_stipe_shell	0.498538	no
DIF_cap_tissue	YFB_stipe_skin	0.000613	yes
DIF_cap_tissue	YFB_cap_skin	0.495126	no
DIF_cap_tissue	YFB_cap_tissue	0.094821	no
DIF_cap_tissue	YFB_gill_tissue	0.356796	no
DIF_cap_tissue	YFB_veil	0.067896	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|000570 MKTSVLAIIISFFSFATIFVQALPTPQLLGGGGTGDLVDGVVSTAGGIAGGVAGTVGGVAGGVAPGVLGGGDQPA PKPAPAPEPAPEPEPSPAPSPAPEPAEPAPVDPSA*
Coding	>AgabiH97|000570 ATGAAGACATCCGTCCTCGCCATTATCATCTCTTTCTTTTCCTTCGCTACCATCTTTGTGCAGGCGTTACCCACT CCCCAACTTCTGGGCGGAGGTGGAACTGGTGACCTTGTCGATGGTGTTGTCAGTACTGCTGGTGGTATTGCAGGC GGTGTCGCTGGTACTGTTGGCGGTGTCGCTGGTGGTGTCGCTCCCGGCGTCCTCGGTGGTGGTGATCAACCTGCT CCCAAGCCCGCTCCTGCCCCAGAGCCCGCACCTGAGCCTGAGCCTTCTCCCGCGCCTTCTCCCGCTCCAGAGCCT GCTGAGCCTGCTCCTGTAGACCCTAGCGCATGA
Transcript	>AgabiH97|000570 ATGAAGACATCCGTCCTCGCCATTATCATCTCTTTCTTTTCCTTCGCTACCATCTTTGTGCAGGCGTTACCCACT CCCCAACTTCTGGGCGGAGGTGGAACTGGTGACCTTGTCGATGGTGTTGTCAGTACTGCTGGTGGTATTGCAGGC GGTGTCGCTGGTACTGTTGGCGGTGTCGCTGGTGGTGTCGCTCCCGGCGTCCTCGGTGGTGGTGATCAACCTGCT CCCAAGCCCGCTCCTGCCCCAGAGCCCGCACCTGAGCCTGAGCCTTCTCCCGCGCCTTCTCCCGCTCCAGAGCCT GCTGAGCCTGCTCCTGTAGACCCTAGCGCATGA
Gene	>AgabiH97|000570 ATGAAGACATCCGTCCTCGCCATTATCATCTCTTTCTTTTCCTTCGCTACCATCTTTGTGCAGGCGTTACCCACT CCCCAACTTCTGGGCGGAGGTGGAACTGGTGACCTTGTCGATGGTGTTGTCAGTACTGCTGGTGGTATTGCAGGC GGTGTCGCTGGTACTGTTGGCGGTGTCGCTGGTGGTGTCGGTAAGATATACTAGTTTCAAATTCTAATGCAGTTG CTGATGGTGATGTAGCTCCCGGCGTCCTCGGTGGTGGTGATCAACCTGCTCCCAAGCCCGCTCCTGCCCCAGAGC CCGCACCTGAGCCTGAGCCTTCTCCCGCGCCTTCTCCCGCTCCAGAGCCTGCTGAGCCTGCTCCTGTAGACCCTA GCGCATGA