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| PFAM domain | PF14223 |
| Short name | Retrotran_gag_2 |
| Long name | gag-polypeptide of LTR copia-type |
| Proteins with at least one of this domain | 40 |
| Total domain count | 40 |
| More information | PFAM website |
| Short name | Long name | E-value | Start | End | Name | ||
|---|---|---|---|---|---|---|---|
| protein ID | PFAM | ||||||
| AgabiH97|013110 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 7.9E-07 | 61 | 135 | |
| AgabiH97|013320 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 2.3E-13 | 96 | 204 | |
| PF00665 | rve | Integrase core domain | 1.4E-16 | 532 | 628 | ||
| AgabiH97|016290 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 2.7E-13 | 96 | 209 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 7.3E-07 | 475 | 519 | ||
| PF00665 | rve | Integrase core domain | 9.0E-14 | 534 | 630 | ||
| AgabiH97|016480 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 5.0E-13 | 96 | 209 | |
| PF00665 | rve | Integrase core domain | 1.6E-13 | 534 | 630 | ||
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | 9.0E-67 | 910 | 1155 | ||
| AgabiH97|016530 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 6.3E-08 | 91 | 207 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 2.3E-12 | 468 | 541 | ||
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1.1E-36 | 933 | 1106 | ||
| AgabiH97|018120 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 3.3E-13 | 44 | 186 | |
| AgabiH97|020990 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 9.4E-08 | 60 | 149 | |
| AgabiH97|025340 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 2.2E-12 | 62 | 201 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 1.7E-10 | 431 | 498 | ||
| AgabiH97|025990 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 1.1E-11 | 95 | 222 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 9.7E-12 | 517 | 587 | ||
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1.8E-48 | 977 | 1217 | ||
| AgabiH97|027490 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 8.8E-09 | 89 | 214 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 2.7E-10 | 468 | 541 | ||
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | 4.6E-50 | 971 | 1210 | ||
| AgabiH97|027890 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 1.0E-07 | 78 | 189 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 2.9E-08 | 1026 | 1076 | ||
| PF00665 | rve | Integrase core domain | 8.8E-13 | 1090 | 1187 | ||
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | 2.1E-65 | 1610 | 1841 | ||
| AgabiH97|028980 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 2.5E-16 | 98 | 208 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 6.4E-08 | 456 | 524 | ||
| PF00665 | rve | Integrase core domain | 4.7E-14 | 542 | 635 | ||
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | 4.8E-15 | 914 | 966 | ||
| AgabiH97|030810 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 2.1E-13 | 93 | 219 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 9.5E-12 | 459 | 529 | ||
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | 4.1E-45 | 917 | 1155 | ||
| AgabiH97|030830 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 1.2E-11 | 62 | 204 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 3.6E-10 | 431 | 498 | ||
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | 6.2E-64 | 936 | 1179 | ||
| AgabiH97|031120 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 8.7E-08 | 61 | 135 | |
| AgabiH97|032400 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 4.6E-09 | 102 | 223 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 7.7E-13 | 512 | 585 | ||
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | 5.7E-49 | 984 | 1225 | ||
| AgabiH97|035360 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 6.4E-13 | 89 | 206 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 9.7E-12 | 514 | 586 | ||
| PF00665 | rve | Integrase core domain | 2.1E-08 | 600 | 700 | ||
| AgabiH97|036400 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 1.4E-09 | 90 | 214 | |
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1.0E-48 | 962 | 1203 | ||
| AgabiH97|036790 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 8.5E-10 | 75 | 188 | |
| AgabiH97|036980 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 8.8E-12 | 77 | 193 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 1.1E-11 | 460 | 534 | ||
| PF00665 | rve | Integrase core domain | 1.1E-09 | 549 | 648 | ||
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | 8.2E-52 | 934 | 1173 | ||
| AgabiH97|039170 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 5.8E-11 | 91 | 217 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 1.6E-13 | 497 | 567 | ||
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | 7.4E-46 | 958 | 1191 | ||
| AgabiH97|039240 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 2.1E-08 | 113 | 223 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 8.4E-07 | 741 | 785 | ||
| PF00665 | rve | Integrase core domain | 1.9E-10 | 801 | 896 | ||
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | 2.4E-67 | 1320 | 1555 | ||
| AgabiH97|039900 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 3.3E-07 | 81 | 188 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 2.8E-08 | 1027 | 1077 | ||
| PF00665 | rve | Integrase core domain | 3.3E-13 | 1091 | 1188 | ||
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | 9.8E-65 | 1611 | 1842 | ||
| AgabiH97|040830 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 5.0E-13 | 96 | 209 | |
| PF00665 | rve | Integrase core domain | 1.6E-13 | 534 | 630 | ||
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | 9.0E-67 | 910 | 1155 | ||
| AgabiH97|044710 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 2.9E-10 | 88 | 208 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 6.0E-14 | 513 | 583 | ||
| AgabiH97|050950 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 3.2E-16 | 98 | 208 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 4.7E-08 | 435 | 503 | ||
| PF00665 | rve | Integrase core domain | 3.3E-14 | 521 | 614 | ||
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | 5.3E-68 | 893 | 1137 | ||
| AgabiH97|051280 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 1.8E-08 | 98 | 167 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 9.4E-08 | 427 | 495 | ||
| PF00665 | rve | Integrase core domain | 1.7E-14 | 512 | 606 | ||
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1.4E-66 | 883 | 1128 | ||
| AgabiH97|051290 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 6.3E-16 | 98 | 208 | |
| AgabiH97|060580 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 3.1E-06 | 16 | 116 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 3.1E-07 | 640 | 684 | ||
| PF00665 | rve | Integrase core domain | 2.2E-10 | 700 | 795 | ||
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | 3.2E-65 | 1219 | 1454 | ||
| AgabiH97|076160 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 4.3E-08 | 2 | 113 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 7.9E-09 | 672 | 715 | ||
| PF00665 | rve | Integrase core domain | 6.1E-11 | 731 | 824 | ||
| AgabiH97|079510 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 8.6E-11 | 72 | 199 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 9.2E-08 | 583 | 632 | ||
| PF00665 | rve | Integrase core domain | 1.7E-13 | 645 | 743 | ||
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | 2.8E-69 | 1142 | 1378 | ||
| AgabiH97|079920 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 3.7E-10 | 94 | 219 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 3.1E-14 | 510 | 580 | ||
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | 2.5E-50 | 956 | 1196 | ||
| AgabiH97|081980 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 2.6E-11 | 27 | 158 | |
| AgabiH97|082100 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 7.2E-10 | 14 | 129 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 5.5E-09 | 359 | 425 | ||
| AgabiH97|082170 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 5.4E-12 | 62 | 205 | |
| AgabiH97|089860 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 2.3E-16 | 98 | 208 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 8.9E-08 | 456 | 524 | ||
| PF00665 | rve | Integrase core domain | 5.3E-14 | 541 | 635 | ||
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | 3.3E-68 | 914 | 1158 | ||
| AgabiH97|094220 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 1.8E-11 | 96 | 235 | |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 2.0E-10 | 450 | 517 | ||
| AgabiH97|096660 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 2.9E-15 | 112 | 245 | |
| PF00098 | zf-CCHC | Zinc knuckle | 2.7E-04 | 295 | 311 | ||
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 8.3E-13 | 475 | 534 | ||
| PF00665 | rve | Integrase core domain | 5.3E-12 | 550 | 648 | ||
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1.3E-63 | 926 | 1163 | ||
| AgabiH97|104980 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 9.2E-10 | 90 | 214 | |
| AgabiH97|107310 | PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 9.4E-10 | 16 | 126 |