Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF14223
Short nameRetrotran_gag_2
Long namegag-polypeptide of LTR copia-type
Proteins with at least one of this domain40
Total domain count40
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
AgabiH97|013110 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 7.9E-07 61 135
AgabiH97|013320 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.3E-13 96 204
PF00665 rve Integrase core domain 1.4E-16 532 628
AgabiH97|016290 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.7E-13 96 209
PF13976 gag_pre-integrs GAG-pre-integrase domain 7.3E-07 475 519
PF00665 rve Integrase core domain 9.0E-14 534 630
AgabiH97|016480 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 5.0E-13 96 209
PF00665 rve Integrase core domain 1.6E-13 534 630
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 9.0E-67 910 1155
AgabiH97|016530 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 6.3E-08 91 207
PF13976 gag_pre-integrs GAG-pre-integrase domain 2.3E-12 468 541
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.1E-36 933 1106
AgabiH97|018120 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 3.3E-13 44 186
AgabiH97|020990 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 9.4E-08 60 149
AgabiH97|025340 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.2E-12 62 201
PF13976 gag_pre-integrs GAG-pre-integrase domain 1.7E-10 431 498
AgabiH97|025990 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.1E-11 95 222
PF13976 gag_pre-integrs GAG-pre-integrase domain 9.7E-12 517 587
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.8E-48 977 1217
AgabiH97|027490 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 8.8E-09 89 214
PF13976 gag_pre-integrs GAG-pre-integrase domain 2.7E-10 468 541
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 4.6E-50 971 1210
AgabiH97|027890 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.0E-07 78 189
PF13976 gag_pre-integrs GAG-pre-integrase domain 2.9E-08 1026 1076
PF00665 rve Integrase core domain 8.8E-13 1090 1187
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.1E-65 1610 1841
AgabiH97|028980 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.5E-16 98 208
PF13976 gag_pre-integrs GAG-pre-integrase domain 6.4E-08 456 524
PF00665 rve Integrase core domain 4.7E-14 542 635
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 4.8E-15 914 966
AgabiH97|030810 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.1E-13 93 219
PF13976 gag_pre-integrs GAG-pre-integrase domain 9.5E-12 459 529
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 4.1E-45 917 1155
AgabiH97|030830 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.2E-11 62 204
PF13976 gag_pre-integrs GAG-pre-integrase domain 3.6E-10 431 498
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 6.2E-64 936 1179
AgabiH97|031120 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 8.7E-08 61 135
AgabiH97|032400 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 4.6E-09 102 223
PF13976 gag_pre-integrs GAG-pre-integrase domain 7.7E-13 512 585
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 5.7E-49 984 1225
AgabiH97|035360 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 6.4E-13 89 206
PF13976 gag_pre-integrs GAG-pre-integrase domain 9.7E-12 514 586
PF00665 rve Integrase core domain 2.1E-08 600 700
AgabiH97|036400 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.4E-09 90 214
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.0E-48 962 1203
AgabiH97|036790 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 8.5E-10 75 188
AgabiH97|036980 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 8.8E-12 77 193
PF13976 gag_pre-integrs GAG-pre-integrase domain 1.1E-11 460 534
PF00665 rve Integrase core domain 1.1E-09 549 648
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 8.2E-52 934 1173
AgabiH97|039170 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 5.8E-11 91 217
PF13976 gag_pre-integrs GAG-pre-integrase domain 1.6E-13 497 567
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 7.4E-46 958 1191
AgabiH97|039240 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.1E-08 113 223
PF13976 gag_pre-integrs GAG-pre-integrase domain 8.4E-07 741 785
PF00665 rve Integrase core domain 1.9E-10 801 896
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.4E-67 1320 1555
AgabiH97|039900 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 3.3E-07 81 188
PF13976 gag_pre-integrs GAG-pre-integrase domain 2.8E-08 1027 1077
PF00665 rve Integrase core domain 3.3E-13 1091 1188
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 9.8E-65 1611 1842
AgabiH97|040830 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 5.0E-13 96 209
PF00665 rve Integrase core domain 1.6E-13 534 630
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 9.0E-67 910 1155
AgabiH97|044710 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.9E-10 88 208
PF13976 gag_pre-integrs GAG-pre-integrase domain 6.0E-14 513 583
AgabiH97|050950 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 3.2E-16 98 208
PF13976 gag_pre-integrs GAG-pre-integrase domain 4.7E-08 435 503
PF00665 rve Integrase core domain 3.3E-14 521 614
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 5.3E-68 893 1137
AgabiH97|051280 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.8E-08 98 167
PF13976 gag_pre-integrs GAG-pre-integrase domain 9.4E-08 427 495
PF00665 rve Integrase core domain 1.7E-14 512 606
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.4E-66 883 1128
AgabiH97|051290 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 6.3E-16 98 208
AgabiH97|060580 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 3.1E-06 16 116
PF13976 gag_pre-integrs GAG-pre-integrase domain 3.1E-07 640 684
PF00665 rve Integrase core domain 2.2E-10 700 795
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 3.2E-65 1219 1454
AgabiH97|076160 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 4.3E-08 2 113
PF13976 gag_pre-integrs GAG-pre-integrase domain 7.9E-09 672 715
PF00665 rve Integrase core domain 6.1E-11 731 824
AgabiH97|079510 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 8.6E-11 72 199
PF13976 gag_pre-integrs GAG-pre-integrase domain 9.2E-08 583 632
PF00665 rve Integrase core domain 1.7E-13 645 743
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.8E-69 1142 1378
AgabiH97|079920 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 3.7E-10 94 219
PF13976 gag_pre-integrs GAG-pre-integrase domain 3.1E-14 510 580
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.5E-50 956 1196
AgabiH97|081980 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.6E-11 27 158
AgabiH97|082100 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 7.2E-10 14 129
PF13976 gag_pre-integrs GAG-pre-integrase domain 5.5E-09 359 425
AgabiH97|082170 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 5.4E-12 62 205
AgabiH97|089860 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.3E-16 98 208
PF13976 gag_pre-integrs GAG-pre-integrase domain 8.9E-08 456 524
PF00665 rve Integrase core domain 5.3E-14 541 635
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 3.3E-68 914 1158
AgabiH97|094220 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.8E-11 96 235
PF13976 gag_pre-integrs GAG-pre-integrase domain 2.0E-10 450 517
AgabiH97|096660 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.9E-15 112 245
PF00098 zf-CCHC Zinc knuckle 2.7E-04 295 311
PF13976 gag_pre-integrs GAG-pre-integrase domain 8.3E-13 475 534
PF00665 rve Integrase core domain 5.3E-12 550 648
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.3E-63 926 1163
AgabiH97|104980 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 9.2E-10 90 214
AgabiH97|107310 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 9.4E-10 16 126

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